mRNA_L-digitata_M_contig102553.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A059EBS1_9PROT (Acyl-CoA dehydrogenase n=10 Tax=root TaxID=1 RepID=A0A059EBS1_9PROT) HSP 1 Score: 468 bits (1204), Expect = 5.710e-164 Identity = 241/267 (90.26%), Postives = 257/267 (96.25%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
MTFLLTEDQEMLRDTAMAFARDE+PVTRLR+LRDSGANGVD +TRQKLAELGFFGVIIPDEPGGEHFGLVGLGQ+LEAQGRTLA TPVLQTALIAASALQLGGSAEQQAEWLPKIAGG +FALALDETAHFNPLGVA EAE NGQGYTLNGMKRFV DAHHA+MLIVVART+GEAGDRHGLTLF+VPADAKGVS+QALNSVDSHGAAH+ LEDV+VP +A+IGAVDKGADVLEPVLDRAA+GQAAEMLGSA AAF+MTLEYLN+RK
Sbjct: 1 MTFLLTEDQEMLRDTAMAFARDELPVTRLRKLRDSGANGVDPDTRQKLAELGFFGVIIPDEPGGEHFGLVGLGQILEAQGRTLAATPVLQTALIAASALQLGGSAEQQAEWLPKIAGGDATFALALDETAHFNPLGVATEAERNGQGYTLNGMKRFVADAHHADMLIVVARTYGEAGDRHGLTLFLVPADAKGVSVQALNSVDSHGAAHITLEDVIVPDSAIIGAVDKGADVLEPVLDRAAMGQAAEMLGSAQAAFDMTLEYLNSRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A062U2U9_9PROT (Acyl-CoA dehydrogenase n=3 Tax=Hyphomonas TaxID=85 RepID=A0A062U2U9_9PROT) HSP 1 Score: 457 bits (1176), Expect = 1.040e-159 Identity = 235/267 (88.01%), Postives = 252/267 (94.38%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
MTFLLTEDQEMLR+TAM FARDE+P+T LR+LR+SGANGVD ETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQ+LEAQGRTLA TPV+QTALIAASALQLGGS QQAEWLPKIAGG T+FALA+DE+AHFNPLGVA EAE NGQGYTLNGMKR+VPDAHHA+MLIVVARTFGEAGDRHGL+LF+VPADAKGVSIQALN+VDSHGAAHV LEDVMVP A+IGA D+GADVLEPVLDRAAIGQAAEMLGSA AAFEMTLEYL NRK
Sbjct: 1 MTFLLTEDQEMLRETAMTFARDELPITHLRKLRNSGANGVDPETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQILEAQGRTLAATPVMQTALIAASALQLGGSPAQQAEWLPKIAGGETTFALAMDESAHFNPLGVATEAERNGQGYTLNGMKRYVPDAHHADMLIVVARTFGEAGDRHGLSLFLVPADAKGVSIQALNTVDSHGAAHVTLEDVMVPEDALIGAADQGADVLEPVLDRAAIGQAAEMLGSAQAAFEMTLEYLQNRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A069E567_9PROT (Acyl-CoA dehydrogenase family protein n=8 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A069E567_9PROT) HSP 1 Score: 427 bits (1099), Expect = 5.330e-148 Identity = 221/267 (82.77%), Postives = 240/267 (89.89%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
MTFLLTEDQEMLR+TAMAFARDE+PVT LR LRDSGANG D TRQKLAELGFFGVI+P+EPGGEHFGLVGLGQ+LEAQGRTLA TP+LQTALI ASA+QLGG+ QQAEWLPKIAGG +FALALDE+AHFNPL VA EAE NGQGYTLNG KRFVPD HHA+MLIVVARTFGEAGDRHGL+LF+VPADAKGVSIQ L + DSHGAAH+ L DVMV A+IGA D+GADVLEPVLDRAAIGQAAEMLGS+ AAFEMTLEYL +RK
