mRNA_L-digitata_M_contig102553.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102553.1.1
Unique NamemRNA_L-digitata_M_contig102553.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A059EBS1_9PROT (Acyl-CoA dehydrogenase n=10 Tax=root TaxID=1 RepID=A0A059EBS1_9PROT)

HSP 1 Score: 468 bits (1204), Expect = 5.710e-164
Identity = 241/267 (90.26%), Postives = 257/267 (96.25%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            MTFLLTEDQEMLRDTAMAFARDE+PVTRLR+LRDSGANGVD +TRQKLAELGFFGVIIPDEPGGEHFGLVGLGQ+LEAQGRTLA TPVLQTALIAASALQLGGSAEQQAEWLPKIAGG  +FALALDETAHFNPLGVA EAE NGQGYTLNGMKRFV DAHHA+MLIVVART+GEAGDRHGLTLF+VPADAKGVS+QALNSVDSHGAAH+ LEDV+VP +A+IGAVDKGADVLEPVLDRAA+GQAAEMLGSA AAF+MTLEYLN+RK
Sbjct:    1 MTFLLTEDQEMLRDTAMAFARDELPVTRLRKLRDSGANGVDPDTRQKLAELGFFGVIIPDEPGGEHFGLVGLGQILEAQGRTLAATPVLQTALIAASALQLGGSAEQQAEWLPKIAGGDATFALALDETAHFNPLGVATEAERNGQGYTLNGMKRFVADAHHADMLIVVARTYGEAGDRHGLTLFLVPADAKGVSVQALNSVDSHGAAHITLEDVIVPDSAIIGAVDKGADVLEPVLDRAAMGQAAEMLGSAQAAFDMTLEYLNSRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A062U2U9_9PROT (Acyl-CoA dehydrogenase n=3 Tax=Hyphomonas TaxID=85 RepID=A0A062U2U9_9PROT)

HSP 1 Score: 457 bits (1176), Expect = 1.040e-159
Identity = 235/267 (88.01%), Postives = 252/267 (94.38%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            MTFLLTEDQEMLR+TAM FARDE+P+T LR+LR+SGANGVD ETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQ+LEAQGRTLA TPV+QTALIAASALQLGGS  QQAEWLPKIAGG T+FALA+DE+AHFNPLGVA EAE NGQGYTLNGMKR+VPDAHHA+MLIVVARTFGEAGDRHGL+LF+VPADAKGVSIQALN+VDSHGAAHV LEDVMVP  A+IGA D+GADVLEPVLDRAAIGQAAEMLGSA AAFEMTLEYL NRK
Sbjct:    1 MTFLLTEDQEMLRETAMTFARDELPITHLRKLRNSGANGVDPETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQILEAQGRTLAATPVMQTALIAASALQLGGSPAQQAEWLPKIAGGETTFALAMDESAHFNPLGVATEAERNGQGYTLNGMKRYVPDAHHADMLIVVARTFGEAGDRHGLSLFLVPADAKGVSIQALNTVDSHGAAHVTLEDVMVPEDALIGAADQGADVLEPVLDRAAIGQAAEMLGSAQAAFEMTLEYLQNRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A069E567_9PROT (Acyl-CoA dehydrogenase family protein n=8 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A069E567_9PROT)

HSP 1 Score: 427 bits (1099), Expect = 5.330e-148
Identity = 221/267 (82.77%), Postives = 240/267 (89.89%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            MTFLLTEDQEMLR+TAMAFARDE+PVT LR LRDSGANG D  TRQKLAELGFFGVI+P+EPGGEHFGLVGLGQ+LEAQGRTLA TP+LQTALI ASA+QLGG+  QQAEWLPKIAGG  +FALALDE+AHFNPL VA EAE NGQGYTLNG KRFVPD HHA+MLIVVARTFGEAGDRHGL+LF+VPADAKGVSIQ L + DSHGAAH+ L DVMV   A+IGA D+GADVLEPVLDRAAIGQAAEMLGS+ AAFEMTLEYL +RK
Sbjct:    1 MTFLLTEDQEMLRETAMAFARDELPVTHLRALRDSGANGKDPATRQKLAELGFFGVIVPEEPGGEHFGLVGLGQILEAQGRTLAATPLLQTALIGASAIQLGGTPAQQAEWLPKIAGGDVTFALALDESAHFNPLNVATEAERNGQGYTLNGEKRFVPDGHHADMLIVVARTFGEAGDRHGLSLFLVPADAKGVSIQELKTADSHGAAHITLTDVMVGEGALIGAADEGADVLEPVLDRAAIGQAAEMLGSSQAAFEMTLEYLQSRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A059FQ94_9PROT (Acyl-CoA dehydrogenase family protein n=4 Tax=Hyphomonas TaxID=85 RepID=A0A059FQ94_9PROT)

