mRNA_L-digitata_M_contig102283.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2E7PJK8_9PROT (ABC transporter permease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PJK8_9PROT) HSP 1 Score: 113 bits (283), Expect = 1.450e-29 Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
MD F AF EAGALL S D DFL IVGLSLRVSL+AVA+ACLIGFPLGA VAL +FPGRG V LLLNTFMGLPPVV
Sbjct: 1 MDIFVTAFTEAGALLVSFDPDFLSIVGLSLRVSLTAVALACLIGFPLGALVALARFPGRGAVILLLNTFMGLPPVV 76
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2E7I5V3_9PROT (ABC transporter permease n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I5V3_9PROT) HSP 1 Score: 112 bits (279), Expect = 5.760e-29 Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
MDTF AFAEAGALL S D FL IVGLS+R+SL+AV +ACLIGFPLGA VAL FPGRG V+LLLNTFMGLPPVV
Sbjct: 1 MDTFVTAFAEAGALLVSFDLGFLSIVGLSMRISLTAVVLACLIGFPLGAIVALTHFPGRGAVTLLLNTFMGLPPVV 76
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2E8XSS4_9PROT (ABC transporter permease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XSS4_9PROT) HSP 1 Score: 110 bits (276), Expect = 1.620e-28 Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
M+TF AF+EAGALL S DADFL IVGLSLRVSL+AVAIACLIGFPLG ++L +FPGRG LLLNTFMG+PPVV
Sbjct: 1 METFVTAFSEAGALLVSFDADFLSIVGLSLRVSLTAVAIACLIGFPLGTLISLARFPGRGGAVLLLNTFMGMPPVV 76
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A7C5SDS4_9PROT (ABC transporter permease subunit n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SDS4_9PROT) HSP 1 Score: 99.8 bits (247), Expect = 3.760e-24 Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 4 DTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
DTF AF+EA L+ASLDA LEIVGLSL+VSLSAVAIA LIG PLGAA+AL++FPGR V+LL + MGLPPVV
Sbjct: 3 DTFLSAFSEAARLIASLDAGLLEIVGLSLQVSLSAVAIAALIGLPLGAALALFRFPGRRAVALLFSALMGLPPVV 77
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2N3C6V2_9PROT (ABC transporter permease (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-2 TaxID=2013665 RepID=A0A2N3C6V2_9PROT) HSP 1 Score: 94.4 bits (233), Expect = 9.810e-24 Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPV 225
M F FA A L+AS DAD LEIVGLSLRV+L+AVA+ACLIG PLGA V ++FPGRG V+LLLN MGLPPV
Sbjct: 1 MQDFSSIFAAAFGLIASGDADLLEIVGLSLRVTLTAVAMACLIGLPLGAMVGAFRFPGRGAVTLLLNALMGLPPV 75
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A7D7VND9_9GAMM (ABC transporter permease subunit n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7D7VND9_9GAMM) HSP 1 Score: 92.8 bits (229), Expect = 1.620e-21 Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
M+ F HAF++A L+ LD +EI+GLSLRVS++AV IA LIG PLGAA+ALYKF GRG++ LLN FMGLPPVV
Sbjct: 1 MNDFSHAFSKAFQLIFQLDPALIEIIGLSLRVSITAVFIASLIGLPLGAALALYKFHGRGIIVALLNAFMGLPPVV 76
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A222F7G6_9HYPH (ABC transporter permease n=1 Tax=Labrenzia sp. VG12 TaxID=2021862 RepID=A0A222F7G6_9HYPH) HSP 1 Score: 92.0 bits (227), Expect = 3.280e-21 Identity = 45/76 (59.21%), Postives = 63/76 (82.89%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
MD+F+ AFA A L+ +LD D +EI+GLS++V+L+AV ++CLIG PLGAAVA ++FPGR ++S++LN MGLPPVV
Sbjct: 1 MDSFWGAFAGAFGLVFALDPDLMEIIGLSMQVTLTAVLLSCLIGLPLGAAVACFRFPGRTLISIVLNALMGLPPVV 76
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: K2K954_9PROT (Binding-protein-dependent transport system inner membrane protein n=3 Tax=Oceanibaculum TaxID=659693 RepID=K2K954_9PROT) HSP 1 Score: 91.7 bits (226), Expect = 4.530e-21 Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
M FF AF A AL+A D++ L+IV LSL VSLSAVAIA LIG PLGAAVAL++FPGRG V ++LN MGLPPVV
Sbjct: 1 MFEFFSAFKTAFALIAGFDSELLQIVALSLSVSLSAVAIAALIGLPLGAAVALWRFPGRGAVIVVLNACMGLPPVV 76
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: A0A2R8BK67_9RHOB (Tungstate uptake system permease protein TupB n=1 Tax=Defluviimonas aquaemixtae TaxID=1542388 RepID=A0A2R8BK67_9RHOB) HSP 1 Score: 91.3 bits (225), Expect = 6.510e-21 Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
MD+F+ +A L+A+ D D LEI+GLSLRV+L+AVA AC+IG PLGAAV ++FPGR VVS++LN+ MGLPPVV
Sbjct: 1 MDSFWALLGDAVDLIAAGDRDLLEIIGLSLRVTLTAVAAACMIGLPLGAAVGAFRFPGRTVVSIVLNSLMGLPPVV 76
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Match: UPI0012BCD663 (ABC transporter permease n=1 Tax=Roseibium denhamense TaxID=76305 RepID=UPI0012BCD663) HSP 1 Score: 90.9 bits (224), Expect = 9.160e-21 Identity = 45/76 (59.21%), Postives = 63/76 (82.89%), Query Frame = 1
Query: 1 MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAVALYKFPGRGVVSLLLNTFMGLPPVV 228
MD+F+ A EA L+ +LD+D LEI+GLS++V+++AV+IACLIG P+GAAVA ++FPGR +++LLN MGLPPVV
Sbjct: 1 MDSFWSALLEALHLVITLDSDLLEIIGLSMQVTITAVSIACLIGLPIGAAVAAFRFPGRTFLAVLLNAMMGLPPVV 76 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102283.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig102283.2.1 >prot_L-digitata_M_contig102283.2.1 ID=prot_L-digitata_M_contig102283.2.1|Name=mRNA_L-digitata_M_contig102283.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=76bp MDTFFHAFAEAGALLASLDADFLEIVGLSLRVSLSAVAIACLIGFPLGAAback to top mRNA from alignment at L-digitata_M_contig102283:687..914+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig102283.2.1 ID=mRNA_L-digitata_M_contig102283.2.1|Name=mRNA_L-digitata_M_contig102283.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=228bp|location=Sequence derived from alignment at L-digitata_M_contig102283:687..914+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig102283:687..914+ >mRNA_L-digitata_M_contig102283.2.1 ID=mRNA_L-digitata_M_contig102283.2.1|Name=mRNA_L-digitata_M_contig102283.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=228bp|location=Sequence derived from alignment at L-digitata_M_contig102283:687..914+ (Laminaria digitata LdigPH10_18mv male)back to top |