mRNA_L-digitata_M_contig102283.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102283.2.1
Unique NamemRNA_L-digitata_M_contig102283.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2E7PJK8_9PROT (ABC transporter permease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PJK8_9PROT)

HSP 1 Score: 113 bits (283), Expect = 1.450e-29
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            MD F  AF EAGALL S D DFL IVGLSLRVSL+AVA+ACLIGFPLGA VAL +FPGRG V LLLNTFMGLPPVV
Sbjct:    1 MDIFVTAFTEAGALLVSFDPDFLSIVGLSLRVSLTAVALACLIGFPLGALVALARFPGRGAVILLLNTFMGLPPVV 76          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2E7I5V3_9PROT (ABC transporter permease n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I5V3_9PROT)

HSP 1 Score: 112 bits (279), Expect = 5.760e-29
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            MDTF  AFAEAGALL S D  FL IVGLS+R+SL+AV +ACLIGFPLGA VAL  FPGRG V+LLLNTFMGLPPVV
Sbjct:    1 MDTFVTAFAEAGALLVSFDLGFLSIVGLSMRISLTAVVLACLIGFPLGAIVALTHFPGRGAVTLLLNTFMGLPPVV 76          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2E8XSS4_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XSS4_9PROT)

HSP 1 Score: 110 bits (276), Expect = 1.620e-28
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            M+TF  AF+EAGALL S DADFL IVGLSLRVSL+AVAIACLIGFPLG  ++L +FPGRG   LLLNTFMG+PPVV
Sbjct:    1 METFVTAFSEAGALLVSFDADFLSIVGLSLRVSLTAVAIACLIGFPLGTLISLARFPGRGGAVLLLNTFMGMPPVV 76          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A7C5SDS4_9PROT (ABC transporter permease subunit n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SDS4_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 3.760e-24
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    4 DTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            DTF  AF+EA  L+ASLDA  LEIVGLSL+VSLSAVAIA LIG PLGAA+AL++FPGR  V+LL +  MGLPPVV
Sbjct:    3 DTFLSAFSEAARLIASLDAGLLEIVGLSLQVSLSAVAIAALIGLPLGAALALFRFPGRRAVALLFSALMGLPPVV 77          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2N3C6V2_9PROT (ABC transporter permease (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-2 TaxID=2013665 RepID=A0A2N3C6V2_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 9.810e-24
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPV 225
            M  F   FA A  L+AS DAD LEIVGLSLRV+L+AVA+ACLIG PLGA V  ++FPGRG V+LLLN  MGLPPV
Sbjct:    1 MQDFSSIFAAAFGLIASGDADLLEIVGLSLRVTLTAVAMACLIGLPLGAMVGAFRFPGRGAVTLLLNALMGLPPV 75          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A7D7VND9_9GAMM (ABC transporter permease subunit n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7D7VND9_9GAMM)

HSP 1 Score: 92.8 bits (229), Expect = 1.620e-21
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            M+ F HAF++A  L+  LD   +EI+GLSLRVS++AV IA LIG PLGAA+ALYKF GRG++  LLN FMGLPPVV
Sbjct:    1 MNDFSHAFSKAFQLIFQLDPALIEIIGLSLRVSITAVFIASLIGLPLGAALALYKFHGRGIIVALLNAFMGLPPVV 76          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A222F7G6_9HYPH (ABC transporter permease n=1 Tax=Labrenzia sp. VG12 TaxID=2021862 RepID=A0A222F7G6_9HYPH)

HSP 1 Score: 92.0 bits (227), Expect = 3.280e-21
Identity = 45/76 (59.21%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            MD+F+ AFA A  L+ +LD D +EI+GLS++V+L+AV ++CLIG PLGAAVA ++FPGR ++S++LN  MGLPPVV
Sbjct:    1 MDSFWGAFAGAFGLVFALDPDLMEIIGLSMQVTLTAVLLSCLIGLPLGAAVACFRFPGRTLISIVLNALMGLPPVV 76          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: K2K954_9PROT (Binding-protein-dependent transport system inner membrane protein n=3 Tax=Oceanibaculum TaxID=659693 RepID=K2K954_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 4.530e-21
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            M  FF AF  A AL+A  D++ L+IV LSL VSLSAVAIA LIG PLGAAVAL++FPGRG V ++LN  MGLPPVV
Sbjct:    1 MFEFFSAFKTAFALIAGFDSELLQIVALSLSVSLSAVAIAALIGLPLGAAVALWRFPGRGAVIVVLNACMGLPPVV 76          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2R8BK67_9RHOB (Tungstate uptake system permease protein TupB n=1 Tax=Defluviimonas aquaemixtae TaxID=1542388 RepID=A0A2R8BK67_9RHOB)

