mRNA_L-digitata_M_contig102289.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A2E8XPM0_9PROT (RNA methyltransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XPM0_9PROT) HSP 1 Score: 308 bits (790), Expect = 4.860e-101 Identity = 157/225 (69.78%), Postives = 176/225 (78.22%), Query Frame = 1
Query: 10 VPATHGPGPDASMELAMFAEREDIARISWQDDDGVEPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVHGTKIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
+ A H PGPDAS+ LAMFAERED+AR+SW+ VEP+A+R PVL++SG V+IPPG FLQASAEAE LS LVC G+ IADLYCG GTFALPLA GANV AVDGDG AVEA+AR AG GGFGGQV TEIRDL +RP A+LK F+TVVFDPPRAGAAAQ E+ S V RVVAVSCNPATFA+DA L GG+ LE VTP+DQFVWSGHVELV F R
Sbjct: 206 ISANHAPGPDASLALAMFAEREDLARVSWKTGGEVEPVAMRRRPVLEVSGHPVDIPPGVFLQASAEAERALSQLVCDGAAGSNIADLYCGTGTFALPLAAGGANVMAVDGDGAAVEALARAAGTGGFGGQVRTEIRDLAKRPFTTAELKGFDTVVFDPPRAGAAAQAGELANSDVARVVAVSCNPATFARDARILADGGYALEQVTPIDQFVWSGHVELVGVFRR 430
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A2E7PN86_9PROT (TRAM domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PN86_9PROT) HSP 1 Score: 291 bits (744), Expect = 4.190e-94 Identity = 149/230 (64.78%), Postives = 174/230 (75.65%), Query Frame = 1
Query: 1 EIQVPATHGPGPDASMELAMFAEREDIARISWQ--DDDGVEPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVHGTKIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
++ + A H PGPDA LAMFA+ +DIARI+W+ VEP+A R PVL+ISG +VEIPPG FLQASA+AE +L LV AA G ++ADLYCGVGTFALPLA AGANV AVDGD A+ A+AR AG+ GFGGQV TE+RDLVRRP+ AADL ET+VFDPPR GA QVAEI ++ RVVAVSCNP TFA+DA L GF L+ VTPVDQF+WSGHVELV F R
Sbjct: 199 DLLIAANHDPGPDAGKALAMFADAQDIARIAWRHTQQSEVEPVAFRQVPVLEISGVSVEIPPGVFLQASADAERVLGELVTAAAGGARVADLYCGVGTFALPLAAAGANVIAVDGDAAAIGALARAAGMAGFGGQVETEVRDLVRRPLAAADLAGAETIVFDPPRGGAQVQVAEIAQTNAARVVAVSCNPTTFARDARTLADAGFTLQRVTPVDQFIWSGHVELVGVFSR 428
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A848W6T6_9PROT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W6T6_9PROT) HSP 1 Score: 227 bits (578), Expect = 4.480e-70 Identity = 120/224 (53.57%), Postives = 155/224 (69.20%), Query Frame = 1
Query: 28 PGPDASMELAMFAEREDIARISWQDD-DGVEPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVHG----TKIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
P P ++ A FAE D+AR+SW + G+EP+A R P ++ G V +PPG FLQASA AE I++GLV + ++ADL+ G+GTF LP+A GA V AVD G + + G GF G+V+ E RDL RP+MAA+LK + VVFDPPRAGAAA V ++ +S VP VVAVSCNPATFA+DA AL+AGG++L VTPVDQFV++GHVELVA F+R
Sbjct: 126 PRPKQTLAFAAFAEEVDLARVSWTSERTGIEPVAQRRPPAVNFDGVAVVLPPGAFLQASAAAEKIMAGLVLENLATLPPRARVADLFAGLGTFTLPIAAEGARVHAVDSAGDGLNGLLAATGAAGFSGRVTVETRDLSERPLMAAELKDYAAVVFDPPRAGAAAVVRQLAESKVPSVVAVSCNPATFARDAAALIAGGYRLTRVTPVDQFVYTGHVELVAGFVR 349
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A4R3JAH9_9PROT (23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3JAH9_9PROT) HSP 1 Score: 207 bits (528), Expect = 1.970e-61 Identity = 115/226 (50.88%), Postives = 147/226 (65.04%), Query Frame = 1
Query: 16 ATHGPGPDASMELAMFAEREDIARISWQDDDGVEP--IAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVHGT-KIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
A+ P + L FA R D+AR+SW + DG P I V P + +GT V +P G FLQASAE E ++ + V G +IA+LYCG+G+F LA+ A VFAV+G PAV A+ R AG G GG + E+RDL R P+ A +LK F+TVVFDPPRAGAAAQ A + +VAVSCNPATFA+DA LV GG+ L+S+TP+DQF +S HVELVA F +
