mRNA_L-digitata_M_contig102283.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102283.1.1
Unique NamemRNA_L-digitata_M_contig102283.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: A0A2E7PJP5_9PROT (Sulfur carrier protein FdhD n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PJP5_9PROT)

HSP 1 Score: 275 bits (702), Expect = 8.420e-91
Identity = 139/159 (87.42%), Postives = 144/159 (90.57%), Query Frame = 1
Query:   10 LIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            + PNPDDP LTEPV GIDQDGN + +RVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDD ITGIDHDDDLGVVVVRTDR TDYE RLKKKTLTSGCAQGTVFGDL+ES EG+ LN DA L TS LYALTKAINTMPSLYL AGAIHG
Sbjct:    7 IRPNPDDPSLTEPVCGIDQDGNPISARVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDEITGIDHDDDLGVVVVRTDRETDYEARLKKKTLTSGCAQGTVFGDLIESLEGMVLNPDAELRTSWLYALTKAINTMPSLYLAAGAIHG 165          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: A0A2E8XSP0_9PROT (Sulfurtransferase FdhD (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XSP0_9PROT)

HSP 1 Score: 263 bits (672), Expect = 3.340e-87
Identity = 134/159 (84.28%), Postives = 143/159 (89.94%), Query Frame = 1
Query:   10 LIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            L P+PDDPRLTEPV+GIDQ+GN V++RVVVERPLTLFLNGQEIVTMMTIGD+P+YLAVGYLANQNMLLP+D ITGIDHDDDL VVVVRT+R TDYE RLKKKTLTSGCAQGTVFGDLMES EGV L  DA L TS LY LTKAINT PSLYL AGAIHG
Sbjct:    7 LHPDPDDPRLTEPVTGIDQNGNPVDARVVVERPLTLFLNGQEIVTMMTIGDHPEYLAVGYLANQNMLLPEDRITGIDHDDDLDVVVVRTERQTDYETRLKKKTLTSGCAQGTVFGDLMESLEGVTLKPDAELRTSWLYELTKAINTTPSLYLAAGAIHG 165          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: A0A2E7I5U7_9PROT (Sulfur carrier protein FdhD n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I5U7_9PROT)

HSP 1 Score: 264 bits (675), Expect = 9.330e-87
Identity = 133/160 (83.12%), Postives = 141/160 (88.12%), Query Frame = 1
Query:    7 SLIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            S+ P+PDDPRLTE + G DQDGN +++RVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNML+PDD ITGIDHDDDL VVVVRT+R TDYE RLKKKTLTSGCAQGTVFGDLMES EG  L  DA L TS LY LTKAINTMPSLYL AGAIHG
Sbjct:    6 SIHPDPDDPRLTERIRGFDQDGNPIDTRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLMPDDEITGIDHDDDLAVVVVRTERQTDYEARLKKKTLTSGCAQGTVFGDLMESLEGAVLKPDAELRTSWLYKLTKAINTMPSLYLAAGAIHG 165          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: A0A848WAY0_9PROT (Sulfur carrier protein FdhD n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WAY0_9PROT)

HSP 1 Score: 250 bits (638), Expect = 7.510e-81
Identity = 128/157 (81.53%), Postives = 138/157 (87.90%), Query Frame = 1
Query:   16 PNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            PNPDDPRLTE V+GID+ G  V++ VVVERPLTLFLNGQEIVTMMT+GDYP+YLAVGYLANQNMLLPDD I  ++HDDDL VVVVRT R T+YE +L KKTLTSGCAQGTVFGDLMESFE V LN DARL TS LYALTK INTMPSLYLTAGAIHG
Sbjct:    8 PNPDDPRLTERVTGIDERGGKVDASVVVERPLTLFLNGQEIVTMMTVGDYPEYLAVGYLANQNMLLPDDEIIEVEHDDDLEVVVVRTARQTNYEAKLAKKTLTSGCAQGTVFGDLMESFEDVSLNRDARLKTSWLYALTKQINTMPSLYLTAGAIHG 164          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: UPI0019DCE819 (Formate dehydrogenase accessory sulfurtransferase FdhD n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019DCE819)

HSP 1 Score: 236 bits (601), Expect = 2.040e-75
Identity = 118/157 (75.16%), Postives = 133/157 (84.71%), Query Frame = 1
Query:   16 PNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            P+P+D RLT+ VSGID DG  +E+RVVVERPLTLFLNGQEIVTMMTIGD+PDYL VGYL NQNMLLPDD +T +++DDD+  VVVRT R TD+EE+LKKKTLTSGCAQGT+FGDLME FE V L  D  L TS LY+LTK INT PSLYLTAGAIHG
Sbjct:    8 PDPEDARLTQAVSGIDHDGQPIETRVVVERPLTLFLNGQEIVTMMTIGDHPDYLGVGYLINQNMLLPDDEVTAVEYDDDIETVVVRTKRKTDFEEKLKKKTLTSGCAQGTIFGDLMERFEDVRLPQDVILKTSWLYSLTKKINTAPSLYLTAGAIHG 164          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: A0A838XHT2_9HYPH (Sulfur carrier protein FdhD n=2 Tax=Stappia TaxID=152161 RepID=A0A838XHT2_9HYPH)

