mRNA_L-digitata_M_contig10249.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10249.3.1
Unique NamemRNA_L-digitata_M_contig10249.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.700e-16
Identity = 47/125 (37.60%), Postives = 65/125 (52.00%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L+ +SSLIALG +C  VC+GMT R  I AG +R W  +            G+             + +H   HW+V  DCSNAFNT  RTA++A+ A  +P L  ++ + Y E P  A  +
Sbjct:   62 EFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYT 185
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.600e-16
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L+ QSSLIALG +C  VC+GMT R  I AG +R W  +            G+             + +H   HW+V  DCSNAFNT  RTA++A+ A  +P L  ++ + Y E P  A  +
Sbjct:  152 EFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYT 275
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.620e-16
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L+ QSSLIALG +C  VC+GMT R  I AG +R W  +            G+             + +H   HW+V  DCSNAFNT  RTA++A+ A  +P L  ++ + Y E P  A  +
Sbjct:   61 EFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYT 184
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.810e-16
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L+ QSSLIALG +C  VC+GMT R  I AG +R W  +            G+             + +H   HW+V  DCSNAFNT  RTA++A+ A  +P L  ++ + Y E P  A  +
Sbjct:  451 EFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYT 574
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.970e-16
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L+ QSSLIALG +C  VC+GMT R  I AG +R W  +            G+             + +H   HW+V  DCSNAFNT  RTA++A+ A  +P L  ++ + Y E P  A  +
Sbjct:  430 EFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYA 553
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.760e-16
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L+ QSSLIALG +C  VC+GMT R  I AG +R W  +            G+             + +H   HW+V  DCSNAFNT  RTA++A+ A  +P L  ++ + Y E P  A  +
Sbjct:  380 EFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYT 503
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.630e-15
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L  QSSLIALG +C  VC+GMT R  I AG +R W  +            G+             + +H   HW+V  DCSNAFNT  RTA++A+ +  +P L  ++ + Y E P  A  +
Sbjct:  429 EFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYT 552
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.420e-15
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = -2 
Query:   93 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDA 413
            EFW L+ QSSLIALG +C  VC+GMT R  I AG +R W  +         +  G+             + +H   +W++  DCSNAFNT  RTA++A+ A  +P L  ++ + Y E P  A
Sbjct:  600 EFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPK-LEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATA 720
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.150e-15
Identity = 48/125 (38.40%), Postives = 63/125 (50.40%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGIRA-------------LHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L+ QSSLIALG +C  VC+GMT R  I AG +R W  +            G+ A             +H   HW+V  DCSNAFN   RTA +A+ A  +P L  ++ + Y E P  A  +
Sbjct:  438 EFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAAAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNMGKRTATMAQAAKSVPDLVGYIARCYDEIPAKAIYT 561
[Close]
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.150e-15
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = -2 
Query:   84 EFWKLFLQSSLIALGGRC--VCVGMT*RWPILAGAMR*WSLRGWRRSTARCSSLGI-------------RALHGASHWLVVADCSNAFNTVSRTAVLAEVATCMPALAPFVTKFYSERPVDAFLS 413
            EFW L+  SSLIALG +C  VC+GMT R  I AG +R W  +            G+             + +H   HW+V  DCSNAFNT  RTA++A+ A  +P L  ++ + Y E P  A  +
Sbjct:  437 EFWTLWKLSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPK-LEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYA 560
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10249.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE2.700e-1637.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE3.600e-1638.40Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LL14_9PHAE4.620e-1638.40Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE4.810e-1638.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE4.970e-1638.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KAK8_9PHAE8.760e-1638.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKQ2_9PHAE1.630e-1537.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE2.420e-1537.70Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K195_9PHAE3.150e-1538.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA96_9PHAE4.150e-1537.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10249contigL-digitata_M_contig10249:2734..3201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size470
Hectar predicted targeting categorysignal peptide
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.0298061-UTR-L-digitata_M_contig10249:2733..28801682406630.0298061-UTR-L-digitata_M_contig10249:2733..2880Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10249 2734..2880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406630.0461695-CDS-L-digitata_M_contig10249:2880..32011682406630.0461695-CDS-L-digitata_M_contig10249:2880..3201Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10249 2881..3201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10249.3.1prot_L-digitata_M_contig10249.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10249 2881..3201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10249.3.1

>prot_L-digitata_M_contig10249.3.1 ID=prot_L-digitata_M_contig10249.3.1|Name=mRNA_L-digitata_M_contig10249.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=107bp
MQVATSASTAVLLTVLNALEQSATTSQWLAPCSARIPKLLHLAVDLLQPR
RDHYRIAPARMGHLHVMPTQTHLPPSAMRLDCKKSFQNSAAGTRQDFADD
FPPKDCH
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mRNA from alignment at L-digitata_M_contig10249:2734..3201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10249.3.1 ID=mRNA_L-digitata_M_contig10249.3.1|Name=mRNA_L-digitata_M_contig10249.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=468bp|location=Sequence derived from alignment at L-digitata_M_contig10249:2734..3201+ (Laminaria digitata LdigPH10_18mv male)
CCGAAACGACAAGGAGAACATCGCCGGTCCCATATGGCCCCCTTGCTCCC
TCCGCGACCGTCCGGTGTTCCCCCGAGTCCATCCGAGAGAAAGGCATCTA
CTGGTCTCTCGCTGTAGAACTTGGTGACAAACGGTGCGAGCGCTGGCATG
CAAGTGGCCACTTCAGCAAGCACAGCCGTCCTGCTGACCGTGTTGAACGC
GTTGGAGCAGTCTGCGACAACGAGCCAGTGGCTAGCGCCGTGTAGCGCGC
GTATCCCCAAACTACTGCATCTCGCGGTTGACCTCCTCCAGCCGCGCAGA
GACCACTATCGCATTGCCCCTGCGAGAATGGGCCACCTTCATGTCATGCC
GACGCAGACACACCTTCCCCCCAGCGCGATGAGGCTAGACTGCAAGAAGA
GCTTCCAAAACTCCGCGGCCGGAACCCGTCAGGATTTCGCCGACGATTTT
CCACCAAAAGACTGTCAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig10249:2734..3201+

>mRNA_L-digitata_M_contig10249.3.1 ID=mRNA_L-digitata_M_contig10249.3.1|Name=mRNA_L-digitata_M_contig10249.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=321bp|location=Sequence derived from alignment at L-digitata_M_contig10249:2734..3201+ (Laminaria digitata LdigPH10_18mv male)
ATGCAAGTGGCCACTTCAGCAAGCACAGCCGTCCTGCTGACCGTGTTGAA
CGCGTTGGAGCAGTCTGCGACAACGAGCCAGTGGCTAGCGCCGTGTAGCG
CGCGTATCCCCAAACTACTGCATCTCGCGGTTGACCTCCTCCAGCCGCGC
AGAGACCACTATCGCATTGCCCCTGCGAGAATGGGCCACCTTCATGTCAT
GCCGACGCAGACACACCTTCCCCCCAGCGCGATGAGGCTAGACTGCAAGA
AGAGCTTCCAAAACTCCGCGGCCGGAACCCGTCAGGATTTCGCCGACGAT
TTTCCACCAAAAGACTGTCAT
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