Sbjct: 225 ASCAPNLNMRQRLVDFAARFDLARVSWDNADGAGPEAIVVHREPYMTFAGTRVALPQGGFLQASAEGERAITAAIARRVGGAARIAELYCGMGSFTFALAQI-APVFAVEGFAPAVRALERAAGRAGLGGMIRAEVRDLDRAPLDARELKRFDTVVFDPPRAGAAAQAAALAHGAARTIVAVSCNPATFARDARILVDGGYALQSLTPIDQFAYSAHVELVAGFAK 449
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A212KLM5_9PROT (Putative enzyme n=1 Tax=uncultured Alphaproteobacteria bacterium TaxID=91750 RepID=A0A212KLM5_9PROT) HSP 1 Score: 206 bits (525), Expect = 3.320e-61 Identity = 113/219 (51.60%), Postives = 137/219 (62.56%), Query Frame = 1
Query: 31 GPDASMELAMFAEREDIARISWQDDDGVEPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVHGT-KIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
G +A LA FA D+AR++W G EP+AV P + G V P +FLQ SAE E L V + ++ADL+CG+GTFALP+A+ VFA D DG AV A+A G G GG+V RDL R P+ AA+L F+ VVFDPPRAGA AQ E+ S VP VVAVSCNPA+FA+DA L GG+ LE VTPVDQF + HVELVA F R
Sbjct: 211 GWEAREALAAFAAAHDLARLAWDFGHGPEPLAVARPPAMTFGGVAVPFPAASFLQPSAEGEAALRDAVLDGLGAAERVADLFCGLGTFALPVARRARRVFAADADGAAVRALAAGVAAAGLGGRVEVAARDLFRDPLSAAELDAFDAVVFDPPRAGAQAQARELAASAVPLVVAVSCNPASFARDARTLADGGYALERVTPVDQFPTNAHVELVAVFRR 429
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A848ZBU2_9PROT (Class I SAM-dependent RNA methyltransferase n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848ZBU2_9PROT) HSP 1 Score: 206 bits (524), Expect = 5.030e-61 Identity = 123/224 (54.91%), Postives = 147/224 (65.62%), Query Frame = 1
Query: 28 PGPD---ASMELAMFAEREDIARISWQDDDGV-EPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVH-GTKIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
PGP A LA AE +AR+S + DG EP+A R L + G V +PPG+FLQASAE L+ LV V ++ADL+CGVGTFALPLA A VFAVD PA+ A+A A G G++ E R+L R P+ A+L F VVFDPPRAGAAAQ A + SPVP VV VSCNPA+FA+DA ALVAGG++LE VTPVDQF+WS HVELV F R
Sbjct: 210 PGPPDLAAWERLAALAETAALARLSVRTGDGEPEPVAARRPATLILGGVPVAVPPGSFLQASAEGGAALTRLVRDGVGTAARVADLFCGVGTFALPLAGR-AKVFAVDSARPALAALAAAAAGSGLDGRLRAEFRNLFRDPLAGAELSGFGAVVFDPPRAGAAAQAAALAASPVPVVVGVSCNPASFARDAAALVAGGYRLERVTPVDQFLWSAHVELVGVFRR 432
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A211ZN92_9PROT (TRAM domain-containing protein n=6 Tax=Bacteria TaxID=2 RepID=A0A211ZN92_9PROT) HSP 1 Score: 202 bits (514), Expect = 1.800e-59 Identity = 112/213 (52.58%), Postives = 146/213 (68.54%), Query Frame = 1
Query: 52 LAMFAEREDIARISWQDDDG-VEPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVHGTK-IADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
LA FA +D+AR+SW+ DG +P+A R V+ V +PPG FLQASAE E L+ LV V K IADL+CG GTFALP+A+ GA V A+DG+ +VEA+A A GG G +++ + RDL R+P+ AA+L+ F+ VVFDPPRAGA Q + S VP VVAVSCNP++ A+DA LV GG++LE TPVDQF+W+ H+E VA F R
Sbjct: 227 LAEFAAAQDLARLSWRGADGFTDPVAHRRAGVVHFDEVPVAVPPGGFLQASAEGEAALTRLVRDGVGQAKRIADLFCGAGTFALPMAR-GAQVTAIDGEAASVEALASAARRGGRGERITAQRRDLFRQPLTAAELRGFDAVVFDPPRAGARDQAEALAASTVPVVVAVSCNPSSLARDARTLVDGGYRLERATPVDQFLWTPHLEAVAVFRR 438
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: UPI000372A3B9 (TRAM domain-containing protein n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI000372A3B9) HSP 1 Score: 201 bits (511), Expect = 3.340e-59 Identity = 109/212 (51.42%), Postives = 140/212 (66.04%), Query Frame = 1
Query: 52 LAMFAEREDIARISWQDDDGVEPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVHGT-KIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
