mRNA_L-digitata_M_contig102505.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102505.1.1
Unique NamemRNA_L-digitata_M_contig102505.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102505.1.1 vs. uniprot
Match: A0A6H5JMB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.560e-13
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 ALRRACLVRELQLLFLHVMGEARDCLLGPGINVPPPLLKITPILAQ 147
            AL RACLVRELQLLFLHVMGEAR   LGPG+  PPPL +  P+LA+
Sbjct:   42 ALNRACLVRELQLLFLHVMGEARAVSLGPGMVTPPPLAEHAPVLAE 87
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BLAST of mRNA_L-digitata_M_contig102505.1.1 vs. uniprot
Match: D8LJC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC7_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.620e-11
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   10 ALRRACLVRELQLLFLHVMGEARDCLLGPGINVPPPLLKITPILAQ 147
            AL RACLVRELQLLFLHVMGEAR   LGPG+  PPPL + T +LA+
Sbjct:  827 ALNRACLVRELQLLFLHVMGEARAASLGPGMVPPPPLAEHTSVLAE 872
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102505.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMB7_9PHAE8.560e-1371.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJC7_ECTSI2.620e-1171.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102505contigL-digitata_M_contig102505:524..670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.2304838-CDS-L-digitata_M_contig102505:523..6701682406630.2304838-CDS-L-digitata_M_contig102505:523..670Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102505 524..670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102505.1.1prot_L-digitata_M_contig102505.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102505 524..670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102505.1.1

>prot_L-digitata_M_contig102505.1.1 ID=prot_L-digitata_M_contig102505.1.1|Name=mRNA_L-digitata_M_contig102505.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=49bp
RHRALRRACLVRELQLLFLHVMGEARDCLLGPGINVPPPLLKITPILAQ
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mRNA from alignment at L-digitata_M_contig102505:524..670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102505.1.1 ID=mRNA_L-digitata_M_contig102505.1.1|Name=mRNA_L-digitata_M_contig102505.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=147bp|location=Sequence derived from alignment at L-digitata_M_contig102505:524..670+ (Laminaria digitata LdigPH10_18mv male)
CGTCATCGGGCACTGAGGAGGGCTTGTCTAGTGCGCGAGCTGCAGCTTTT
GTTTCTCCACGTCATGGGAGAGGCGCGAGACTGTCTGCTGGGACCGGGGA
TAAACGTCCCCCCTCCCCTCTTGAAGATCACGCCCATTCTTGCTCAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102505:524..670+

>mRNA_L-digitata_M_contig102505.1.1 ID=mRNA_L-digitata_M_contig102505.1.1|Name=mRNA_L-digitata_M_contig102505.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=147bp|location=Sequence derived from alignment at L-digitata_M_contig102505:524..670+ (Laminaria digitata LdigPH10_18mv male)
CGTCATCGGGCACTGAGGAGGGCTTGTCTAGTGCGCGAGCTGCAGCTTTT
GTTTCTCCACGTCATGGGAGAGGCGCGAGACTGTCTGCTGGGACCGGGGA
TAAACGTCCCCCCTCCCCTCTTGAAGATCACGCCCATTCTTGCTCAG
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