mRNA_L-digitata_M_contig102482.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102482.2.1
Unique NamemRNA_L-digitata_M_contig102482.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102482.2.1 vs. uniprot
Match: K2KBU1_9PROT (Uncharacterized protein n=2 Tax=Oceanibaculum indicum TaxID=526216 RepID=K2KBU1_9PROT)

HSP 1 Score: 47.0 bits (110), Expect = 5.560e-5
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:  115 PVTPLYCYETIGTADCHAKPVL-GEGGRLQGYEGPKPKLRT 234
            P TP+YCY+T+G A+C+  P+   E GRL GY G  P+  T
Sbjct:   38 PDTPVYCYQTLGRAECYPAPLPPSEAGRLIGYYGAPPRALT 78
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BLAST of mRNA_L-digitata_M_contig102482.2.1 vs. uniprot
Match: A0A7D5S019_9PROT (Uncharacterized protein n=1 Tax=Defluviicoccus sp. TaxID=2682137 RepID=A0A7D5S019_9PROT)

HSP 1 Score: 47.8 bits (112), Expect = 7.850e-5
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 1 
Query:  124 PLYCYETIGTADCHAKPVLGEGGRLQGYEGPKP 222
            P+YCY+TIGT DCH  P   +  RL  Y GP P
Sbjct:   36 PIYCYQTIGTVDCHRHPDARDADRLVNYYGPAP 68
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102482.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
K2KBU1_9PROT5.560e-548.78Uncharacterized protein n=2 Tax=Oceanibaculum indi... [more]
A0A7D5S019_9PROT7.850e-554.55Uncharacterized protein n=1 Tax=Defluviicoccus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102482contigL-digitata_M_contig102482:287..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog91604.ID47_04370
Model size243
Max annot lvl766|Rickettsiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.48e-08
EggNOG OGs2AEQR@1|root,314MA@2|Bacteria,1PUBJ@1224|Proteobacteria,2V620@28211|Alphaproteobacteria,47GHR@766|Rickettsiales
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406629.8929653-CDS-L-digitata_M_contig102482:286..5291682406629.8929653-CDS-L-digitata_M_contig102482:286..529Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102482 287..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102482.2.1prot_L-digitata_M_contig102482.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102482 287..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102482.2.1

>prot_L-digitata_M_contig102482.2.1 ID=prot_L-digitata_M_contig102482.2.1|Name=mRNA_L-digitata_M_contig102482.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=81bp
MLVAAAMLLSACDNPFSDDAPSFNDILSAGWLDDDEPVPVTPLYCYETIG
TADCHAKPVLGEGGRLQGYEGPKPKLRTDN*
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mRNA from alignment at L-digitata_M_contig102482:287..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102482.2.1 ID=mRNA_L-digitata_M_contig102482.2.1|Name=mRNA_L-digitata_M_contig102482.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=243bp|location=Sequence derived from alignment at L-digitata_M_contig102482:287..529- (Laminaria digitata LdigPH10_18mv male)
ATGCTGGTGGCAGCGGCAATGCTTTTGTCGGCCTGCGACAATCCGTTTTC
CGATGATGCCCCGTCCTTCAACGATATTCTCTCCGCCGGTTGGCTTGATG
ACGACGAGCCCGTGCCGGTCACGCCGCTCTATTGCTATGAGACAATCGGT
ACTGCGGATTGCCATGCCAAACCTGTTTTGGGTGAGGGTGGTCGTTTGCA
GGGCTATGAAGGCCCGAAGCCCAAACTGCGCACCGATAACTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102482:287..529-

>mRNA_L-digitata_M_contig102482.2.1 ID=mRNA_L-digitata_M_contig102482.2.1|Name=mRNA_L-digitata_M_contig102482.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=243bp|location=Sequence derived from alignment at L-digitata_M_contig102482:287..529- (Laminaria digitata LdigPH10_18mv male)
ATGCTGGTGGCAGCGGCAATGCTTTTGTCGGCCTGCGACAATCCGTTTTC
CGATGATGCCCCGTCCTTCAACGATATTCTCTCCGCCGGTTGGCTTGATG
ACGACGAGCCCGTGCCGGTCACGCCGCTCTATTGCTATGAGACAATCGGT
ACTGCGGATTGCCATGCCAAACCTGTTTTGGGTGAGGGTGGTCGTTTGCA
GGGCTATGAAGGCCCGAAGCCCAAACTGCGCACCGATAACTAG
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