mRNA_L-digitata_M_contig102347.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: A0A1D2SSG8_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. SCN 65-20 TaxID=1660109 RepID=A0A1D2SSG8_9HYPH) HSP 1 Score: 52.8 bits (125), Expect = 1.080e-6 Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
++ GN F + + D DAF NG + +NA +GD LV +VL+ QVD DVR + RR
Sbjct: 95 YLYGNPQIDFTKQEKLDLDAFRNGIRDSINARVGDKLVHEVLVEQVDFLTPDDVRDNAVRRR 156
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: A0A432V5U1_9HYPH (Uncharacterized protein n=1 Tax=Pseudaminobacter arsenicus TaxID=1851146 RepID=A0A432V5U1_9HYPH) HSP 1 Score: 51.2 bits (121), Expect = 4.200e-6 Identity = 21/62 (33.87%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
++ N F +NFD DAF NG + VN +G+DL+++V++ Q+D + +++R + RR
Sbjct: 95 YLYANKQIDFAERQNFDLDAFRNGIRDSVNKRVGEDLIREVIVEQIDFLSKAELRDDTVRRR 156
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00156EE91A (hypothetical protein n=1 Tax=Chelativorans sp. Marseille-P2723 TaxID=2709133 RepID=UPI00156EE91A) HSP 1 Score: 50.4 bits (119), Expect = 7.220e-6 Identity = 21/62 (33.87%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
++ GN F ++ D DA NG + +N LG+ LV +VL+ Q+D+ + +D+R + RR
Sbjct: 95 YLYGNPQIDFSELERIDLDALRNGIRDSINERLGEKLVHEVLVEQIDYLSKADIRDNAIRRR 156
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: A0A2S0XI47_9HYPH (Uncharacterized protein n=4 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A2S0XI47_9HYPH) HSP 1 Score: 50.4 bits (119), Expect = 9.460e-6 Identity = 22/63 (34.92%), Postives = 35/63 (55.56%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARRA 189
++ GN F + D DAF NG + +NA +G+ LV +V++ Q+D DVR + RR+
Sbjct: 98 YLYGNPQIDFTQYDKLDLDAFRNGLRDSINARIGEKLVHEVMVEQIDFLTPDDVRDNAVRRRS 160
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00145D5038 (hypothetical protein n=1 Tax=Chelativorans sp. ZYF759 TaxID=2692213 RepID=UPI00145D5038) HSP 1 Score: 49.7 bits (117), Expect = 1.420e-5 Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVR 165
++ GN F + FD DAF NG K +N +G+DLV+++L+ Q+D +D+R
Sbjct: 95 YLFGNELIDFSGKETFDLDAFRNGIKDSINRRVGEDLVREILVEQMDFLTKADIR 149
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00058D39BB (hypothetical protein n=1 Tax=Hoeflea sp. 108 TaxID=1116369 RepID=UPI00058D39BB) HSP 1 Score: 49.7 bits (117), Expect = 1.840e-5 Identity = 21/63 (33.33%), Postives = 35/63 (55.56%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARRA 189
++ GN F + D DAF NG + +N +GD +V++VL+ Q+D DVR + +R+
Sbjct: 95 YLYGNPQIDFTQYDKIDLDAFRNGIRDSINQRIGDKMVQEVLVEQIDFLTPDDVRDNAVRKRS 157
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: Q11LQ4_CHESB (Uncharacterized protein n=1 Tax=Chelativorans sp. (strain BNC1) TaxID=266779 RepID=Q11LQ4_CHESB) HSP 1 Score: 49.3 bits (116), Expect = 1.980e-5 Identity = 21/62 (33.87%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
++ GN F ++ D DA NG + +NA +G+ L+ +VL+ QVD+ + +D+R + RR
Sbjct: 95 YLYGNPQIDFSAKESVDLDALRNGIRDSINARVGEQLIHEVLVEQVDYLSKADIRDNAIRRR 156
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00047F6739 (hypothetical protein n=1 Tax=Chelativorans sp. J32 TaxID=935840 RepID=UPI00047F6739) HSP 1 Score: 49.3 bits (116), Expect = 1.980e-5 Identity = 22/62 (35.48%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
++ GN F ++ D DA NG + +N LG+ LV +VL+ QVD+ + +D+R + RR
Sbjct: 95 YLYGNPQIDFSNRQSVDLDALRNGIRDSINTRLGETLVHEVLVEQVDYLSKADIRDNAIRRR 156
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: A0A3F2UC58_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. YM1C-6-2 TaxID=1827501 RepID=A0A3F2UC58_9HYPH) HSP 1 Score: 49.3 bits (116), Expect = 2.430e-5 Identity = 21/64 (32.81%), Postives = 37/64 (57.81%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARRAQ 192
++ GN + F + D DAF +G + +N +G+DL+ +VL+ QVD + ++R + RR Q
Sbjct: 95 YIYGNPELDFASHETLDLDAFRDGIRKKINEKIGEDLIHEVLVEQVDFLSKEEIRDNTIRRRMQ 158
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00165CF93F (hypothetical protein n=1 Tax=Aquibium microcysteis TaxID=675281 RepID=UPI00165CF93F) HSP 1 Score: 47.8 bits (112), Expect = 9.310e-5 Identity = 20/64 (31.25%), Postives = 35/64 (54.69%), Query Frame = 1
Query: 1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARRAQ 192
++ N F R++ D DA NG K +N +G++L+ +V+I Q+D+ +R + RR Q
Sbjct: 95 YLFSNPSIDFSRVQGVDLDALRNGLKDSINKRVGNELIHEVMIEQIDYLTKEQIRDNALKRRDQ 158 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig102347.1.1 >prot_L-digitata_M_contig102347.1.1 ID=prot_L-digitata_M_contig102347.1.1|Name=mRNA_L-digitata_M_contig102347.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp MSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASback to top mRNA from alignment at L-digitata_M_contig102347:2..217+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig102347.1.1 ID=mRNA_L-digitata_M_contig102347.1.1|Name=mRNA_L-digitata_M_contig102347.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=216bp|location=Sequence derived from alignment at L-digitata_M_contig102347:2..217+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig102347:2..217+ >mRNA_L-digitata_M_contig102347.1.1 ID=mRNA_L-digitata_M_contig102347.1.1|Name=mRNA_L-digitata_M_contig102347.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig102347:2..217+ (Laminaria digitata LdigPH10_18mv male)back to top |