mRNA_L-digitata_M_contig10254.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10254.3.1
Unique NamemRNA_L-digitata_M_contig10254.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: D7FQX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX6_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 6.810e-25
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:   67 KALRKARETESTRRQRIRQYYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            +A R+A + E TRRQRIRQYYNGA+HGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH
Sbjct:  224 RARRQAHDAEVTRRQRIRQYYNGATHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 285
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BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: A0A836CA36_9STRA (CDC45 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA36_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.410e-10
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   70 ALRKARETESTRRQRIRQYYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            A+ +AR   + RR+R+R+YY   S+G  +++ L+ +A +  KDTNDLLW+AIVGLTDQ++H
Sbjct:  375 AIEEARRVPAERRRRLREYYASDSYGLGASLVLYNLAERRAKDTNDLLWMAIVGLTDQFVH 435
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BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: W7TEF5_9STRA (Cell division control protein 45 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEF5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.800e-9
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  103 RRQRIRQYYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            RR+RI QYY GA HG+ SA+ L  ++ ++N+D+ D LWLAIVGLTD  +H
Sbjct:  323 RRRRIEQYYMGAFHGAPSALVLHRLSQEVNRDSRDTLWLAIVGLTDLLVH 372
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BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: A0A7S0E2Q0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E2Q0_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 1.150e-8
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   88 ETESTRRQRIRQYYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            E  S  R+ ++ YY  + HG++SAV L+++   LNK +NDLLWL IVGLTDQ +H
Sbjct:  215 ERRSEMRRLVKHYYAASWHGTSSAVILYSLVQALNKSSNDLLWLTIVGLTDQLVH 269
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BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: A0A2C9LL05_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LL05_BIOGL)

HSP 1 Score: 56.2 bits (134), Expect = 3.820e-8
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  124 YYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            Y    S+G+++A+ +F +A +L+KDTN LLWLAIVG+TDQYIH
Sbjct:   56 YTKFTSYGTSAALVMFDLAWKLSKDTNTLLWLAIVGVTDQYIH 98
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BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: UPI001E1E04E6 (cell division control protein 45 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E04E6)

HSP 1 Score: 58.5 bits (140), Expect = 4.200e-8
Identity = 27/56 (48.21%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   85 RETESTRRQRIRQYYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            R+ E  R + + +Y   +++G++SA+ +F +A +++KD+NDLLWLAIVG+TDQYIH
Sbjct:  174 RKWEENRNKVLFEYMQFSTYGTSSALLMFELAWKISKDSNDLLWLAIVGVTDQYIH 229
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BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: A0A8C9U183_SCLFO (CDC45 cell division cycle 45 homolog (S. cerevisiae) n=6 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9U183_SCLFO)

HSP 1 Score: 58.2 bits (139), Expect = 5.740e-8
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   85 RETESTRRQRIRQYYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            RE E+ RR+ +  Y     HG+ASAV LF +A  ++KDT D+LW AI+GLTDQ++H
Sbjct:  179 REWEARRREILFDYEQYEYHGTASAVVLFELAWVMSKDTKDMLWWAIIGLTDQWVH 234
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BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: A0A6J2QEN3_COTGO (cell division control protein 45 homolog n=4 Tax=Perciformes TaxID=8111 RepID=A0A6J2QEN3_COTGO)

HSP 1 Score: 57.8 bits (138), Expect = 7.850e-8
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   85 RETESTRRQRIRQYYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            RE E+ RR+ + +Y     HG+++AV LF +A  L KDT D+LW AI+GLTDQ++H
Sbjct:  178 REWEARRREILFEYEQYEYHGTSAAVMLFELAWVLTKDTKDMLWWAIIGLTDQWVH 233
[Close]
BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: UPI001EE5FB52 (cell division control protein 45 homolog n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5FB52)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-7
Identity = 23/43 (53.49%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:  124 YYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            Y    S+G++S++ +F MA +++KDTNDLLWLAI+G++DQY+H
Sbjct:  184 YTKFTSYGTSSSLLMFEMAWKMSKDTNDLLWLAIIGVSDQYVH 226
[Close]
BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Match: UPI001EE5E9B9 (cell division control protein 45 homolog n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5E9B9)