HSP 1 Score: 415 bits (1067), Expect = 3.900e-143
Identity = 215/267 (80.52%), Postives = 234/267 (87.64%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            M+F+LTEDQEMLRDTA+AF RDE+PVT LR LRD GANG DA TRQKLAELGFFGVIIPDEPGGEHFGLVGLGQ+LEAQGRTLA TP+LQTALIAASA+QLGGS   QAEWLPKIA G T+FALALDE+AHF PL VA EAESNGQGYTLNGMKRFVP  H AEM IVVARTFGE GDRHGLTLF+VPA  KGV++Q L +VDSHGAAHV  +DVMV    V+G VD+GADVLEPVLDRAAIG AAEMLGS++AAFEMTLEYL +RK
Sbjct:    1 MSFVLTEDQEMLRDTALAFVRDELPVTHLRALRDKGANGRDAATRQKLAELGFFGVIIPDEPGGEHFGLVGLGQILEAQGRTLAATPLLQTALIAASAIQLGGSKAMQAEWLPKIAAGETTFALALDESAHFAPLNVATEAESNGQGYTLNGMKRFVPGGHDAEMFIVVARTFGETGDRHGLTLFLVPAKTKGVTVQELKTVDSHGAAHVTFDDVMVGQNGVLGPVDEGADVLEPVLDRAAIGMAAEMLGSSEAAFEMTLEYLQSRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A062VGB0_9PROT (Acyl-CoA dehydrogenase family protein n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A062VGB0_9PROT)

HSP 1 Score: 403 bits (1036), Expect = 2.000e-138
Identity = 207/267 (77.53%), Postives = 234/267 (87.64%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            M+F+LTEDQEMLR+TAMAFARDE+ V  LR LRD+GANG DA+TRQKLAELGFFGVIIPDEPG E FGL GLGQ+LEAQGRTLA TP+LQTALIAASA QLGGS  QQAEWLPKIA G  +FALALDE+AHF+P  V+ EAE NGQGYT+NGMK++VPDAHHA+MLIVVARTFG  GDRHGL+LF+VPADAKGV+I  L +VDSHGAAHV  +DVMV  + +IG  D+GAD+L+PVLDRAAIG AAEMLGSA AAF+MTLEYLNNRK
Sbjct:    1 MSFVLTEDQEMLRETAMAFARDELSVNHLRALRDAGANGKDAKTRQKLAELGFFGVIIPDEPGAETFGLTGLGQILEAQGRTLAATPLLQTALIAASAFQLGGSPAQQAEWLPKIAAGEVTFALALDESAHFSPYSVSTEAERNGQGYTINGMKKYVPDAHHADMLIVVARTFGSNGDRHGLSLFLVPADAKGVTISELKTVDSHGAAHVTFDDVMVLESTLIGPADQGADILDPVLDRAAIGLAAEMLGSAQAAFDMTLEYLNNRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: UPI001C7FBBCE (acyl-CoA dehydrogenase family protein n=1 Tax=Hyphomonas sp. WL0036 TaxID=2866160 RepID=UPI001C7FBBCE)

HSP 1 Score: 395 bits (1016), Expect = 2.190e-135
Identity = 201/267 (75.28%), Postives = 233/267 (87.27%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            M+F+LTEDQEMLR+TA AFARDE+ +  LR +RD+GANG D+ TRQKLAELGFFGVIIPDEPG E FG+ GLGQ+LEAQGRT+A TP+LQTALIAAS LQLGGSA QQA WLPKIA G  +FALALDE+AHF+P  V+ EAE NGQGYT+NG+K++VPDAHHA+MLIVVARTFGEAGDRHGL+LF+VPADAKGVSI  L +VDSHGAAHV  + V VP +A+IG  D+GAD+L+PVLDRAAIG AAEMLGS+ AAF+MTLEYLN RK
Sbjct:    1 MSFVLTEDQEMLRETATAFARDELSIAHLRAMRDAGANGKDSATRQKLAELGFFGVIIPDEPGAETFGMAGLGQILEAQGRTVAATPLLQTALIAASTLQLGGSAAQQAAWLPKIAAGEKTFALALDESAHFSPYNVSTEAERNGQGYTINGLKKYVPDAHHADMLIVVARTFGEAGDRHGLSLFLVPADAKGVSIAELKTVDSHGAAHVTFDGVNVPESALIGPADEGADILDPVLDRAAIGLAAEMLGSSQAAFDMTLEYLNTRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: UPI000A06FFAD (acyl-CoA dehydrogenase family protein n=1 Tax=Henriciella pelagia TaxID=1977912 RepID=UPI000A06FFAD)

