mRNA_L-digitata_M_contig102347.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102347.1.1
Unique NamemRNA_L-digitata_M_contig102347.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: A0A1D2SSG8_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. SCN 65-20 TaxID=1660109 RepID=A0A1D2SSG8_9HYPH)

HSP 1 Score: 52.8 bits (125), Expect = 1.080e-6
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
            ++ GN    F + +  D DAF NG +  +NA +GD LV +VL+ QVD     DVR  +  RR
Sbjct:   95 YLYGNPQIDFTKQEKLDLDAFRNGIRDSINARVGDKLVHEVLVEQVDFLTPDDVRDNAVRRR 156          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: A0A432V5U1_9HYPH (Uncharacterized protein n=1 Tax=Pseudaminobacter arsenicus TaxID=1851146 RepID=A0A432V5U1_9HYPH)

HSP 1 Score: 51.2 bits (121), Expect = 4.200e-6
Identity = 21/62 (33.87%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
            ++  N    F   +NFD DAF NG +  VN  +G+DL+++V++ Q+D  + +++R  +  RR
Sbjct:   95 YLYANKQIDFAERQNFDLDAFRNGIRDSVNKRVGEDLIREVIVEQIDFLSKAELRDDTVRRR 156          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00156EE91A (hypothetical protein n=1 Tax=Chelativorans sp. Marseille-P2723 TaxID=2709133 RepID=UPI00156EE91A)

HSP 1 Score: 50.4 bits (119), Expect = 7.220e-6
Identity = 21/62 (33.87%), Postives = 36/62 (58.06%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
            ++ GN    F  ++  D DA  NG +  +N  LG+ LV +VL+ Q+D+ + +D+R  +  RR
Sbjct:   95 YLYGNPQIDFSELERIDLDALRNGIRDSINERLGEKLVHEVLVEQIDYLSKADIRDNAIRRR 156          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: A0A2S0XI47_9HYPH (Uncharacterized protein n=4 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A2S0XI47_9HYPH)

HSP 1 Score: 50.4 bits (119), Expect = 9.460e-6
Identity = 22/63 (34.92%), Postives = 35/63 (55.56%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARRA 189
            ++ GN    F +    D DAF NG +  +NA +G+ LV +V++ Q+D     DVR  +  RR+
Sbjct:   98 YLYGNPQIDFTQYDKLDLDAFRNGLRDSINARIGEKLVHEVMVEQIDFLTPDDVRDNAVRRRS 160          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00145D5038 (hypothetical protein n=1 Tax=Chelativorans sp. ZYF759 TaxID=2692213 RepID=UPI00145D5038)

HSP 1 Score: 49.7 bits (117), Expect = 1.420e-5
Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVR 165
            ++ GN    F   + FD DAF NG K  +N  +G+DLV+++L+ Q+D    +D+R
Sbjct:   95 YLFGNELIDFSGKETFDLDAFRNGIKDSINRRVGEDLVREILVEQMDFLTKADIR 149          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00058D39BB (hypothetical protein n=1 Tax=Hoeflea sp. 108 TaxID=1116369 RepID=UPI00058D39BB)

HSP 1 Score: 49.7 bits (117), Expect = 1.840e-5
Identity = 21/63 (33.33%), Postives = 35/63 (55.56%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARRA 189
            ++ GN    F +    D DAF NG +  +N  +GD +V++VL+ Q+D     DVR  +  +R+
Sbjct:   95 YLYGNPQIDFTQYDKIDLDAFRNGIRDSINQRIGDKMVQEVLVEQIDFLTPDDVRDNAVRKRS 157          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: Q11LQ4_CHESB (Uncharacterized protein n=1 Tax=Chelativorans sp. (strain BNC1) TaxID=266779 RepID=Q11LQ4_CHESB)

HSP 1 Score: 49.3 bits (116), Expect = 1.980e-5
Identity = 21/62 (33.87%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
            ++ GN    F   ++ D DA  NG +  +NA +G+ L+ +VL+ QVD+ + +D+R  +  RR
Sbjct:   95 YLYGNPQIDFSAKESVDLDALRNGIRDSINARVGEQLIHEVLVEQVDYLSKADIRDNAIRRR 156          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00047F6739 (hypothetical protein n=1 Tax=Chelativorans sp. J32 TaxID=935840 RepID=UPI00047F6739)

HSP 1 Score: 49.3 bits (116), Expect = 1.980e-5
Identity = 22/62 (35.48%), Postives = 36/62 (58.06%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARR 186
            ++ GN    F   ++ D DA  NG +  +N  LG+ LV +VL+ QVD+ + +D+R  +  RR
Sbjct:   95 YLYGNPQIDFSNRQSVDLDALRNGIRDSINTRLGETLVHEVLVEQVDYLSKADIRDNAIRRR 156          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: A0A3F2UC58_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. YM1C-6-2 TaxID=1827501 RepID=A0A3F2UC58_9HYPH)