HSP 1 Score: 57.4 bits (137), Expect = 1.080e-7
Identity = 23/43 (53.49%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:  124 YYNGASHGSASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH 252
            Y    S+G++S++ +F MA +++KDTNDLLWLAI+G++DQY+H
Sbjct:  214 YTKFTSYGTSSSLLMFEMAWKMSKDTNDLLWLAIIGVSDQYVH 256
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10254.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQX6_ECTSI6.810e-2587.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CA36_9STRA5.410e-1049.18CDC45 family n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TEF5_9STRA4.800e-956.00Cell division control protein 45 n=2 Tax=Monodopsi... [more]
A0A7S0E2Q0_9EUKA1.150e-850.91Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A2C9LL05_BIOGL3.820e-858.14Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
UPI001E1E04E64.200e-848.21cell division control protein 45 homolog n=1 Tax=M... [more]
A0A8C9U183_SCLFO5.740e-851.79CDC45 cell division cycle 45 homolog (S. cerevisia... [more]
A0A6J2QEN3_COTGO7.850e-850.00cell division control protein 45 homolog n=4 Tax=P... [more]
UPI001EE5FB521.060e-753.49cell division control protein 45 homolog n=1 Tax=H... [more]
UPI001EE5E9B91.080e-753.49cell division control protein 45 homolog n=2 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10254contigL-digitata_M_contig10254:6546..7576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQX6
Preferred nameCDC45
PFAMsCDC45
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K06628
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000082,GO:0000083,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006270,GO:0006275,GO:0006277,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022607,GO:0023052,GO:0030261,GO:0031261,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031573,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033260,GO:0033262,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036387,GO:0036388,GO:0042770,GO:0043138,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044786,GO:0044843,GO:0045786,GO:0045787,GO:0045930,GO:0045931,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0060968,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071162,GO:0071163,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072428,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0097159,GO:0140097,GO:1900087,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902275,GO:1902292,GO:1902299,GO:1902315,GO:1902402,GO:1902403,GO:1902576,GO:1902806,GO:1902808,GO:1902969,GO:1902975,GO:1902977,GO:1903047,GO:1903463,GO:1903464,GO:1903506,GO:1990837,GO:2000045,GO:2000104,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue1.12e-25
EggNOG OGsKOG2475@1|root,KOG2475@2759|Eukaryota
Descriptionmitotic DNA replication preinitiation complex assembly
Cds size252
COG categoryS
BRITEko00000,ko00001,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.52001-CDS-L-digitata_M_contig10254:6545..66111682406630.52001-CDS-L-digitata_M_contig10254:6545..6611Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10254 6546..6611 -
1682406630.5332117-CDS-L-digitata_M_contig10254:7390..75761682406630.5332117-CDS-L-digitata_M_contig10254:7390..7576Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10254 7391..7576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10254.3.1prot_L-digitata_M_contig10254.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10254 6546..7576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10254.3.1

>prot_L-digitata_M_contig10254.3.1 ID=prot_L-digitata_M_contig10254.3.1|Name=mRNA_L-digitata_M_contig10254.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=84bp
DKSSSERPKVQAGRKRKRQTAEKALRKARETESTRRQRIRQYYNGASHGS
ASAVQLFAMAMQLNKDTNDLLWLAIVGLTDQYIH
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mRNA from alignment at L-digitata_M_contig10254:6546..7576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10254.3.1 ID=mRNA_L-digitata_M_contig10254.3.1|Name=mRNA_L-digitata_M_contig10254.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1031bp|location=Sequence derived from alignment at L-digitata_M_contig10254:6546..7576- (Laminaria digitata LdigPH10_18mv male)
GACAAATCGTCGTCTGAGCGCCCGAAGGTGCAAGCAGGGAGAAAGCGCAA
AAGGCAGACGGCAGAGAAGGCACTCCGTAAAGCGCGAGAAACTGAGTCCA
CACGGCGGCAACGCATTCGTCAGTACTACAACGGCGCCAGTCACGGATCG
GCGTCCGCTGTCCAGTTGTTCGCCATGGCTATGCAAGTGAGTTCAAGGAG
AGGTCCAATGTTTTGTCGATGCTGGCAATGATGCGAGGAGAGTTTGGTAT
AAGGAGGGAAAGGGGAGGCCCTCGCAGGCGTCGGAAAGACGTCATGGGCG
ACTACAGTAGCACTTTTGAGGCAACGGTAACGACATGGGGTGGGAAATAC
CCATGCCGACGCAATCGAAACAGCTCACAAGAGCGTATAAAAGCGTACGT
GCGATACAGTAGGGTAGATTGTTGTTCACGCAAGTCCCTGTGTGGTTGGA
CTAGAGGTTTTCGTTCTGCGTTAACCCATTGGGACTTCAGAGGGAGAAAA
TTATGGTACTAAATGATGATTTCAGCATCAGCCAGGCGGAGAAGCACAAA
CTGCTGGCGTATAGCGTGTGTCCGAACTACAACACAAGGAGAGAACGACG
CGAGCGCACGACGGAACCAGACGTAGTGCTGCGCGATCACATCAGACGGT
TGATATGACAGCACTTGCCATTTTGTTTGTCGCTGTACCCGGGTTCCAAA
AGGGTTAACCTCCCACGATTTGTGGCAAAGCAAGGTGGCACGCATGGTAG
AGCCCGTCAGTGGCGAATGAAAGGCTTGAATATTTACGTCATGATGATAA
CCTGGACTAGAGGGAGCCCTGCTCTTGAGAGACGTCCGATTGCTTCGAAC
CGAAGCATCCAAGTATGGCAGGGGGGCACGCGCAAGGTTTTCGTTTATGT
TTTGCCAGGGCTTCTCCAACGCAACGTTCAAACGCATGTACTGCCTGTGT
TTTTGTCTCGTGCAGCTCAACAAGGACACCAATGACCTGCTGTGGCTTGC
CATCGTGGGCCTGACGGACCAGTACATCCAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10254:6546..7576-

>mRNA_L-digitata_M_contig10254.3.1 ID=mRNA_L-digitata_M_contig10254.3.1|Name=mRNA_L-digitata_M_contig10254.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=252bp|location=Sequence derived from alignment at L-digitata_M_contig10254:6546..7576- (Laminaria digitata LdigPH10_18mv male)
GACAAATCGTCGTCTGAGCGCCCGAAGGTGCAAGCAGGGAGAAAGCGCAA
AAGGCAGACGGCAGAGAAGGCACTCCGTAAAGCGCGAGAAACTGAGTCCA
CACGGCGGCAACGCATTCGTCAGTACTACAACGGCGCCAGTCACGGATCG
GCGTCCGCTGTCCAGTTGTTCGCCATGGCTATGCAACTCAACAAGGACAC
CAATGACCTGCTGTGGCTTGCCATCGTGGGCCTGACGGACCAGTACATCC
AC
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