mRNA_L-digitata_M_contig102482.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102482.3.1
Unique NamemRNA_L-digitata_M_contig102482.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A2E7I599_9PROT (Oxidoreductase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I599_9PROT)

HSP 1 Score: 150 bits (379), Expect = 1.180e-42
Identity = 72/91 (79.12%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNIN 273
            GG+VA+CGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENR  IW+RIA+DLPL+KLDA+TN+ +L DVP++A AILKG+VRGRTV+++N
Sbjct:  242 GGSVASCGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRRHIWRRIAEDLPLDKLDAMTNLATLADVPELAKAILKGEVRGRTVIDVN 332
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BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A2E8XSX5_9PROT (Oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XSX5_9PROT)

HSP 1 Score: 141 bits (355), Expect = 4.420e-39
Identity = 70/92 (76.09%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNINA 276
            GG+VAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQP E+R RIWQRIA+DLPL+KL+A+TNV SL +   +A AIL G VRGR V+++NA
Sbjct:  241 GGSVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPKEHRLRIWQRIAEDLPLDKLNAMTNVSSLGEAEALAKAILNGDVRGRAVIDVNA 332
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BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A848W9K7_9PROT (Oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W9K7_9PROT)

HSP 1 Score: 140 bits (354), Expect = 6.220e-39
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNIN 273
            G  VAACGLAGGN L TT+LPF+LRGVN+LGIDSVMQPAENR RIWQRI DDLPL KLDA+T+V  L DVP +A+ ILKGQVRGRTV+++N
Sbjct:  241 GAPVAACGLAGGNGLNTTILPFILRGVNLLGIDSVMQPAENRQRIWQRIVDDLPLAKLDAMTSVRPLADVPQLATEILKGQVRGRTVIDVN 331
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BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A2E7PH62_9PROT (Oxidoreductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PH62_9PROT)

HSP 1 Score: 140 bits (352), Expect = 1.260e-38
Identity = 70/92 (76.09%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNINA 276
            GG+VAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQ   +R RIWQRI +DLPL+KLDA+T+   L DVPD+A AILKG +RGRTV+++NA
Sbjct:  242 GGSVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQHKVHRIRIWQRIVEDLPLDKLDAMTSKAPLADVPDLAKAILKGGLRGRTVIDVNA 333
[Close]
BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A2S6U3T5_9PROT (Acrylyl-CoA reductase AcuI (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin1 TaxID=2013074 RepID=A0A2S6U3T5_9PROT)

HSP 1 Score: 129 bits (324), Expect = 7.210e-36
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNINA 276
            G +VAACGLAGG  LETTVLPFLLRGVN+LGIDSVMQ  +NR RIW+R+  DLP E+LDALT  I+L+D+P  A  ILKGQVRGR VVN++A
Sbjct:  107 GASVAACGLAGGANLETTVLPFLLRGVNLLGIDSVMQRHDNRLRIWRRLVKDLPFEQLDALTEEIALSDIPRAAGDILKGQVRGRLVVNLDA 198
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BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A2E6QBI0_9PROT (Oxidoreductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QBI0_9PROT)

HSP 1 Score: 131 bits (329), Expect = 3.260e-35
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNINA 276
            GG+VAACGLAGG  LETTV+PFLLRGVN+LGIDSV+QP +NR   WQRIA DLPLEKLD LT   +L  VPD A AILKG +RGR VV++NA
Sbjct:  241 GGSVAACGLAGGPKLETTVIPFLLRGVNLLGIDSVVQPYDNRVAAWQRIAKDLPLEKLDELTETTALAGVPDAAGAILKGGIRGRLVVDLNA 332
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BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A2E7RCY3_9PROT (Oxidoreductase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7RCY3_9PROT)

HSP 1 Score: 129 bits (325), Expect = 1.280e-34
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNIN 273
            G +VA CGLAGG  L+TTV+PFLLRG+N+LGIDSV+QP +NR   WQRIA+DLPLEKLDALT  + +  VPD ASAI+KG++RGR VV++N
Sbjct:  241 GSSVATCGLAGGADLQTTVIPFLLRGINLLGIDSVVQPFDNRLATWQRIAEDLPLEKLDALTETVGIAAVPDAASAIIKGEIRGRLVVDVN 331
[Close]
BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A7W5DYC2_9BACT (Acrylyl-CoA reductase (NADPH) n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5DYC2_9BACT)

HSP 1 Score: 125 bits (313), Expect = 7.370e-33
Identity = 62/92 (67.39%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNINA 276
            GG+VAA GLAGG++L TTV+PFLLRGVN+LGIDSVMQP ENR R W RIA DLPLEKL A+ +  +L DVP++AS IL+G+++GR VV++NA
Sbjct:  239 GGSVAAVGLAGGSSLPTTVIPFLLRGVNLLGIDSVMQPYENRVRAWDRIATDLPLEKLGAMIHRATLADVPELASDILEGKIKGRIVVDVNA 330
[Close]
BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A2D7F9P6_9HYPH (Oxidoreductase n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7F9P6_9HYPH)

HSP 1 Score: 125 bits (313), Expect = 7.510e-33
Identity = 61/92 (66.30%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNINA 276
            G +VAA GLAGGN L+TTV+PFLLRGVN+LGIDSVMQP ENR   WQRIA DLP++KLDA+    +L+D+P +   ILKGQV+GR VV++NA
Sbjct:  240 GASVAAVGLAGGNKLDTTVIPFLLRGVNLLGIDSVMQPYENRNSAWQRIASDLPMDKLDAMIQSATLSDLPGLGRDILKGQVKGRVVVDVNA 331
[Close]
BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Match: A0A0F9HAT5_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9HAT5_9ZZZZ)