Sbjct: 1 MTFLLTEDQEMLRETAMAFARDELPVTHLRALRDSGANGKDPATRQKLAELGFFGVIVPEEPGGEHFGLVGLGQILEAQGRTLAATPLLQTALIGASAIQLGGTPAQQAEWLPKIAGGDVTFALALDESAHFNPLNVATEAERNGQGYTLNGEKRFVPDGHHADMLIVVARTFGEAGDRHGLSLFLVPADAKGVSIQELKTADSHGAAHITLTDVMVGEGALIGAADEGADVLEPVLDRAAIGQAAEMLGSSQAAFEMTLEYLQSRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A059FQ94_9PROT (Acyl-CoA dehydrogenase family protein n=4 Tax=Hyphomonas TaxID=85 RepID=A0A059FQ94_9PROT) HSP 1 Score: 415 bits (1067), Expect = 3.900e-143 Identity = 215/267 (80.52%), Postives = 234/267 (87.64%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
M+F+LTEDQEMLRDTA+AF RDE+PVT LR LRD GANG DA TRQKLAELGFFGVIIPDEPGGEHFGLVGLGQ+LEAQGRTLA TP+LQTALIAASA+QLGGS QAEWLPKIA G T+FALALDE+AHF PL VA EAESNGQGYTLNGMKRFVP H AEM IVVARTFGE GDRHGLTLF+VPA KGV++Q L +VDSHGAAHV +DVMV V+G VD+GADVLEPVLDRAAIG AAEMLGS++AAFEMTLEYL +RK
Sbjct: 1 MSFVLTEDQEMLRDTALAFVRDELPVTHLRALRDKGANGRDAATRQKLAELGFFGVIIPDEPGGEHFGLVGLGQILEAQGRTLAATPLLQTALIAASAIQLGGSKAMQAEWLPKIAAGETTFALALDESAHFAPLNVATEAESNGQGYTLNGMKRFVPGGHDAEMFIVVARTFGETGDRHGLTLFLVPAKTKGVTVQELKTVDSHGAAHVTFDDVMVGQNGVLGPVDEGADVLEPVLDRAAIGMAAEMLGSSEAAFEMTLEYLQSRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A062VGB0_9PROT (Acyl-CoA dehydrogenase family protein n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A062VGB0_9PROT) HSP 1 Score: 403 bits (1036), Expect = 2.000e-138 Identity = 207/267 (77.53%), Postives = 234/267 (87.64%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
M+F+LTEDQEMLR+TAMAFARDE+ V LR LRD+GANG DA+TRQKLAELGFFGVIIPDEPG E FGL GLGQ+LEAQGRTLA TP+LQTALIAASA QLGGS QQAEWLPKIA G +FALALDE+AHF+P V+ EAE NGQGYT+NGMK++VPDAHHA+MLIVVARTFG GDRHGL+LF+VPADAKGV+I L +VDSHGAAHV +DVMV + +IG D+GAD+L+PVLDRAAIG AAEMLGSA AAF+MTLEYLNNRK
Sbjct: 1 MSFVLTEDQEMLRETAMAFARDELSVNHLRALRDAGANGKDAKTRQKLAELGFFGVIIPDEPGAETFGLTGLGQILEAQGRTLAATPLLQTALIAASAFQLGGSPAQQAEWLPKIAAGEVTFALALDESAHFSPYSVSTEAERNGQGYTINGMKKYVPDAHHADMLIVVARTFGSNGDRHGLSLFLVPADAKGVTISELKTVDSHGAAHVTFDDVMVLESTLIGPADQGADILDPVLDRAAIGLAAEMLGSAQAAFDMTLEYLNNRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: UPI001C7FBBCE (acyl-CoA dehydrogenase family protein n=1 Tax=Hyphomonas sp. WL0036 TaxID=2866160 RepID=UPI001C7FBBCE) HSP 1 Score: 395 bits (1016), Expect = 2.190e-135 Identity = 201/267 (75.28%), Postives = 233/267 (87.27%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
M+F+LTEDQEMLR+TA AFARDE+ + LR +RD+GANG D+ TRQKLAELGFFGVIIPDEPG E FG+ GLGQ+LEAQGRT+A TP+LQTALIAAS LQLGGSA QQA WLPKIA G +FALALDE+AHF+P V+ EAE NGQGYT+NG+K++VPDAHHA+MLIVVARTFGEAGDRHGL+LF+VPADAKGVSI L +VDSHGAAHV + V VP +A+IG D+GAD+L+PVLDRAAIG AAEMLGS+ AAF+MTLEYLN RK
