mRNA_L-digitata_M_contig10253.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: D8LCM6_ECTSI (Methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM6_ECTSI) HSP 1 Score: 199 bits (506), Expect = 1.740e-60 Identity = 99/136 (72.79%), Postives = 117/136 (86.03%), Query Frame = 1
Query: 1 QVRLKELGSATVLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIWERHEDSIYQRMAAVLETLSPG 408
+V+ KE G VLDVASAGGEPAITIAK +P ATVHATD APAM+DLIR+RAAE GVSNV A+VADGE+L GFGDGSVDAVTCTWGL+FMP+W+RA+QEFSRVL+ DG+V + +WER E S++QRM V+ETL PG
Sbjct: 103 KVQPKEPGKQVVLDVASAGGEPAITIAKAMPGATVHATDFAPAMMDLIRKRAAEEGVSNVVASVADGEALTGFGDGSVDAVTCTWGLLFMPNWQRAIQEFSRVLKRDGVVAVTLWERQEGSVFQRMRNVVETLVPG 238
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: A0A6H5JCB5_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCB5_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.030e-37 Identity = 80/144 (55.56%), Postives = 97/144 (67.36%), Query Frame = 1
Query: 1 QVRLKELGSATVLDVASAGGEPAITIAKV--------LPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIWERHEDSIYQRMAAVLETLSPG 408
+V+ KE VLDVASAGGEPAITIAK +P AT+HATD AP M+DLIR+RA E GVSNV A+VADGE+L GFGD +VDAVTCTWGL+FMP+W+RA+QE S++QR+ V+ETL PG
Sbjct: 102 KVQPKEPEKQVVLDVASAGGEPAITIAKAREGIYRKAMPGATIHATDFAPVMIDLIRKRAVEEGVSNVVASVADGEALTGFGDETVDAVTCTWGLLFMPNWQRAIQE--------------------GSVFQRIRNVVETLVPG 225
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: I0Z1C2_COCSC (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1C2_COCSC) HSP 1 Score: 110 bits (274), Expect = 9.470e-27 Identity = 60/129 (46.51%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 22 GSATVLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIW-ERHEDSIYQRMAAVLETLSP 405
G+ +LDVAS GEP I++AK+ P TV TDIA M+ + RA + N AVADGE+L+ FGD + D VTC GLMFMP+++RA+ EF RVL+ DGL M++ W E + ++ M AV ++P
Sbjct: 51 GNPQILDVASGTGEPGISLAKLFPGGTVTITDIAEGMIAGAKGRADRLSLKNARFAVADGENLSQFGDATFDVVTCNAGLMFMPNYERALAEFRRVLKPDGLAMVSAWGEEEQTNVASLMLAVQRAVAP 179
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: A0A835YPT1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT1_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.290e-26 Identity = 66/155 (42.58%), Postives = 96/155 (61.94%), Query Frame = 1
Query: 10 LKELGSATVLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRRAA----EAGVSNVTAAVADGES-------------------LAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIWERHEDSIYQRMAAVLETLSP 405
+K G +VLDVASA GEPA++IA++LP ATVHATD +P MV+ + R A G++NV VADGES L+ F D S+DA+TC++G+MFMP W++A++EF RVL+ +G+ +I +W +++ QR A + L P
Sbjct: 70 IKGDGPPSVLDVASAAGEPAVSIARLLPQATVHATDYSPGMVEALNTRVAVLRETEGLANVHTGVADGESDILTLLCAVVAACICRAQNLSQFEDASMDAITCSFGIMFMPAWQKAIREFYRVLKPNGIAIINVWGPEQEA--QRCACIRLWLLP 222
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: A0A2P6TSJ3_CHLSO (Methyltransferase type 11 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSJ3_CHLSO) HSP 1 Score: 108 bits (270), Expect = 4.460e-26 Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1
Query: 10 LKELGSATVLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIWERHE 357
L+ A +LDVASA GEPA+T+A LP A + +TD+A A ++L + RAA AG++NV+ AD E L +GD S DAVTC+ GLMFMP ++ AV+EF+RVL+ GL A+W+ +
Sbjct: 49 LQGKAGARILDVASASGEPALTLAVALPQAQLVSTDLAHAFLELGKSRAARAGLTNVSFETADAEDLHRYGDASFDAVTCSLGLMFMPSFELAVKEFARVLKPGGLFAAAVWQSED 164
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: A0A8J9RMN2_9CHLO (Probable ubiquinone/menaquinone biosynthesis C-methyltransferase Ub at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RMN2_9CHLO) HSP 1 Score: 105 bits (262), Expect = 6.020e-25 Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 22 GSATVLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIW 345