HSP 1 Score: 119 bits (297), Expect = 8.280e-33
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIADDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNINA 276
            G +VAA GLAGG  L  TV+PFLLRGVN+LGIDSV+QP +NR R W+R+A DLP+EKL+A+    SL+D+P + + ILKGQV+GR VV++NA
Sbjct:   24 GASVAAVGLAGGAALPATVIPFLLRGVNLLGIDSVLQPYDNRLRAWERVAKDLPMEKLEAMVQPASLSDLPKLGADILKGQVKGRVVVDVNA 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102482.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7I599_9PROT1.180e-4279.12Oxidoreductase n=2 Tax=Alphaproteobacteria TaxID=2... [more]
A0A2E8XSX5_9PROT4.420e-3976.09Oxidoreductase n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A848W9K7_9PROT6.220e-3975.82Oxidoreductase n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A2E7PH62_9PROT1.260e-3876.09Oxidoreductase n=1 Tax=Rhodospirillaceae bacterium... [more]
A0A2S6U3T5_9PROT7.210e-3670.65Acrylyl-CoA reductase AcuI (Fragment) n=1 Tax=Alph... [more]
A0A2E6QBI0_9PROT3.260e-3571.74Oxidoreductase n=1 Tax=Rhodospirillaceae bacterium... [more]
A0A2E7RCY3_9PROT1.280e-3467.03Oxidoreductase n=2 Tax=Rhodospirillaceae bacterium... [more]
A0A7W5DYC2_9BACT7.370e-3367.39Acrylyl-CoA reductase (NADPH) n=2 Tax=Rhodopirellu... [more]
A0A2D7F9P6_9HYPH7.510e-3366.30Oxidoreductase n=2 Tax=Hyphomicrobiaceae TaxID=454... [more]
A0A0F9HAT5_9ZZZZ8.280e-3361.96Uncharacterized protein n=1 Tax=marine sediment me... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102482contigL-digitata_M_contig102482:634..912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog595460.RRSWK_00468
PFAMsADH_N,ADH_zinc_N
Model size279
Max annot lvl203682|Planctomycetes
KEGG rclassRC00095
KEGG koko:K19745
KEGG ReactionR00919
KEGG Pathwayko00640,ko01100,map00640,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.11e-34
EggNOG OGsCOG0604@1|root,COG0604@2|Bacteria,2IYUZ@203682|Planctomycetes
DescriptionZinc-binding dehydrogenase
Cds size279
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406629.9441972-CDS-L-digitata_M_contig102482:633..9121682406629.9441972-CDS-L-digitata_M_contig102482:633..912Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102482 634..912 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102482.3.1prot_L-digitata_M_contig102482.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102482 634..912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102482.3.1

>prot_L-digitata_M_contig102482.3.1 ID=prot_L-digitata_M_contig102482.3.1|Name=mRNA_L-digitata_M_contig102482.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=93bp
GGAVAACGLAGGNTLETTVLPFLLRGVNILGIDSVMQPAENRTRIWQRIA
DDLPLEKLDALTNVISLNDVPDVASAILKGQVRGRTVVNINA*
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mRNA from alignment at L-digitata_M_contig102482:634..912-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102482.3.1 ID=mRNA_L-digitata_M_contig102482.3.1|Name=mRNA_L-digitata_M_contig102482.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=279bp|location=Sequence derived from alignment at L-digitata_M_contig102482:634..912- (Laminaria digitata LdigPH10_18mv male)
GGCGGCGCGGTTGCGGCCTGCGGTCTGGCCGGAGGCAATACTCTTGAAAC
CACCGTGCTGCCGTTCCTCTTGCGGGGTGTGAATATTCTCGGGATCGATT
CTGTCATGCAGCCCGCTGAAAACCGTACGCGCATCTGGCAGCGTATTGCC
GATGATTTGCCGTTGGAGAAGCTTGATGCGCTCACCAATGTCATATCTCT
CAATGATGTCCCGGATGTGGCCAGTGCCATCCTGAAAGGTCAGGTTCGTG
GTCGAACAGTGGTGAATATCAACGCCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig102482:634..912-

>mRNA_L-digitata_M_contig102482.3.1 ID=mRNA_L-digitata_M_contig102482.3.1|Name=mRNA_L-digitata_M_contig102482.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=279bp|location=Sequence derived from alignment at L-digitata_M_contig102482:634..912- (Laminaria digitata LdigPH10_18mv male)
GGCGGCGCGGTTGCGGCCTGCGGTCTGGCCGGAGGCAATACTCTTGAAAC
CACCGTGCTGCCGTTCCTCTTGCGGGGTGTGAATATTCTCGGGATCGATT
CTGTCATGCAGCCCGCTGAAAACCGTACGCGCATCTGGCAGCGTATTGCC
GATGATTTGCCGTTGGAGAAGCTTGATGCGCTCACCAATGTCATATCTCT
CAATGATGTCCCGGATGTGGCCAGTGCCATCCTGAAAGGTCAGGTTCGTG
GTCGAACAGTGGTGAATATCAACGCCTGA
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