HSP 1 Score: 360 bits (925), Expect = 1.430e-121
Identity = 189/267 (70.79%), Postives = 216/267 (80.90%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            M+F+LTEDQEMLRDTA+ F RDE+PV  LR LRDSG NGVD E RQKLAELGFFGV+IP+E  G   G+V LGQV+EAQGRTLA TP+LQTA I ASA+ LGGS  Q+ EWLPKIA G  + ALALDE +H NP GVA EAE +GQGYTLNG K++V D HHA++ IVVARTFGEAGD+HGLTLF+VP DA GVS+Q LN+VDSHGAAH+ LEDV VP + V+GA DKG D+LEPVLDR  I  AAEMLGS+ AAFEMT EYL  RK
Sbjct:    1 MSFVLTEDQEMLRDTAINFTRDELPVKHLRGLRDSGKNGVDPEGRQKLAELGFFGVLIPEEYDGVGMGMVALGQVMEAQGRTLASTPLLQTACIGASAILLGGSEAQKQEWLPKIASGEVTTALALDEGSHHNPAGVATEAERDGQGYTLNGAKKYVQDGHHADVFIVVARTFGEAGDKHGLTLFLVPRDANGVSVQTLNTVDSHGAAHLTLEDVHVPESHVLGAPDKGMDILEPVLDRGRIALAAEMLGSSRAAFEMTHEYLQTRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: UPI000A058F22 (acyl-CoA dehydrogenase family protein n=1 Tax=Henriciella litoralis TaxID=568102 RepID=UPI000A058F22)

HSP 1 Score: 355 bits (911), Expect = 1.900e-119
Identity = 185/267 (69.29%), Postives = 217/267 (81.27%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            MTF+LTEDQEMLRDTA+ F RDE+PV  LR LRDSG NGVDAE RQKLAELGFFGV+IP+E  G   G+V LGQV+EAQGRTLA T +LQTA + ASA+ LGG+ EQ+ EWLPKIA G  + ALALDE +H +P GVA EAE +GQGYTLNG K++V D HHA++ IVV RTFGEAGD HGLTLF+VP DAKG+++++LN+VDSHGAAH+ LEDV VP + V+GA DKG D+LEPVLDR  I  AAEMLGSA AAFE+T EYL  RK
Sbjct:    1 MTFVLTEDQEMLRDTAVNFTRDELPVKHLRSLRDSGKNGVDAEGRQKLAELGFFGVLIPEEYDGVGMGMVALGQVMEAQGRTLAATALLQTACMGASAILLGGTEEQKKEWLPKIASGEVTTALALDEGSHHSPAGVATEAERDGQGYTLNGAKKYVSDGHHADVFIVVGRTFGEAGDTHGLTLFLVPRDAKGLTVKSLNTVDSHGAAHLTLEDVHVPESHVLGAPDKGMDLLEPVLDRGRIALAAEMLGSATAAFELTHEYLQTRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: UPI0008DA1EAB (acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Hyphomonas sp. Mor2 TaxID=1906738 RepID=UPI0008DA1EAB)

HSP 1 Score: 352 bits (904), Expect = 2.200e-118
Identity = 182/267 (68.16%), Postives = 214/267 (80.15%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            M+F+L+EDQ+MLRDTAMAFARDEMPVT LR+LRD GANGVDAE R KLAELGFFGV++P+E  G   G+V +GQ++EAQGRT+A TP+LQTA+I AS L LGGS  Q+AEWLPKIA G  + A+A+DE  H  PL VA EAE NGQGYTLNG KRFV D HHA++ IV ARTFGEAG  HG++LF+VP DA G+S+QALN+VDSHGAAH+ LEDV V    V+GAVD G +VLEP LDR  I  AAE LGSA AAF+MTLEY+  RK
Sbjct:    1 MSFVLSEDQQMLRDTAMAFARDEMPVTHLRELRDGGANGVDAEMRGKLAELGFFGVLVPEEHDGVGLGMVAMGQIMEAQGRTIAATPLLQTAVIGASVLILGGSEAQKAEWLPKIASGEVTVAVAVDEGTHHAPLNVATEAERNGQGYTLNGAKRFVADGHHADIFIVAARTFGEAGQAHGISLFLVPNDADGLSVQALNTVDSHGAAHLTLEDVAVSEDHVVGAVDAGWEVLEPALDRGRIALAAEALGSAQAAFDMTLEYMQTRK 267          
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Match: A0A399RCF2_9PROT (Acyl-CoA dehydrogenase n=6 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A399RCF2_9PROT)