HSP 1 Score: 49.3 bits (116), Expect = 2.430e-5
Identity = 21/64 (32.81%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARRAQ 192
            ++ GN +  F   +  D DAF +G +  +N  +G+DL+ +VL+ QVD  +  ++R  +  RR Q
Sbjct:   95 YIYGNPELDFASHETLDLDAFRDGIRKKINEKIGEDLIHEVLVEQVDFLSKEEIRDNTIRRRMQ 158          
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Match: UPI00165CF93F (hypothetical protein n=1 Tax=Aquibium microcysteis TaxID=675281 RepID=UPI00165CF93F)

HSP 1 Score: 47.8 bits (112), Expect = 9.310e-5
Identity = 20/64 (31.25%), Postives = 35/64 (54.69%), Query Frame = 1
Query:    1 FMSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFASSDVRARSAARRAQ 192
            ++  N    F R++  D DA  NG K  +N  +G++L+ +V+I Q+D+     +R  +  RR Q
Sbjct:   95 YLFSNPSIDFSRVQGVDLDALRNGLKDSINKRVGNELIHEVMIEQIDYLTKEQIRDNALKRRDQ 158          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1D2SSG8_9HYPH1.080e-640.32Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
A0A432V5U1_9HYPH4.200e-633.87Uncharacterized protein n=1 Tax=Pseudaminobacter a... [more]
UPI00156EE91A7.220e-633.87hypothetical protein n=1 Tax=Chelativorans sp. Mar... [more]
A0A2S0XI47_9HYPH9.460e-634.92Uncharacterized protein n=4 Tax=Phyllobacteriaceae... [more]
UPI00145D50381.420e-538.18hypothetical protein n=1 Tax=Chelativorans sp. ZYF... [more]
UPI00058D39BB1.840e-533.33hypothetical protein n=1 Tax=Hoeflea sp. 108 TaxID... [more]
Q11LQ4_CHESB1.980e-533.87Uncharacterized protein n=1 Tax=Chelativorans sp. ... [more]
UPI00047F67391.980e-535.48hypothetical protein n=1 Tax=Chelativorans sp. J32... [more]
A0A3F2UC58_9HYPH2.430e-532.81Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
UPI00165CF93F9.310e-531.25hypothetical protein n=1 Tax=Aquibium microcysteis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102347contigL-digitata_M_contig102347:2..217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1116369.KB890024_gene3551
Model size216
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.83e-06
EggNOG OGs2D2MA@1|root,32TD2@2|Bacteria,1N2AM@1224|Proteobacteria,2UB9D@28211|Alphaproteobacteria,43QVI@69277|Phyllobacteriaceae
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.3671072-UTR-L-digitata_M_contig102347:1..41682406628.3671072-UTR-L-digitata_M_contig102347:1..4Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig102347 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.3748455-CDS-L-digitata_M_contig102347:4..2171682406628.3748455-CDS-L-digitata_M_contig102347:4..217Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102347 5..217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102347.1.1prot_L-digitata_M_contig102347.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102347 5..217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102347.1.1

>prot_L-digitata_M_contig102347.1.1 ID=prot_L-digitata_M_contig102347.1.1|Name=mRNA_L-digitata_M_contig102347.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
MSGNTDFAFPRIKNFDYDAFTNGFKTHVNASLGDDLVKDVLIGQVDHFAS
SDVRARSAARRAQLRDEGDQ*
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mRNA from alignment at L-digitata_M_contig102347:2..217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102347.1.1 ID=mRNA_L-digitata_M_contig102347.1.1|Name=mRNA_L-digitata_M_contig102347.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=216bp|location=Sequence derived from alignment at L-digitata_M_contig102347:2..217+ (Laminaria digitata LdigPH10_18mv male)
TTCATGAGCGGCAACACGGATTTCGCGTTTCCGCGCATCAAGAACTTTGA CTATGACGCCTTCACCAACGGCTTTAAGACACATGTCAACGCATCGCTGG GTGATGATCTGGTAAAAGATGTTCTGATCGGGCAGGTCGATCACTTTGCC AGCAGCGATGTACGCGCCAGAAGTGCTGCGCGCCGTGCGCAGCTGCGGGA CGAAGGCGACCAGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102347:2..217+

>mRNA_L-digitata_M_contig102347.1.1 ID=mRNA_L-digitata_M_contig102347.1.1|Name=mRNA_L-digitata_M_contig102347.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig102347:2..217+ (Laminaria digitata LdigPH10_18mv male)
ATGAGCGGCAACACGGATTTCGCGTTTCCGCGCATCAAGAACTTTGACTA
TGACGCCTTCACCAACGGCTTTAAGACACATGTCAACGCATCGCTGGGTG
ATGATCTGGTAAAAGATGTTCTGATCGGGCAGGTCGATCACTTTGCCAGC
AGCGATGTACGCGCCAGAAGTGCTGCGCGCCGTGCGCAGCTGCGGGACGA
AGGCGACCAGTAG
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