mRNA_L-digitata_M_contig102512.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102512.1.1
Unique NamemRNA_L-digitata_M_contig102512.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A6H5K1G5_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.310e-23
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:   13 QVQAANGGTAVASAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKNT 174
            +V A +GGTA ASA+VHNTGCGCSKSACLKRYCECFNGGIACS+KCRCKDCKNT
Sbjct:   56 KVLATSGGTATASALVHNTGCGCSKSACLKRYCECFNGGIACSNKCRCKDCKNT 109
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BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: D8LP28_ECTSI (TSO1 transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP28_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.350e-12
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   52 AVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKNTVVV 183
            AVVH TGC C KSACLK+YCECFN G+ACS+KC C  C+NTV +
Sbjct:   93 AVVHKTGCKCRKSACLKKYCECFNKGVACSEKCNCVGCRNTVAL 136
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BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A6H5JPL0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.860e-12
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   52 AVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKNTVVV 183
            AVVH TGC C KSACLK+YCECFN G+ACS+KC C  C+NTV +
Sbjct:  447 AVVHKTGCKCRKSACLKKYCECFNKGVACSEKCNCVACRNTVAL 490
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BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A7S3FM75_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FM75_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 1.660e-10
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   13 QVQAANGGTAVASAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKN 171
            ++Q+ + G +V  ++ HN GC C +S CLKRYCECF   I CS+ CRCKDCKN
Sbjct:  166 KIQSMSPGMSVQDSLKHNKGCNCKRSFCLKRYCECFQANIFCSENCRCKDCKN 218
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BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A830D4A7_9LAMI (Protein tesmin/tso1-like cxc 5 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D4A7_9LAMI)

HSP 1 Score: 70.1 bits (170), Expect = 2.770e-10
Identity = 31/50 (62.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   22 AANGGTAVASAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKN 171
            AAN        V HN GC C KS CLKRYCECF   I CSDKC+C DCKN
Sbjct:  177 AANSPHGATDGVEHNKGCNCKKSGCLKRYCECFQANILCSDKCKCVDCKN 226
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BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A2P6VRN3_9CHLO (Tesmin TSO1-like CXC 5 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRN3_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 3.470e-10
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   61 HNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKN 171
            HN GC C KS CLK+YCECF  GIACSD C+C DCKN
Sbjct:  194 HNKGCNCKKSGCLKKYCECFQAGIACSDNCKCLDCKN 230
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BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A7S0DST4_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DST4_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 3.570e-10
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   46 ASAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKNT 174
            ASA+VHN GC C KS C K+YCECF  GI CS++C+C DC+NT
Sbjct:  100 ASALVHNKGCQCKKSHCRKKYCECFQAGILCSERCKCHDCENT 142
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BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A5K0VWG5_9MAGN (CRC domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0VWG5_9MAGN)

HSP 1 Score: 65.5 bits (158), Expect = 3.680e-10
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   61 HNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKN 171
            HN GC C KS CLK+YCECF  G+ CS+ C+C DCKN
Sbjct:   12 HNKGCHCKKSGCLKKYCECFQAGVLCSENCKCMDCKN 48
[Close]
BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A5A7QW20_STRAF (Tesmin/TSO1-like CXC domain-containing protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QW20_STRAF)

HSP 1 Score: 68.9 bits (167), Expect = 5.980e-10
Identity = 28/39 (71.79%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   55 VVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKN 171
            V HN GC C KS CLKRYCECF   I CSDKC+C DCKN
Sbjct:  225 VEHNKGCHCKKSGCLKRYCECFQANILCSDKCKCMDCKN 263
[Close]
BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Match: A0A5B8MM52_9CHLO (CRC domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MM52_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 6.320e-10
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   13 QVQAANGGTAVASAVVHNTGCGCSKSACLKRYCECFNGGIACSDKCRCKDCKN 171
            ++Q+ + G ++  ++ HN GC C +S CLKRYCECF   I CSD CRC DCKN
Sbjct:  182 KIQSMSPGMSIQDSLKHNKGCNCKRSFCLKRYCECFQANIYCSDNCRCTDCKN 234
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102512.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1G5_9PHAE3.310e-2387.04CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LP28_ECTSI5.350e-1270.45TSO1 transcription factor (Partial) (Fragment) n=1... [more]
A0A6H5JPL0_9PHAE7.860e-1270.45CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3FM75_9CHLO1.660e-1054.72Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A830D4A7_9LAMI2.770e-1062.00Protein tesmin/tso1-like cxc 5 n=1 Tax=Phtheirospe... [more]
A0A2P6VRN3_9CHLO3.470e-1072.97Tesmin TSO1-like CXC 5 n=1 Tax=Micractinium conduc... [more]
A0A7S0DST4_9EUKA3.570e-1065.12Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A5K0VWG5_9MAGN3.680e-1064.86CRC domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A5A7QW20_STRAF5.980e-1071.79Tesmin/TSO1-like CXC domain-containing protein n=1... [more]
A0A5B8MM52_9CHLO6.320e-1052.83CRC domain-containing protein n=1 Tax=Chloropicon ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102512contigL-digitata_M_contig102512:162..840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LP28
PFAMsHA,TCR
Model size679
Max annot lvl2759|Eukaryota
KEGG koko:K21776
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006355,GO:0006996,GO:0007049,GO:0007140,GO:0007276,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045893,GO:0045935,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0051037,GO:0051039,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0140013,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue7.8e-13
EggNOG OGsKOG1171@1|root,KOG1171@2759|Eukaryota
DescriptionDNA-binding transcription factor activity
Cds size663
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.3077776-UTR-L-digitata_M_contig102512:161..1771682406630.3077776-UTR-L-digitata_M_contig102512:161..177Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig102512 162..177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.3184133-CDS-L-digitata_M_contig102512:177..8401682406630.3184133-CDS-L-digitata_M_contig102512:177..840Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102512 178..840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102512.1.1prot_L-digitata_M_contig102512.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102512 178..840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102512.1.1