HSP 1 Score: 352 bits (903), Expect = 3.110e-118
Identity = 182/267 (68.16%), Postives = 213/267 (79.78%), Query Frame = 1
Query:    1 MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAELGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQLGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTLNGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALNSVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLGSADAAFEMTLEYLNNRK 801
            MTF+LTEDQEMLRDTA+ F RDE+PV  LR LRD+G NGVD E RQKLAELGFFGV+IP+E  G    +   GQV+EAQGRTLA TP+LQTA I ASA+ +GG+  Q+ EWLPKIA G  + ALALDET+H NP GVA EAE +GQGYTLNG K++V D HHA+M IVVARTFGEAGD HGLTLF+VP DAKG+++QALN+VDSHGAAH+ L+ V V  + V+GA DKG D+LEPVLDR  I  AAEMLGS+ AAFEMT EY+  RK
Sbjct:    1 MTFILTEDQEMLRDTAVNFTRDELPVKHLRALRDAGKNGVDPEARQKLAELGFFGVLIPEEYDGVEMSMTAFGQVMEAQGRTLASTPLLQTACIGASAILMGGTEAQKKEWLPKIAAGEVTTALALDETSHHNPAGVATEAERDGQGYTLNGAKKYVQDGHHADMFIVVARTFGEAGDSHGLTLFLVPRDAKGLTVQALNTVDSHGAAHLTLDGVHVDDSHVLGAADKGMDILEPVLDRGRIALAAEMLGSSLAAFEMTHEYMQTRK 267          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102553.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059EBS1_9PROT5.710e-16490.26Acyl-CoA dehydrogenase n=10 Tax=root TaxID=1 RepID... [more]
A0A062U2U9_9PROT1.040e-15988.01Acyl-CoA dehydrogenase n=3 Tax=Hyphomonas TaxID=85... [more]
A0A069E567_9PROT5.330e-14882.77Acyl-CoA dehydrogenase family protein n=8 Tax=Hyph... [more]
A0A059FQ94_9PROT3.900e-14380.52Acyl-CoA dehydrogenase family protein n=4 Tax=Hyph... [more]
A0A062VGB0_9PROT2.000e-13877.53Acyl-CoA dehydrogenase family protein n=7 Tax=Alph... [more]
UPI001C7FBBCE2.190e-13575.28acyl-CoA dehydrogenase family protein n=1 Tax=Hyph... [more]
UPI000A06FFAD1.430e-12170.79acyl-CoA dehydrogenase family protein n=1 Tax=Henr... [more]
UPI000A058F221.900e-11969.29acyl-CoA dehydrogenase family protein n=1 Tax=Henr... [more]
UPI0008DA1EAB2.200e-11868.16acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Hyphomonas... [more]
A0A399RCF2_9PROT3.110e-11868.16Acyl-CoA dehydrogenase n=6 Tax=Hyphomonadaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102553contigL-digitata_M_contig102553:3..803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207058.L53_09040
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Model size801
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00052,RC00068,RC00076,RC00095,RC00148,RC00246
KEGG koko:K00249
KEGG ReactionR00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754
KEGG Pathwayko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320
KEGG ModuleM00013,M00036,M00087
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.38e-178
EggNOG OGsCOG1960@1|root,COG1960@2|Bacteria,1MUBH@1224|Proteobacteria,2TVBB@28211|Alphaproteobacteria,43WMP@69657|Hyphomonadaceae
EC1.3.8.7
Descriptionacyl-CoA dehydrogenase
Cds size801
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.6511025-CDS-L-digitata_M_contig102553:2..8031682406630.6511025-CDS-L-digitata_M_contig102553:2..803Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102553 3..803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102553.1.1prot_L-digitata_M_contig102553.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102553 3..803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102553.1.1

