mRNA_L-digitata_M_contig102305.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102305.1.1
Unique NamemRNA_L-digitata_M_contig102305.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: D7FQK3_ECTSI (Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK3_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.890e-20
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   13 QDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEVRML 156
            QDLA MVKNLLISF+RVNNAKPARIIFFRDGVSEGQFREVLRYEVR +
Sbjct:  746 QDLASMVKNLLISFYRVNNAKPARIIFFRDGVSEGQFREVLRYEVRAI 793
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: A0A2S1PRW8_FUCSE (Putative argonaute n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRW8_FUCSE)

HSP 1 Score: 87.8 bits (216), Expect = 5.920e-19
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:   13 QDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEVRML 156
            QDLA MVKNLLISF+RVNN+KP+RIIFFRDGVSEGQFREVLR+EVR +
Sbjct:  755 QDLAAMVKNLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRFEVRAI 802
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: A0A7J7KEB9_BUGNE (AGO1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KEB9_BUGNE)

HSP 1 Score: 72.8 bits (177), Expect = 1.130e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 DLWQDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEVRML 156
            ++ +DLA MVKNLLISF+R    KP RIIF+RDGVSEGQF +VL YE+R +
Sbjct:  685 EIIEDLATMVKNLLISFYRATGYKPTRIIFYRDGVSEGQFSQVLSYELRAI 735
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: A0A2T9YYV5_9FUNG (Uncharacterized protein n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9YYV5_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 1.880e-12
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 DLWQDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEVRMLH 159
            ++ Q+LA +V+  L+SF++ NNAKPARI+F+RDGVSEGQF EV+  EV+ +H
Sbjct:  649 EIIQNLAGIVREQLVSFYQANNAKPARIVFYRDGVSEGQFAEVMATEVQAIH 700
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: A0A0B6YW52_9EUPU (Piwi domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YW52_9EUPU)

HSP 1 Score: 63.9 bits (154), Expect = 1.240e-11
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   16 DLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEVR 150
            DLA MVK LLI F+R    KP RIIF+RDGVSEGQF  VL +E+R
Sbjct:   84 DLATMVKELLIQFYRTTRFKPTRIIFYRDGVSEGQFSTVLGHELR 128
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: A0A8D1WC17_PIG (Piwi domain-containing protein n=31 Tax=Euteleostomi TaxID=117571 RepID=A0A8D1WC17_PIG)

HSP 1 Score: 65.9 bits (159), Expect = 1.380e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 DLWQDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEV 147
            ++ QDLA MV+ LLI F++    KP RIIF+RDGVSEGQFR+VL YE+
Sbjct:   20 EIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYEL 67
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: A0A0S7GEJ3_9TELE (AGO4 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GEJ3_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 1.530e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   13 QDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEV 147
            QDL  MV+ LLI F++    KP RIIF+RDGVSEGQFR+VL YE+
Sbjct:   33 QDLTNMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYEL 77
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: A0A3Q2D7M8_CYPVA (Piwi domain-containing protein n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2D7M8_CYPVA)

HSP 1 Score: 66.2 bits (160), Expect = 1.590e-11
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   13 QDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEV 147
            QDLA MV+ LLI F++    KP RIIF+RDGVSEGQFR+VL YE+
Sbjct:   80 QDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLHYEL 124
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: A0A8C2U006_COTJA (Argonaute RISC catalytic component 3 n=1 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2U006_COTJA)

HSP 1 Score: 66.6 bits (161), Expect = 1.670e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 DLWQDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEV 147
            ++ QDLA MV+ LLI F++    KP RIIF+RDGVSEGQFR+VL YE+
Sbjct:  583 EIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYEL 630
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BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Match: UPI0007776670 (protein argonaute-3 isoform X1 n=1 Tax=Coturnix japonica TaxID=93934 RepID=UPI0007776670)

HSP 1 Score: 66.6 bits (161), Expect = 1.680e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 DLWQDLAVMVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEV 147
            ++ QDLA MV+ LLI F++    KP RIIF+RDGVSEGQFR+VL YE+
Sbjct:  638 EIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYEL 685
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102305.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQK3_ECTSI4.890e-2091.67Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A2S1PRW8_FUCSE5.920e-1985.42Putative argonaute n=1 Tax=Fucus serratus TaxID=87... [more]
A0A7J7KEB9_BUGNE1.130e-1364.71AGO1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
A0A2T9YYV5_9FUNG1.880e-1257.69Uncharacterized protein n=2 Tax=Harpellales TaxID=... [more]
A0A0B6YW52_9EUPU1.240e-1166.67Piwi domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8D1WC17_PIG1.380e-1162.50Piwi domain-containing protein n=31 Tax=Euteleosto... [more]
A0A0S7GEJ3_9TELE1.530e-1164.44AGO4 n=1 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A3Q2D7M8_CYPVA1.590e-1166.67Piwi domain-containing protein n=1 Tax=Cyprinodon ... [more]
A0A8C2U006_COTJA1.670e-1162.50Argonaute RISC catalytic component 3 n=1 Tax=Cotur... [more]
UPI00077766701.680e-1162.50protein argonaute-3 isoform X1 n=1 Tax=Coturnix ja... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102305contigL-digitata_M_contig102305:591..749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQK3
PFAMsArgoL1,ArgoL2,ArgoMid,ArgoN,PAZ,Piwi
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K11593
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.47e-18
EggNOG OGsKOG1041@1|root,KOG1041@2759|Eukaryota
Descriptiongene silencing by RNA
Cds size132
COG categoryK
BRITEko00000,ko03019,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.2258337-UTR-L-digitata_M_contig102305:590..6171682406628.2258337-UTR-L-digitata_M_contig102305:590..617Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig102305 591..617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.2342677-CDS-L-digitata_M_contig102305:617..7491682406628.2342677-CDS-L-digitata_M_contig102305:617..749Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102305 618..749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102305.1.1prot_L-digitata_M_contig102305.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102305 618..749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102305.1.1

>prot_L-digitata_M_contig102305.1.1 ID=prot_L-digitata_M_contig102305.1.1|Name=mRNA_L-digitata_M_contig102305.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=44bp
MVKNLLISFFRVNNAKPARIIFFRDGVSEGQFREVLRYEVRMLH
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mRNA from alignment at L-digitata_M_contig102305:591..749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102305.1.1 ID=mRNA_L-digitata_M_contig102305.1.1|Name=mRNA_L-digitata_M_contig102305.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=159bp|location=Sequence derived from alignment at L-digitata_M_contig102305:591..749+ (Laminaria digitata LdigPH10_18mv male)
CTTGACTTGTGGCAGGACCTGGCGGTGATGGTGAAGAACCTCCTGATCTC
GTTCTTCCGCGTGAACAACGCCAAGCCGGCCCGCATCATCTTCTTCCGCG
ACGGCGTGAGCGAGGGACAGTTCCGCGAGGTCCTCAGATACGAGGTACGT
ATGTTACAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig102305:591..749+

>mRNA_L-digitata_M_contig102305.1.1 ID=mRNA_L-digitata_M_contig102305.1.1|Name=mRNA_L-digitata_M_contig102305.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=132bp|location=Sequence derived from alignment at L-digitata_M_contig102305:591..749+ (Laminaria digitata LdigPH10_18mv male)
ATGGTGAAGAACCTCCTGATCTCGTTCTTCCGCGTGAACAACGCCAAGCC
GGCCCGCATCATCTTCTTCCGCGACGGCGTGAGCGAGGGACAGTTCCGCG
AGGTCCTCAGATACGAGGTACGTATGTTACAT
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