>prot_L-digitata_M_contig102512.1.1 ID=prot_L-digitata_M_contig102512.1.1|Name=mRNA_L-digitata_M_contig102512.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=221bp
ALSNQVQAANGGTAVASAVVHNTGCGCSKSACLKRYCECFNGGIACSDKC
RCKDCKNTVVVGGSGGVVRVGGGGGGVSVGSGGEAVAALLAIAAAASAAA
TVATSTTSTTPNGVSSGASLPIGQCTAPVFAAASSDQAAAAAAAAAAATT
TSRTRKGESVCVAAAGLADGDLQAKVEVGGGTVAAAAACQAPNVVRSPLG
MLPGIVIGDDSCSNRGTTRV*
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mRNA from alignment at L-digitata_M_contig102512:162..840-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102512.1.1 ID=mRNA_L-digitata_M_contig102512.1.1|Name=mRNA_L-digitata_M_contig102512.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=679bp|location=Sequence derived from alignment at L-digitata_M_contig102512:162..840- (Laminaria digitata LdigPH10_18mv male)
GCGTTATCAAACCAGGTGCAGGCGGCGAACGGTGGCACAGCGGTGGCGAG
CGCGGTGGTCCACAACACCGGTTGCGGGTGCAGCAAGTCGGCCTGCCTGA
AGCGGTACTGCGAGTGCTTCAACGGCGGCATCGCGTGCTCCGACAAGTGT
CGCTGCAAGGACTGCAAGAACACGGTTGTGGTCGGCGGCAGCGGCGGGGT
CGTGCGGGTCGGCGGCGGCGGCGGCGGTGTCAGCGTCGGAAGTGGTGGGG
AGGCCGTGGCGGCGTTGCTAGCCATCGCGGCCGCCGCTAGCGCCGCCGCC
ACCGTAGCCACCAGCACCACCAGCACCACCCCTAACGGTGTTAGCAGCGG
CGCCTCCCTTCCGATAGGGCAATGCACGGCGCCTGTCTTTGCTGCTGCCT
CTAGCGATCAGGCTGCGGCTGCTGCGGCTGCGGCAGCGGCGGCGACAACA
ACGAGCAGAACTCGAAAAGGGGAAAGCGTATGCGTTGCCGCGGCGGGCCT
AGCGGACGGAGATTTGCAGGCGAAGGTGGAAGTTGGCGGCGGCACGGTGG
CGGCGGCGGCGGCGTGCCAGGCCCCTAACGTGGTCCGCTCTCCCCTGGGC
ATGCTGCCCGGAATTGTGATCGGTGATGATTCTTGTTCGAACAGGGGCAC
GACAAGAGTGTGAGCGAGCGGTCGGCCGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102512:162..840-

>mRNA_L-digitata_M_contig102512.1.1 ID=mRNA_L-digitata_M_contig102512.1.1|Name=mRNA_L-digitata_M_contig102512.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=663bp|location=Sequence derived from alignment at L-digitata_M_contig102512:162..840- (Laminaria digitata LdigPH10_18mv male)
GCGTTATCAAACCAGGTGCAGGCGGCGAACGGTGGCACAGCGGTGGCGAG
CGCGGTGGTCCACAACACCGGTTGCGGGTGCAGCAAGTCGGCCTGCCTGA
AGCGGTACTGCGAGTGCTTCAACGGCGGCATCGCGTGCTCCGACAAGTGT
CGCTGCAAGGACTGCAAGAACACGGTTGTGGTCGGCGGCAGCGGCGGGGT
CGTGCGGGTCGGCGGCGGCGGCGGCGGTGTCAGCGTCGGAAGTGGTGGGG
AGGCCGTGGCGGCGTTGCTAGCCATCGCGGCCGCCGCTAGCGCCGCCGCC
ACCGTAGCCACCAGCACCACCAGCACCACCCCTAACGGTGTTAGCAGCGG
CGCCTCCCTTCCGATAGGGCAATGCACGGCGCCTGTCTTTGCTGCTGCCT
CTAGCGATCAGGCTGCGGCTGCTGCGGCTGCGGCAGCGGCGGCGACAACA
ACGAGCAGAACTCGAAAAGGGGAAAGCGTATGCGTTGCCGCGGCGGGCCT
AGCGGACGGAGATTTGCAGGCGAAGGTGGAAGTTGGCGGCGGCACGGTGG
CGGCGGCGGCGGCGTGCCAGGCCCCTAACGTGGTCCGCTCTCCCCTGGGC
ATGCTGCCCGGAATTGTGATCGGTGATGATTCTTGTTCGAACAGGGGCAC
GACAAGAGTGTGA
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