>prot_L-digitata_M_contig102553.1.1 ID=prot_L-digitata_M_contig102553.1.1|Name=mRNA_L-digitata_M_contig102553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=267bp
MTFLLTEDQEMLRDTAMAFARDEMPVTRLRQLRDSGANGVDAETRQKLAE
LGFFGVIIPDEPGGEHFGLVGLGQVLEAQGRTLAPTPVLQTALIAASALQ
LGGSAEQQAEWLPKIAGGATSFALALDETAHFNPLGVAIEAESNGQGYTL
NGMKRFVPDAHHAEMLIVVARTFGEAGDRHGLTLFMVPADAKGVSIQALN
SVDSHGAAHVVLEDVMVPATAVIGAVDKGADVLEPVLDRAAIGQAAEMLG
SADAAFEMTLEYLNNRK
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mRNA from alignment at L-digitata_M_contig102553:3..803-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102553.1.1 ID=mRNA_L-digitata_M_contig102553.1.1|Name=mRNA_L-digitata_M_contig102553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=801bp|location=Sequence derived from alignment at L-digitata_M_contig102553:3..803- (Laminaria digitata LdigPH10_18mv male)
ATGACGTTCCTTTTGACGGAAGACCAGGAAATGCTGCGCGACACCGCTAT GGCGTTCGCGCGTGACGAAATGCCAGTGACTCGCCTGCGCCAACTGCGCG ACAGTGGAGCAAATGGCGTAGACGCAGAGACACGACAGAAACTCGCCGAA CTCGGCTTCTTTGGTGTGATCATTCCGGATGAGCCAGGTGGTGAACACTT CGGCCTGGTCGGACTTGGCCAGGTTCTGGAAGCGCAAGGCCGTACACTGG CGCCAACACCGGTTCTCCAGACAGCCCTGATCGCGGCCAGCGCCCTGCAG CTGGGCGGCAGCGCAGAACAGCAGGCGGAATGGTTGCCCAAGATTGCCGG AGGCGCAACCAGTTTTGCCTTGGCGCTCGACGAAACTGCGCATTTCAATC CGCTGGGCGTCGCCATCGAGGCGGAGAGCAATGGGCAAGGCTACACGTTG AACGGCATGAAGCGGTTTGTGCCGGACGCTCATCATGCCGAGATGCTGAT TGTTGTGGCGCGTACCTTTGGCGAAGCAGGTGACCGTCACGGCCTTACGC TGTTCATGGTTCCGGCGGATGCAAAGGGGGTGTCTATCCAAGCGCTGAAC TCCGTCGACTCTCACGGCGCGGCTCATGTCGTGCTGGAAGATGTGATGGT TCCGGCAACAGCTGTCATCGGCGCAGTGGACAAAGGCGCAGACGTATTGG AGCCGGTTCTGGACCGGGCGGCGATCGGCCAGGCGGCGGAAATGCTGGGA AGTGCAGATGCGGCGTTTGAGATGACATTGGAGTACCTCAACAACCGGAA A
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Coding sequence (CDS) from alignment at L-digitata_M_contig102553:3..803-

>mRNA_L-digitata_M_contig102553.1.1 ID=mRNA_L-digitata_M_contig102553.1.1|Name=mRNA_L-digitata_M_contig102553.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=801bp|location=Sequence derived from alignment at L-digitata_M_contig102553:3..803- (Laminaria digitata LdigPH10_18mv male)
ATGACGTTCCTTTTGACGGAAGACCAGGAAATGCTGCGCGACACCGCTAT
GGCGTTCGCGCGTGACGAAATGCCAGTGACTCGCCTGCGCCAACTGCGCG
ACAGTGGAGCAAATGGCGTAGACGCAGAGACACGACAGAAACTCGCCGAA
CTCGGCTTCTTTGGTGTGATCATTCCGGATGAGCCAGGTGGTGAACACTT
CGGCCTGGTCGGACTTGGCCAGGTTCTGGAAGCGCAAGGCCGTACACTGG
CGCCAACACCGGTTCTCCAGACAGCCCTGATCGCGGCCAGCGCCCTGCAG
CTGGGCGGCAGCGCAGAACAGCAGGCGGAATGGTTGCCCAAGATTGCCGG
AGGCGCAACCAGTTTTGCCTTGGCGCTCGACGAAACTGCGCATTTCAATC
CGCTGGGCGTCGCCATCGAGGCGGAGAGCAATGGGCAAGGCTACACGTTG
AACGGCATGAAGCGGTTTGTGCCGGACGCTCATCATGCCGAGATGCTGAT
TGTTGTGGCGCGTACCTTTGGCGAAGCAGGTGACCGTCACGGCCTTACGC
TGTTCATGGTTCCGGCGGATGCAAAGGGGGTGTCTATCCAAGCGCTGAAC
TCCGTCGACTCTCACGGCGCGGCTCATGTCGTGCTGGAAGATGTGATGGT
TCCGGCAACAGCTGTCATCGGCGCAGTGGACAAAGGCGCAGACGTATTGG
AGCCGGTTCTGGACCGGGCGGCGATCGGCCAGGCGGCGGAAATGCTGGGA
AGTGCAGATGCGGCGTTTGAGATGACATTGGAGTACCTCAACAACCGGAA
A
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