mRNA_L-digitata_M_contig10250.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10250.1.1
Unique NamemRNA_L-digitata_M_contig10250.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10250.1.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.910e-28
Identity = 86/112 (76.79%), Postives = 92/112 (82.14%), Query Frame = 2 
Query:    2 VTLTCTRCSYRRRRREPYRDFSLHIPDPPXXXXXXXXXXXXXXXXXXXXXXXXXXX--LGALLDGFFGPTELNLRCERCGHGLVRAEHSLAQLPGALVLHIKRFKPVASLVP 331
             TLTCT+CSY RRRRE YRDFSL +P+P   XXXXXXXXXXXXXXXXXXXXX      LG LLD FF P+EL+LRCERCGH  VRAEHSLA+LPGALVLHIKRFKPVAS  P
Sbjct:  753 ATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXDGGVSELGDLLDNFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHIKRFKPVASAPP 864
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BLAST of mRNA_L-digitata_M_contig10250.1.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.160e-27
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 2 
Query:    2 VTLTCTRCSYRRRRREPYRDFSLHIPDPPXXXXXXXXXXXXXXXXXXXXXXXXXXX----LGALLDGFFGPTELNLRCERCGHGLVRAEHSLAQLPGALVLHIKRFKPVAS 322
             TLTCT+CSY RRRRE YRDFSL +P+P   XXXXXXXXXXXXXXXXXXXXXXX      LG LLD FF P+EL+LRCERCGH  VRAEHSLA+LPGALVLH+KRFKP AS
Sbjct:  653 ATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXXXDGGVSGLGDLLDSFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHVKRFKPAAS 763
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BLAST of mRNA_L-digitata_M_contig10250.1.1 vs. uniprot
Match: A0A7S2XDJ7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XDJ7_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 9.140e-6
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  170 LGALLDGFFGPTELNLRCERCGHGLVRAEHSLAQLPGALVLHIKRFKP 313
            L  LLDGFF P+E++ +CE+C +       S   LP  L+LH+KRF+P
Sbjct:   28 LRQLLDGFFAPSEVDYKCEKCSNTKALVSSSFESLPRILILHLKRFRP 75
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BLAST of mRNA_L-digitata_M_contig10250.1.1 vs. uniprot
Match: A0A7S3ZF10_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZF10_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-5
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  170 LGALLDGFFGPTELNLRCERCGHGLVRAEHSLAQLPGALVLHIKRFKP 313
            L  LLDGFF P+E++ +CE+C +       S   LP  LVLH+KRF+P
Sbjct:   26 LRQLLDGFFSPSEVDYKCEKCTNTKALVSSSFESLPKILVLHLKRFRP 73
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10250.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KUE2_9PHAE1.910e-2876.79USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2P5_ECTSI3.160e-2776.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XDJ7_9EUKA9.140e-645.83Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3ZF10_9EUKA1.230e-547.92Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10250contigL-digitata_M_contig10250:139..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size385
Hectar predicted targeting categoryother localisation
Exons2
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.0764823-CDS-L-digitata_M_contig10250:138..3431682406630.0764823-CDS-L-digitata_M_contig10250:138..343Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10250 139..343 +
