mRNA_L-digitata_M_contig102321.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102321.1.1
Unique NamemRNA_L-digitata_M_contig102321.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102321.1.1 vs. uniprot
Match: A0A1Y1I9L4_KLENI (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I9L4_KLENI)

HSP 1 Score: 48.5 bits (114), Expect = 6.400e-5
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   31 WHAFYANDDKYKHRGLLAGRFYDDKGKPTPALAEFERCVEEGREEKKREAEEKK 192
            W  FY   ++YK  G+LAGR+YDD+G+ T AL   E  +EE   E  R  EE+K
Sbjct:  152 WRQFYV--ERYKQVGVLAGRYYDDRGEATAALRSVEAALEEAAHEDARRKEEEK 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102321.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y1I9L4_KLENI6.400e-546.30Cytochrome b5 heme-binding domain-containing prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102321contigL-digitata_M_contig102321:91..288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FSS5
Preferred nameCYB5D2
PFAMsCyt-b5
Model size198
Max annot lvl2759|Eukaryota
KEGG rclassRC00109,RC00110,RC00158
KEGG koko:K00287
KEGG ReactionR00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathwayko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG ModuleM00126,M00840
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0012505,GO:0016020,GO:0020037,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046906,GO:0048037,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0097159,GO:1901363,GO:2000026
Exons1
Evalue7.14e-15
EggNOG OGsKOG1110@1|root,KOG1108@2759|Eukaryota
Ec32 ortholog descriptionCytochrome b5-like heme/steroid binding domain
Ec32 orthologEc-09_001470.1
EC1.5.1.3
Descriptionheme binding
Cds size198
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.2615469-CDS-L-digitata_M_contig102321:90..2881682406628.2615469-CDS-L-digitata_M_contig102321:90..288Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102321 91..288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102321.1.1prot_L-digitata_M_contig102321.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102321 91..288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102321.1.1

>prot_L-digitata_M_contig102321.1.1 ID=prot_L-digitata_M_contig102321.1.1|Name=mRNA_L-digitata_M_contig102321.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=66bp
SPPPLIYPQDWHAFYANDDKYKHRGLLAGRFYDDKGKPTPALAEFERCVE
EGREEKKREAEEKKL*
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mRNA from alignment at L-digitata_M_contig102321:91..288-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102321.1.1 ID=mRNA_L-digitata_M_contig102321.1.1|Name=mRNA_L-digitata_M_contig102321.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=198bp|location=Sequence derived from alignment at L-digitata_M_contig102321:91..288- (Laminaria digitata LdigPH10_18mv male)
TCCCCCCCCCCTCTTATTTATCCCCAGGACTGGCACGCGTTTTATGCGAA
CGACGATAAGTACAAGCACCGGGGGTTACTCGCGGGTCGGTTCTACGACG
ACAAGGGCAAGCCCACCCCGGCGCTCGCGGAATTCGAGCGGTGTGTGGAG
GAGGGGCGGGAAGAGAAGAAGCGGGAGGCCGAGGAGAAAAAACTGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig102321:91..288-

>mRNA_L-digitata_M_contig102321.1.1 ID=mRNA_L-digitata_M_contig102321.1.1|Name=mRNA_L-digitata_M_contig102321.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=198bp|location=Sequence derived from alignment at L-digitata_M_contig102321:91..288- (Laminaria digitata LdigPH10_18mv male)
TCCCCCCCCCCTCTTATTTATCCCCAGGACTGGCACGCGTTTTATGCGAA
CGACGATAAGTACAAGCACCGGGGGTTACTCGCGGGTCGGTTCTACGACG
ACAAGGGCAAGCCCACCCCGGCGCTCGCGGAATTCGAGCGGTGTGTGGAG
GAGGGGCGGGAAGAGAAGAAGCGGGAGGCCGAGGAGAAAAAACTGTGA
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