HSP 1 Score: 91.3 bits (225), Expect = 6.510e-21
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            MD+F+    +A  L+A+ D D LEI+GLSLRV+L+AVA AC+IG PLGAAV  ++FPGR VVS++LN+ MGLPPVV
Sbjct:    1 MDSFWALLGDAVDLIAAGDRDLLEIIGLSLRVTLTAVAAACMIGLPLGAAVGAFRFPGRTVVSIVLNSLMGLPPVV 76          
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: UPI0012BCD663 (ABC transporter permease n=1 Tax=Roseibium denhamense TaxID=76305 RepID=UPI0012BCD663)

HSP 1 Score: 90.9 bits (224), Expect = 9.160e-21
Identity = 45/76 (59.21%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
            MD+F+ A  EA  L+ +LD+D LEI+GLS++V+++AV+IACLIG P+GAAVA ++FPGR  +++LLN  MGLPPVV
Sbjct:    1 MDSFWSALLEALHLVITLDSDLLEIIGLSMQVTITAVSIACLIGLPIGAAVAAFRFPGRTFLAVLLNAMMGLPPVV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PJK8_9PROT1.450e-2980.26ABC transporter permease n=1 Tax=Rhodospirillaceae... [more]
A0A2E7I5V3_9PROT5.760e-2977.63ABC transporter permease n=2 Tax=Alphaproteobacter... [more]
A0A2E8XSS4_9PROT1.620e-2876.32ABC transporter permease n=1 Tax=Alphaproteobacter... [more]
A0A7C5SDS4_9PROT3.760e-2472.00ABC transporter permease subunit n=1 Tax=Thermopet... [more]
A0A2N3C6V2_9PROT9.810e-2468.00ABC transporter permease (Fragment) n=1 Tax=Alphap... [more]
A0A7D7VND9_9GAMM1.620e-2164.47ABC transporter permease subunit n=1 Tax=Gammaprot... [more]
A0A222F7G6_9HYPH3.280e-2159.21ABC transporter permease n=1 Tax=Labrenzia sp. VG1... [more]
K2K954_9PROT4.530e-2167.11Binding-protein-dependent transport system inner m... [more]
A0A2R8BK67_9RHOB6.510e-2161.84Tungstate uptake system permease protein TupB n=1 ... [more]
UPI0012BCD6639.160e-2159.21ABC transporter permease n=1 Tax=Roseibium denhame... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102283contigL-digitata_M_contig102283:687..914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog384765.SIAM614_22517
Preferred nameMA20_34300
PFAMsBPD_transp_1
Model size228
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K05773
KEGG TC3.A.1.6.2,3.A.1.6.4
KEGG Pathwayko02010,map02010
KEGG ModuleM00186
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.72e-22
EggNOG OGsCOG4662@1|root,COG4662@2|Bacteria,1MZVS@1224|Proteobacteria,2TUHN@28211|Alphaproteobacteria
DescriptionABC-type tungstate transport system, periplasmic component
Cds size228
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.1478739-CDS-L-digitata_M_contig102283:686..9141682406628.1478739-CDS-L-digitata_M_contig102283:686..914Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102283 687..914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102283.2.1prot_L-digitata_M_contig102283.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102283 687..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102283.2.1

>prot_L-digitata_M_contig102283.2.1 ID=prot_L-digitata_M_contig102283.2.1|Name=mRNA_L-digitata_M_contig102283.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=76bp
MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAA
VALYKFPGRGVVSLLLNTFMGLPPVV
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mRNA from alignment at L-digitata_M_contig102283:687..914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102283.2.1 ID=mRNA_L-digitata_M_contig102283.2.1|Name=mRNA_L-digitata_M_contig102283.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=228bp|location=Sequence derived from alignment at L-digitata_M_contig102283:687..914+ (Laminaria digitata LdigPH10_18mv male)
ATGGACACCTTCTTTCACGCCTTTGCCGAAGCTGGCGCGCTGCTTGCCAG TCTGGACGCAGATTTTCTTGAGATCGTCGGGCTGTCCCTGCGGGTCAGTC TGAGCGCTGTGGCGATTGCGTGCCTGATCGGGTTTCCGCTGGGGGCGGCC GTCGCGCTGTACAAGTTTCCCGGGCGTGGCGTGGTATCCCTGCTGCTCAA CACCTTCATGGGTCTTCCACCGGTCGTT
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Coding sequence (CDS) from alignment at L-digitata_M_contig102283:687..914+

>mRNA_L-digitata_M_contig102283.2.1 ID=mRNA_L-digitata_M_contig102283.2.1|Name=mRNA_L-digitata_M_contig102283.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=228bp|location=Sequence derived from alignment at L-digitata_M_contig102283:687..914+ (Laminaria digitata LdigPH10_18mv male)
ATGGACACCTTCTTTCACGCCTTTGCCGAAGCTGGCGCGCTGCTTGCCAG
TCTGGACGCAGATTTTCTTGAGATCGTCGGGCTGTCCCTGCGGGTCAGTC
TGAGCGCTGTGGCGATTGCGTGCCTGATCGGGTTTCCGCTGGGGGCGGCC
GTCGCGCTGTACAAGTTTCCCGGGCGTGGCGTGGTATCCCTGCTGCTCAA
CACCTTCATGGGTCTTCCACCGGTCGTT
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