L F DIA + WQ+ ++P+A+R PV+D G +V +PP F+QA+ E E L+G V AA G ++ADL+ G+GTF PLA+ G V A +G A++A+ G QV T RDL R+P+ AA+L + VVFDPPRAGAAAQVAEI KS V RVVAVSCNP TF++DA LV GG+ L+SV PVDQF+WS H+ELV F R
Sbjct: 210 LVEFVNAHDIASLHWQEQGFLDPVAIRREPVMDFGGVHVPLPPAAFIQATDEGEAALAGAVVAACEGYGRVADLFSGIGTFTFPLAR-GHQVMAAEGAKSALDALKAGVSTATGLRQVITRHRDLFRQPISAAELDKIDAVVFDPPRAGAAAQVAEIAKSTVKRVVAVSCNPNTFSRDARTLVDGGYTLDSVLPVDQFLWSPHLELVGVFTR 420
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A2E3XCY0_9PROT (RNA methyltransferase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3XCY0_9PROT) HSP 1 Score: 199 bits (505), Expect = 4.020e-58 Identity = 105/225 (46.67%), Postives = 150/225 (66.67%), Query Frame = 1
Query: 28 PGPDASMELAMFAEREDIARISWQDD-DGVEPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAV-----HGTKIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
P P S+ LA FAE D+AR+SW G+EPI++R PV+ +G V +PPG FLQAS +AE ++ +V + +ADL+ G+GT +P+A AGA V A+D + A+ ++ AG GF G+V E R+L +RP++ ++LK + VVFDPPR+GAAA + S VP ++AVSCNPATFA+DA+ +++GG+ L VTPVDQFV+S H+ELVA F +
Sbjct: 212 PLPKQSLLLANFAEEFDLARVSWCSKLSGLEPISLRRHPVVTFNGVGVAVPPGVFLQASTQAEKLIIDIVIENLATLPKRRAHVADLFSGIGTLTIPIAAAGARVKAIDNNTEAINSLLXAAGAAGFSGRVKXENRNLFQRPLIPSELKKYHAVVFDPPRSGAAAVARNLSISEVPLLIAVSCNPATFARDASIIISGGYTLNRVTPVDQFVYSKHIELVAMFTK 436
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Match: A0A3N1KXC9_9PROT (23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1KXC9_9PROT) HSP 1 Score: 198 bits (503), Expect = 5.450e-58 Identity = 117/230 (50.87%), Postives = 142/230 (61.74%), Query Frame = 1
Query: 4 IQVPATHGPGPDASMELAMFAEREDIARISWQDDDGV--EPIAVRHTPVLDISGTNVEIPPGTFLQASAEAEGILSGLVCAAVH-GTKIADLYCGVGTFALPLAKAGANVFAVDGDGPAVEAMARGAGLGGFGGQVSTEIRDLVRRPMMAADLKFFETVVFDPPRAGAAAQVAEIVKSPVPRVVAVSCNPATFAKDANALVAGGFKLESVTPVDQFVWSGHVELVAAFLR 684
+ VP T G A LA AE D+AR+S DD EP+A+R P + G V PPG FLQA +E +LS LV AV G +ADL+ G GTFAL +A V A D D PA+EA+ GA GG G +V+ E RDL RRP A+++ + + DPPRAGAAA + +S VPRVV VSCNP TFA+DA LVAGG +LE TPVDQF+WS HVELVA F R
Sbjct: 194 LVVPGTFG--APARTALARLAEDLDLARLSVAPDDRTAPEPVAIRRAPRVRFGGIAVTPPPGGFLQAGMRSEAVLSALVAEAVPAGATVADLHAGCGTFALAVAGKARRVLAFDRDAPALEALLAGARAGGVGNRVTVERRDLDRRPPTLAEMRTWTAAILDPPRAGAAALADALARSAVPRVVYVSCNPVTFARDAARLVAGGLRLEQATPVDQFLWSPHVELVAVFRR 421 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102289.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig102289.1.1 >prot_L-digitata_M_contig102289.1.1 ID=prot_L-digitata_M_contig102289.1.1|Name=mRNA_L-digitata_M_contig102289.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=229bp EIQVPATHGPGPDASMELAMFAEREDIARISWQDDDGVEPIAVRHTPVLDback to top mRNA from alignment at L-digitata_M_contig102289:2..688+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig102289.1.1 ID=mRNA_L-digitata_M_contig102289.1.1|Name=mRNA_L-digitata_M_contig102289.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=687bp|location=Sequence derived from alignment at L-digitata_M_contig102289:2..688+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig102289:2..688+ >mRNA_L-digitata_M_contig102289.1.1 ID=mRNA_L-digitata_M_contig102289.1.1|Name=mRNA_L-digitata_M_contig102289.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=687bp|location=Sequence derived from alignment at L-digitata_M_contig102289:2..688+ (Laminaria digitata LdigPH10_18mv male)back to top |