Sbjct: 1 MSFVLTEDQEMLRETATAFARDELSIAHLRAMRDAGANGKDSATRQKLAELGFFGVIIPDEPGAETFGMAGLGQILEAQGRTVAATPLLQTALIAASTLQLGGSAAQQAAWLPKIAAGEKTFALALDESAHFSPYNVSTEAERNGQGYTINGLKKYVPDAHHADMLIVVARTFGEAGDRHGLSLFLVPADAKGVSIAELKTVDSHGAAHVTFDGVNVPESALIGPADEGADILDPVLDRAAIGLAAEMLGSSQAAFDMTLEYLNTRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: UPI000A06FFAD (acyl-CoA dehydrogenase family protein n=1 Tax=Henriciella pelagia TaxID=1977912 RepID=UPI000A06FFAD) HSP 1 Score: 360 bits (925), Expect = 1.430e-121 Identity = 189/267 (70.79%), Postives = 216/267 (80.90%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
M+F+LTEDQEMLRDTA+ F RDE+PV LR LRDSG NGVD E RQKLAELGFFGV+IP+E G G+V LGQV+EAQGRTLA TP+LQTA I ASA+ LGGS Q+ EWLPKIA G + ALALDE +H NP GVA EAE +GQGYTLNG K++V D HHA++ IVVARTFGEAGD+HGLTLF+VP DA GVS+Q LN+VDSHGAAH+ LEDV VP + V+GA DKG D+LEPVLDR I AAEMLGS+ AAFEMT EYL RK
Sbjct: 1 MSFVLTEDQEMLRDTAINFTRDELPVKHLRGLRDSGKNGVDPEGRQKLAELGFFGVLIPEEYDGVGMGMVALGQVMEAQGRTLASTPLLQTACIGASAILLGGSEAQKQEWLPKIASGEVTTALALDEGSHHNPAGVATEAERDGQGYTLNGAKKYVQDGHHADVFIVVARTFGEAGDKHGLTLFLVPRDANGVSVQTLNTVDSHGAAHLTLEDVHVPESHVLGAPDKGMDILEPVLDRGRIALAAEMLGSSRAAFEMTHEYLQTRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: UPI000A058F22 (acyl-CoA dehydrogenase family protein n=1 Tax=Henriciella litoralis TaxID=568102 RepID=UPI000A058F22) HSP 1 Score: 355 bits (911), Expect = 1.900e-119 Identity = 185/267 (69.29%), Postives = 217/267 (81.27%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
MTF+LTEDQEMLRDTA+ F RDE+PV LR LRDSG NGVDAE RQKLAELGFFGV+IP+E G G+V LGQV+EAQGRTLA T +LQTA + ASA+ LGG+ EQ+ EWLPKIA G + ALALDE +H +P GVA EAE +GQGYTLNG K++V D HHA++ IVV RTFGEAGD HGLTLF+VP DAKG+++++LN+VDSHGAAH+ LEDV VP + V+GA DKG D+LEPVLDR I AAEMLGSA AAFE+T EYL RK
Sbjct: 1 MTFVLTEDQEMLRDTAVNFTRDELPVKHLRSLRDSGKNGVDAEGRQKLAELGFFGVLIPEEYDGVGMGMVALGQVMEAQGRTLAATALLQTACMGASAILLGGTEEQKKEWLPKIASGEVTTALALDEGSHHSPAGVATEAERDGQGYTLNGAKKYVSDGHHADVFIVVGRTFGEAGDTHGLTLFLVPRDAKGLTVKSLNTVDSHGAAHLTLEDVHVPESHVLGAPDKGMDLLEPVLDRGRIALAAEMLGSATAAFELTHEYLQTRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: UPI0008DA1EAB (acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Hyphomonas sp. Mor2 TaxID=1906738 RepID=UPI0008DA1EAB) HSP 1 Score: 352 bits (904), Expect = 2.200e-118 Identity = 182/267 (68.16%), Postives = 214/267 (80.15%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
