mRNA_L-digitata_M_contig102514.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102514.1.1
Unique NamemRNA_L-digitata_M_contig102514.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102514contigL-digitata_M_contig102514:56..910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size855
Hectar predicted targeting categoryother localisation
Exons1
Cds size843
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.3447933-UTR-L-digitata_M_contig102514:55..671682406630.3447933-UTR-L-digitata_M_contig102514:55..67Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig102514 56..67 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.352219-CDS-L-digitata_M_contig102514:67..9101682406630.352219-CDS-L-digitata_M_contig102514:67..910Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102514 68..910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102514.1.1prot_L-digitata_M_contig102514.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102514 68..910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102514.1.1

>prot_L-digitata_M_contig102514.1.1 ID=prot_L-digitata_M_contig102514.1.1|Name=mRNA_L-digitata_M_contig102514.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=281bp
MLNVEGSGVTLESANLKAKLDMGAARALEQYELRSAMIEASFKDKKLTIS
PSHIRSPYLDADIEGYAELGGELDMKLSVVADERHDREFSIPGVGELRQQ
HLTLDASATGNLDLETEDPVAMVRDMRLKASWDVADLYLEEDGVGESKAK
IDMTLTSPAENKRHVDYDVEVSARDLSAPSAEARAAMADLDSEGEFTFDL
PLEDPLSLLDSFKAEAHIKARGVSAPGVSVSSLDANATIAPTARGRSRYT
LDASGGGIRLPDATFYLGSGSTNLSGEVSLD
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mRNA from alignment at L-digitata_M_contig102514:56..910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102514.1.1 ID=mRNA_L-digitata_M_contig102514.1.1|Name=mRNA_L-digitata_M_contig102514.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=855bp|location=Sequence derived from alignment at L-digitata_M_contig102514:56..910+ (Laminaria digitata LdigPH10_18mv male)
ATCCTGAACGGCATGTTGAACGTCGAGGGGAGCGGCGTGACGCTCGAGTC
GGCCAACCTGAAGGCGAAGCTCGACATGGGGGCGGCGCGCGCGCTGGAGC
AGTACGAGCTCCGCAGCGCCATGATCGAGGCGAGCTTTAAAGACAAAAAG
CTCACCATCAGCCCCTCTCATATTCGCTCCCCCTACCTCGACGCGGACAT
CGAGGGATACGCCGAGCTCGGCGGTGAGCTCGATATGAAGCTCTCCGTGG
TCGCTGACGAGCGACACGATCGCGAGTTCTCCATCCCGGGCGTGGGCGAG
CTCAGGCAGCAACACCTCACGCTCGACGCGAGCGCGACGGGGAACCTCGA
CCTCGAGACAGAAGACCCCGTGGCGATGGTGCGCGACATGCGCCTGAAAG
CGAGCTGGGACGTGGCCGACCTCTACCTGGAAGAGGATGGCGTGGGCGAG
TCGAAGGCAAAGATCGACATGACCCTCACCTCACCCGCAGAGAACAAGCG
CCACGTGGACTACGATGTCGAGGTCTCGGCGCGCGATCTCTCGGCGCCGA
GCGCCGAGGCGCGCGCCGCCATGGCGGACCTCGACAGCGAGGGCGAGTTC
ACGTTCGACCTCCCGCTCGAGGATCCGCTCTCGCTGCTCGACTCCTTCAA
GGCAGAAGCCCACATCAAGGCGCGCGGCGTGAGCGCGCCGGGCGTGAGCG
TCTCGAGCCTCGACGCGAACGCCACGATCGCGCCGACCGCGCGCGGGCGC
TCTCGATACACGCTCGACGCGAGCGGGGGCGGGATCCGACTCCCGGACGC
GACGTTCTATCTGGGCAGCGGATCGACAAACCTTTCAGGGGAGGTCTCGC
TCGAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig102514:56..910+

>mRNA_L-digitata_M_contig102514.1.1 ID=mRNA_L-digitata_M_contig102514.1.1|Name=mRNA_L-digitata_M_contig102514.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=843bp|location=Sequence derived from alignment at L-digitata_M_contig102514:56..910+ (Laminaria digitata LdigPH10_18mv male)
ATGTTGAACGTCGAGGGGAGCGGCGTGACGCTCGAGTCGGCCAACCTGAA
GGCGAAGCTCGACATGGGGGCGGCGCGCGCGCTGGAGCAGTACGAGCTCC
GCAGCGCCATGATCGAGGCGAGCTTTAAAGACAAAAAGCTCACCATCAGC
CCCTCTCATATTCGCTCCCCCTACCTCGACGCGGACATCGAGGGATACGC
CGAGCTCGGCGGTGAGCTCGATATGAAGCTCTCCGTGGTCGCTGACGAGC
GACACGATCGCGAGTTCTCCATCCCGGGCGTGGGCGAGCTCAGGCAGCAA
CACCTCACGCTCGACGCGAGCGCGACGGGGAACCTCGACCTCGAGACAGA
AGACCCCGTGGCGATGGTGCGCGACATGCGCCTGAAAGCGAGCTGGGACG
TGGCCGACCTCTACCTGGAAGAGGATGGCGTGGGCGAGTCGAAGGCAAAG
ATCGACATGACCCTCACCTCACCCGCAGAGAACAAGCGCCACGTGGACTA
CGATGTCGAGGTCTCGGCGCGCGATCTCTCGGCGCCGAGCGCCGAGGCGC
GCGCCGCCATGGCGGACCTCGACAGCGAGGGCGAGTTCACGTTCGACCTC
CCGCTCGAGGATCCGCTCTCGCTGCTCGACTCCTTCAAGGCAGAAGCCCA
CATCAAGGCGCGCGGCGTGAGCGCGCCGGGCGTGAGCGTCTCGAGCCTCG
ACGCGAACGCCACGATCGCGCCGACCGCGCGCGGGCGCTCTCGATACACG
CTCGACGCGAGCGGGGGCGGGATCCGACTCCCGGACGCGACGTTCTATCT
GGGCAGCGGATCGACAAACCTTTCAGGGGAGGTCTCGCTCGAT
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