mRNA_L-digitata_M_contig10250.4.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10250.4.1
Unique NamemRNA_L-digitata_M_contig10250.4.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10250.4.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.750e-12
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  505 EDMEPPRVARKGPLRPRYELRGVLHHLGPHAFAGHYVTDVR 627
            E  + PRV RKGPLR RYELRG+LHHLG HAFAGHYVTDVR
Sbjct:  187 EQPQAPRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVR 227
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BLAST of mRNA_L-digitata_M_contig10250.4.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.090e-10
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:  523 RVARKGPLRPRYELRGVLHHLGPHAFAGHYVTDVR 627
            RV RKGPLR RYELRG+LHHLG HAFAGHYVTDVR
Sbjct: 1375 RVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVR 1409
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BLAST of mRNA_L-digitata_M_contig10250.4.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.780e-6
Identity = 30/45 (66.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  493 KGAAEDMEPPRVARKGPLRPRYELRGVLHHLGPHAFAGHYVTDVR 627
            KG AE   PPR A   PL+ RY L  VLHHLGPHAFAGHYV  VR
Sbjct: 1266 KGEAEAPRPPRDA---PLKARYRLAAVLHHLGPHAFAGHYVACVR 1307
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10250.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KST6_9PHAE3.750e-1280.49RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7G2P5_ECTSI2.090e-1088.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKZ9_9STRA1.780e-666.67USP domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10250contigL-digitata_M_contig10250:4873..5502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2P5
PFAMsUCH
Model size630
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.43e-11
EggNOG OGs2EX8U@1|root,2SYYR@2759|Eukaryota
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-11_002980.1
DescriptionUbiquitin carboxyl-terminal hydrolase
Cds size630
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.1618726-CDS-L-digitata_M_contig10250:4872..55021682406630.1618726-CDS-L-digitata_M_contig10250:4872..5502Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10250 4873..5502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10250.4.1prot_L-digitata_M_contig10250.4.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10250 4873..5502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10250.4.1

>prot_L-digitata_M_contig10250.4.1 ID=prot_L-digitata_M_contig10250.4.1|Name=mRNA_L-digitata_M_contig10250.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=210bp
ECSACTFHNERDSTVCEICSAFRPPLPPPPPSPPMPPLPFFPPQVPSTAA
ITATTATETVTVTPEGVGGNAGGAGGCGGGDSGGGDAFGDDGGGGGGGRE
IFATNPSVYGSKMGVAPTAAADGDEATRRGKEPRKKAAAAAAAASVAVVT
AGATVTEAAAKGAAKGAAEDMEPPRVARKGPLRPRYELRGVLHHLGPHAF
AGHYVTDVRG
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mRNA from alignment at L-digitata_M_contig10250:4873..5502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10250.4.1 ID=mRNA_L-digitata_M_contig10250.4.1|Name=mRNA_L-digitata_M_contig10250.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=630bp|location=Sequence derived from alignment at L-digitata_M_contig10250:4873..5502+ (Laminaria digitata LdigPH10_18mv male)
GAGTGCTCGGCATGCACGTTTCACAACGAGCGAGACTCGACGGTTTGCGA
GATTTGTTCGGCTTTCAGACCGCCACTGCCGCCACCGCCGCCGTCGCCTC
CGATGCCGCCCCTTCCTTTTTTCCCGCCTCAAGTTCCATCAACGGCCGCG
ATAACGGCGACGACGGCGACGGAAACAGTGACGGTGACACCGGAAGGGGT
CGGCGGTAACGCTGGTGGCGCTGGTGGCTGTGGCGGCGGTGACAGCGGCG
GCGGTGATGCCTTTGGAGACGACGGAGGAGGAGGAGGAGGAGGACGCGAA
ATATTCGCCACTAACCCTAGCGTTTATGGCTCGAAGATGGGAGTAGCGCC
GACGGCAGCAGCAGATGGAGACGAGGCAACAAGGCGCGGGAAAGAGCCTC
GAAAAAAGGCGGCAGCAGCAGCAGCAGCAGCAAGTGTGGCAGTGGTAACG
GCGGGCGCTACGGTAACCGAAGCCGCGGCCAAAGGTGCAGCCAAAGGCGC
AGCCGAAGATATGGAGCCGCCGAGGGTCGCGAGGAAGGGGCCCCTCCGTC
CGCGGTACGAGCTACGCGGAGTTTTGCACCACCTGGGGCCGCACGCCTTC
GCGGGGCACTATGTCACCGACGTACGCGGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10250:4873..5502+

>mRNA_L-digitata_M_contig10250.4.1 ID=mRNA_L-digitata_M_contig10250.4.1|Name=mRNA_L-digitata_M_contig10250.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=630bp|location=Sequence derived from alignment at L-digitata_M_contig10250:4873..5502+ (Laminaria digitata LdigPH10_18mv male)
GAGTGCTCGGCATGCACGTTTCACAACGAGCGAGACTCGACGGTTTGCGA
GATTTGTTCGGCTTTCAGACCGCCACTGCCGCCACCGCCGCCGTCGCCTC
CGATGCCGCCCCTTCCTTTTTTCCCGCCTCAAGTTCCATCAACGGCCGCG
ATAACGGCGACGACGGCGACGGAAACAGTGACGGTGACACCGGAAGGGGT
CGGCGGTAACGCTGGTGGCGCTGGTGGCTGTGGCGGCGGTGACAGCGGCG
GCGGTGATGCCTTTGGAGACGACGGAGGAGGAGGAGGAGGAGGACGCGAA
ATATTCGCCACTAACCCTAGCGTTTATGGCTCGAAGATGGGAGTAGCGCC
GACGGCAGCAGCAGATGGAGACGAGGCAACAAGGCGCGGGAAAGAGCCTC
GAAAAAAGGCGGCAGCAGCAGCAGCAGCAGCAAGTGTGGCAGTGGTAACG
GCGGGCGCTACGGTAACCGAAGCCGCGGCCAAAGGTGCAGCCAAAGGCGC
AGCCGAAGATATGGAGCCGCCGAGGGTCGCGAGGAAGGGGCCCCTCCGTC
CGCGGTACGAGCTACGCGGAGTTTTGCACCACCTGGGGCCGCACGCCTTC
GCGGGGCACTATGTCACCGACGTACGCGGG
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