M+F+L+EDQ+MLRDTAMAFARDEMPVT LR+LRD GANGVDAE R KLAELGFFGV++P+E G G+V +GQ++EAQGRT+A TP+LQTA+I AS L LGGS Q+AEWLPKIA G + A+A+DE H PL VA EAE NGQGYTLNG KRFV D HHA++ IV ARTFGEAG HG++LF+VP DA G+S+QALN+VDSHGAAH+ LEDV V V+GAVD G +VLEP LDR I AAE LGSA AAF+MTLEY+ RK
Sbjct: 1 MSFVLSEDQQMLRDTAMAFARDEMPVTHLRELRDGGANGVDAEMRGKLAELGFFGVLVPEEHDGVGLGMVAMGQIMEAQGRTIAATPLLQTAVIGASVLILGGSEAQKAEWLPKIASGEVTVAVAVDEGTHHAPLNVATEAERNGQGYTLNGAKRFVADGHHADIFIVAARTFGEAGQAHGISLFLVPNDADGLSVQALNTVDSHGAAHLTLEDVAVSEDHVVGAVDAGWEVLEPALDRGRIALAAEALGSAQAAFDMTLEYMQTRK 267
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A399RCF2_9PROT (Acyl-CoA dehydrogenase n=6 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A399RCF2_9PROT) HSP 1 Score: 352 bits (903), Expect = 3.110e-118 Identity = 182/267 (68.16%), Postives = 213/267 (79.78%), Query Frame = 1
Query: 1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
MTF+LTEDQEMLRDTA+ F RDE+PV LR LRD+G NGVD E RQKLAELGFFGV+IP+E G + GQV+EAQGRTLA TP+LQTA I ASA+ +GG+ Q+ EWLPKIA G + ALALDET+H NP GVA EAE +GQGYTLNG K++V D HHA+M IVVARTFGEAGD HGLTLF+VP DAKG+++QALN+VDSHGAAH+ L+ V V + V+GA DKG D+LEPVLDR I AAEMLGS+ AAFEMT EY+ RK
Sbjct: 1 MTFILTEDQEMLRDTAVNFTRDELPVKHLRALRDAGKNGVDPEARQKLAELGFFGVLIPEEYDGVEMSMTAFGQVMEAQGRTLASTPLLQTACIGASAILMGGTEAQKKEWLPKIAAGEVTTALALDETSHHNPAGVATEAERDGQGYTLNGAKKYVQDGHHADMFIVVARTFGEAGDSHGLTLFLVPRDAKGLTVQALNTVDSHGAAHLTLDGVHVDDSHVLGAADKGMDILEPVLDRGRIALAAEMLGSSLAAFEMTHEYMQTRK 267 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig102553.1.1 >prot_L-digitata_M_contig102553.1.1 ID=prot_L-digitata_M_contig102553.1.1|Name=mRNA_L-digitata_M_contig102553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=267bp MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAEback to top mRNA from alignment at L-digitata_M_contig102553:3..803- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig102553.1.1 ID=mRNA_L-digitata_M_contig102553.1.1|Name=mRNA_L-digitata_M_contig102553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=801bp|location=Sequence derived from alignment at L-digitata_M_contig102553:3..803- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig102553:3..803- >mRNA_L-digitata_M_contig102553.1.1 ID=mRNA_L-digitata_M_contig102553.1.1|Name=mRNA_L-digitata_M_contig102553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=801bp|location=Sequence derived from alignment at L-digitata_M_contig102553:3..803- (Laminaria digitata LdigPH10_18mv male)back to top |