mRNA_L-digitata_M_contig102545.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102545.1.1
Unique NamemRNA_L-digitata_M_contig102545.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102545.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102545contigL-digitata_M_contig102545:291..446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK0
PFAMsHelitron_like_N,PIF1
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000384
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size156
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.5616448-CDS-L-digitata_M_contig102545:290..4461682406630.5616448-CDS-L-digitata_M_contig102545:290..446Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102545 291..446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102545.1.1prot_L-digitata_M_contig102545.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102545 291..446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102545.1.1

>prot_L-digitata_M_contig102545.1.1 ID=prot_L-digitata_M_contig102545.1.1|Name=mRNA_L-digitata_M_contig102545.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=52bp
MHVCDKCFRSLKVDRIPEVALAIGVWVSKLPAKFDNATRSPPSLLLFLSH
VA
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mRNA from alignment at L-digitata_M_contig102545:291..446-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102545.1.1 ID=mRNA_L-digitata_M_contig102545.1.1|Name=mRNA_L-digitata_M_contig102545.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig102545:291..446- (Laminaria digitata LdigPH10_18mv male)
ATGCATGTGTGTGACAAATGTTTCCGATCTTTGAAGGTCGACCGCATACC
AGAAGTTGCACTTGCCATTGGAGTTTGGGTGAGTAAACTACCTGCAAAGT
TTGACAACGCGACGAGGTCTCCGCCTTCTCTTCTCTTATTTCTTTCACAC
GTGGCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig102545:291..446-

>mRNA_L-digitata_M_contig102545.1.1 ID=mRNA_L-digitata_M_contig102545.1.1|Name=mRNA_L-digitata_M_contig102545.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig102545:291..446- (Laminaria digitata LdigPH10_18mv male)
ATGCATGTGTGTGACAAATGTTTCCGATCTTTGAAGGTCGACCGCATACC
AGAAGTTGCACTTGCCATTGGAGTTTGGGTGAGTAAACTACCTGCAAAGT
TTGACAACGCGACGAGGTCTCCGCCTTCTCTTCTCTTATTTCTTTCACAC
GTGGCC
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