GS +LD+AS GEP + +AK+ PD V TD+A M+ +RRA GV N + AVAD E L+ +GD + D VTC GLMFMP+++RA+ EF RVL+ GL M+++W
Sbjct: 54 GSPQILDIASGSGEPGLQLAKLFPDGRVTMTDLAEGMIIEAKRRADLHGVKNASFAVADAEDLSHYGDATFDVVTCNCGLMFMPNYERALSEFRRVLKPGGLAMLSVW 161
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: A0A5J4Y136_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y136_9CHLO) HSP 1 Score: 101 bits (252), Expect = 1.750e-22 Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1
Query: 34 VLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIW 345
VLD+AS G PA+ + + +P+A+V ATD++PA V LI AA GV+NVTA AD + L F D + DAVTC++GLMFMPD ++A+QE RVL+ GL + +W
Sbjct: 295 VLDLASNAGSPAVPLGQAIPNASVVATDLSPASVSLISEYAASEGVTNVTAQPADAQHLQEFDDNTFDAVTCSYGLMFMPDHQKALQEAHRVLKLGGLYVATVW 398
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: I0Z1C3_COCSC (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1C3_COCSC) HSP 1 Score: 94.0 bits (232), Expect = 6.410e-21 Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 7 RLKELGSATVLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIW 345
R + G+ +LDVAS GEP I++A+ P+ +V TD+A M+ + RA V N + VAD E L+ F D + D VTC GLMFMP+++RA+ EF RVL+ DGL +++ W
Sbjct: 46 RAEVKGNPLILDVASGTGEPGISLARQFPNGSVIMTDLADGMIAGAKGRAERLSVKNASFDVADAEDLSQFKDATFDVVTCNCGLMFMPNYERALAEFRRVLKPDGLALMSAW 158
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: A0A2P6TIN7_CHLSO (Methyltransferase type 11 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIN7_CHLSO) HSP 1 Score: 92.0 bits (227), Expect = 7.410e-20 Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 10 LKELGSATVLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAI 342
L+ A +LDVASA GEPA ++A LP ATVHATD+ P V L RA G+ N+ VAD E L F D S DAV C GLMF+P+ A+ F RVL+ G ++I +
Sbjct: 30 LRGRADAQILDVASASGEPAASLAAALPLATVHATDLTPRFVQLGAARAQRLGLRNMRCQVADAERLEPFADASCDAVCCCMGLMFIPNVAAALAAFDRVLKPGGALVITV 140
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Match: A0A154VU84_9PROT (Uncharacterized protein n=1 Tax=Oceanibaculum pacificum TaxID=580166 RepID=A0A154VU84_9PROT) HSP 1 Score: 90.5 bits (223), Expect = 2.960e-19 Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 34 VLDVASAGGEPAITIAK-VLPDATVHATDIAPAMVDLIRRRAAEAGVSNVTAAVADGESLAGFGDGSVDAVTCTWGLMFMPDWKRAVQEFSRVLRSDGLVMIAIWERHEDSIY--QRMAAVLETLSP 405
VLD+AS GEPA++ AK V P V ATD+APAM+ IRRRA AG+SN+ +AD E+L F D S D VTC +GLMF PD +A++E RVL+ G +W D+ + A +ETL P
Sbjct: 54 VLDLASGAGEPALSAAKRVGPGGQVLATDLAPAMMAGIRRRAKAAGLSNIGFEIADAEALP-FPDASFDRVTCRFGLMFFPDPLKALRESLRVLKPGGRAAFMVWGPLADNALFAVTLEAAIETLIP 179 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10253.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10253.1.1 >prot_L-digitata_M_contig10253.1.1 ID=prot_L-digitata_M_contig10253.1.1|Name=mRNA_L-digitata_M_contig10253.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=136bp QVRLKELGSATVLDVASAGGEPAITIAKVLPDATVHATDIAPAMVDLIRRback to top mRNA from alignment at L-digitata_M_contig10253:199..3136- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10253.1.1 ID=mRNA_L-digitata_M_contig10253.1.1|Name=mRNA_L-digitata_M_contig10253.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2938bp|location=Sequence derived from alignment at L-digitata_M_contig10253:199..3136- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10253:199..3136- >mRNA_L-digitata_M_contig10253.1.1 ID=mRNA_L-digitata_M_contig10253.1.1|Name=mRNA_L-digitata_M_contig10253.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=408bp|location=Sequence derived from alignment at L-digitata_M_contig10253:199..3136- (Laminaria digitata LdigPH10_18mv male)back to top |