1682406630.0862653-CDS-L-digitata_M_contig10250:1172..13511682406630.0862653-CDS-L-digitata_M_contig10250:1172..1351Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10250 1173..1351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10250.1.1prot_L-digitata_M_contig10250.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10250 139..1351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10250.1.1

>prot_L-digitata_M_contig10250.1.1 ID=prot_L-digitata_M_contig10250.1.1|Name=mRNA_L-digitata_M_contig10250.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=128bp
GYLDVHAVLIPKAATGTVPRFFAPYSGPTAATAAGAPGKRKRGERGEGSG
GGRCIGARRAAGRLLRAYGAKPSVRAMRPRSRPSGALPRPAAGSAGAAHQ
ALQARGFSRSGDADGDAAVADTIASNC*
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mRNA from alignment at L-digitata_M_contig10250:139..1351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10250.1.1 ID=mRNA_L-digitata_M_contig10250.1.1|Name=mRNA_L-digitata_M_contig10250.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1213bp|location=Sequence derived from alignment at L-digitata_M_contig10250:139..1351+ (Laminaria digitata LdigPH10_18mv male)
GGTTACCTTGACGTGCACGCGGTGCTCATACCGAAGGCGGCGACGGGAAC
CGTACCGCGATTTTTCGCTCCATATTCCGGACCCACCGCCGCCACGGCCG
CCGGCGCCCCCGGGAAGAGGAAAAGAGGAGAAAGAGGAGAGGGAAGCGGG
GGAGGGCGGTGTATCGGGGCTAGGCGCGCTGCTGGACGGCTTCTTCGGGC
CTACGGTGAGGAAGCGCCTGTTGGTGTTAGTAGTGTTGGTGGTGTTGGTG
TTTGCGTTGGTGTTGGTGTTGGTGGTGGTGTTGTTATTGTTGTTGGTGGT
GGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGG
TGTTAGTGTTGGTGGTGGTGTTGGTGCTGCCGCTGCCGCTGTTGCTGTCG
CTTCAGAATATCGCCGTTTCGCGAGTGTGTGTCTGGTGTGCTTGTGTATA
TTGTGTTTATGTGTCTGTTGCGTTGGTGTTGGTGTTGGTGCTGCCGCTGC
CGCTGTTGCTGTTGCTTCAGAATATCGCCGTTTCGCGAATGTGTGTCTGG
TGTGCTTGGGTATATTGTGTTTACGTGTCTGCGTTTCTTTGTGACGACTG
CGTGTATCTGTGTGCCCGTATGTCTCAAACCATTTCACAAACGTTACACT
TGGAGATGATTTCTTAAAAATGTTGCGCTACAAGACCACTTGACCGCTTC
AGAAACAGAGTTGCACTACTTGGTACTCTGACGCTGACGCTAAGGCTAAG
ACCAAGACTAACACTAACGCTAACACCAACGCTAACCCTAACGCTAGTGC
TACTGCTAAACGCTAGCGCTAACGCCAACTCTTGCTCTAACGCTAACTCT
ATCTCTACCTCTTACCCTAGCTCTAGCCGCAGCTCTTACCTCCTAACTCT
AACTGGCACGCTGACGTTACCAAATACGCCCAGCTCTAACTCAACGTTCG
CGTTCGCGTTTGTTTGCATTTGCCGCGCGCTTGTCAAACGTTTCTCAACG
TTCTCTCAATATTTTGCTGCCTCTCGGCCGGCAGGAGCTAAACCTTCGGT
GCGAGCGATGCGGCCACGGTCTCGTCCGAGCGGAGCACTCCCTCGCCCAG
CTGCCGGGAGCGCTGGTGCTGCACATCAAGCGCTTCAAGCCCGTGGCTTC
TCTCGTTCCGGCGACGCCGACGGTGACGCCGCCGTCGCTGACACCATCGC
CAGCAACTGCTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10250:139..1351+

>mRNA_L-digitata_M_contig10250.1.1 ID=mRNA_L-digitata_M_contig10250.1.1|Name=mRNA_L-digitata_M_contig10250.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=384bp|location=Sequence derived from alignment at L-digitata_M_contig10250:139..1351+ (Laminaria digitata LdigPH10_18mv male)
GGTTACCTTGACGTGCACGCGGTGCTCATACCGAAGGCGGCGACGGGAAC
CGTACCGCGATTTTTCGCTCCATATTCCGGACCCACCGCCGCCACGGCCG
CCGGCGCCCCCGGGAAGAGGAAAAGAGGAGAAAGAGGAGAGGGAAGCGGG
GGAGGGCGGTGTATCGGGGCTAGGCGCGCTGCTGGACGGCTTCTTCGGGC
CTACGGAGCTAAACCTTCGGTGCGAGCGATGCGGCCACGGTCTCGTCCGA
GCGGAGCACTCCCTCGCCCAGCTGCCGGGAGCGCTGGTGCTGCACATCAA
GCGCTTCAAGCCCGTGGCTTCTCTCGTTCCGGCGACGCCGACGGTGACGC
CGCCGTCGCTGACACCATCGCCAGCAACTGCTAG
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