HSP 1 Score: 236 bits (601), Expect = 2.950e-75
Identity = 117/159 (73.58%), Postives = 135/159 (84.91%), Query Frame = 1
Query:   10 LIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            + P+PDDPRL++PV+G+DQDG  V+ RVV ER LTLFLN QE+VTMMTIGD PD LAVGYL NQNML PDD +TGID+D+DL VVVVRT+R TDYEE++KKK  TSGCAQGTVFGD+ME F+ + L+ DARLHTS LYALTK INT PSLYL AGAIHG
Sbjct:   16 IRPDPDDPRLSQPVTGLDQDGKPVDLRVVSERALTLFLNAQEVVTMMTIGDRPDLLAVGYLLNQNMLRPDDVLTGIDYDEDLEVVVVRTERATDYEEKMKKKVRTSGCAQGTVFGDVMERFDEIALDPDARLHTSWLYALTKKINTQPSLYLAAGAIHG 174          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: UPI000E5C8CBF (formate dehydrogenase accessory sulfurtransferase FdhD n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI000E5C8CBF)

HSP 1 Score: 235 bits (600), Expect = 4.180e-75
Identity = 118/159 (74.21%), Postives = 134/159 (84.28%), Query Frame = 1
Query:   10 LIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            L P+PDDPRLT+ V GID+ G  +E+RVV+ERPLTLFLNGQEIVTMMTIGDYPDYLAVGYL NQNML  DD I GID+D++L VVVVRT R T+YEE+LKKK  TSGCAQGTVFGDLME F+ + LN +ARL TS LYALT+ IN  PSLYLT+GAIHG
Sbjct:    8 LRPDPDDPRLTQAVRGIDETGQAIETRVVIERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLLNQNMLRADDEIAGIDYDEELEVVVVRTARATNYEEKLKKKIRTSGCAQGTVFGDLMEKFDDIRLNPEARLKTSDLYALTRKINGAPSLYLTSGAIHG 166          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: A0A2U1WSV2_9PROT (Sulfur carrier protein FdhD n=1 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1WSV2_9PROT)

HSP 1 Score: 234 bits (598), Expect = 5.980e-75
Identity = 116/160 (72.50%), Postives = 135/160 (84.38%), Query Frame = 1
Query:    7 SLIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            ++ P+P DP+LTE VSG+DQDG+ +E+ V VERPLTLFLNGQE+VTMMTI DYP+YL VGYL NQNML PDDTITGID+D++  VVVVRT+R TDY+E+LKKKTLTSGCAQGT FGD+ME FE V LN D RL TS +YAL+K IN  PSLYL AGAIHG
Sbjct:    7 TIRPDPADPKLTERVSGLDQDGHAIETSVTVERPLTLFLNGQEVVTMMTIADYPEYLGVGYLLNQNMLKPDDTITGIDYDEETDVVVVRTERRTDYQEKLKKKTLTSGCAQGTAFGDVMEVFETVTLNPDVRLRTSWIYALSKKINLTPSLYLEAGAIHG 166          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: A0A848Z9Q2_9PROT (Sulfur carrier protein FdhD n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848Z9Q2_9PROT)

HSP 1 Score: 234 bits (596), Expect = 1.200e-74
Identity = 117/159 (73.58%), Postives = 133/159 (83.65%), Query Frame = 1
Query:   10 LIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            + P+PDDPRLTE V G+DQ+G  VE+ V VERPLTLFLNG+EIVTMMTI D+PDYLA+GYL NQNML PDD +T ID+DDD+  VVVRT+R TDYEE+LKKKTLTSGCAQGTVFGD+MESFE V L   ARLHTS LY L++ IN  PSLYL AGAIHG
Sbjct:    6 IRPDPDDPRLTERVRGVDQEGRPVETSVTVERPLTLFLNGREIVTMMTIADHPDYLALGYLLNQNMLRPDDRVTAIDYDDDIETVVVRTERVTDYEEKLKKKTLTSGCAQGTVFGDVMESFEQVRLPKAARLHTSWLYTLSRKINQSPSLYLAAGAIHG 164          
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Match: UPI00187223CE (formate dehydrogenase accessory sulfurtransferase FdhD n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI00187223CE)

HSP 1 Score: 234 bits (598), Expect = 1.290e-74
Identity = 122/159 (76.73%), Postives = 132/159 (83.02%), Query Frame = 1
Query:   10 LIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEERLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTMPSLYLTAGAIHG 486
            L P+PDDPRLTE V G+DQDG  VE+ VVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYL NQNML PDD I GID+D++L VVVVRT+R TDYEE+LKKK  TSGCAQGTVFGDLME FE V L  DA L TS L +L+K IN  PSLYL AGAIHG
Sbjct:   31 LRPDPDDPRLTERVEGVDQDGKAVETAVVVERPLTLFLNGQEIVTMMTIGDYPDYLAVGYLLNQNMLRPDDVIEGIDYDEELEVVVVRTERETDYEEKLKKKVRTSGCAQGTVFGDLMEKFETVMLPQDAVLKTSWLVSLSKKINAAPSLYLEAGAIHG 189          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102283.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PJP5_9PROT8.420e-9187.42Sulfur carrier protein FdhD n=1 Tax=Rhodospirillac... [more]
A0A2E8XSP0_9PROT3.340e-8784.28Sulfurtransferase FdhD (Fragment) n=1 Tax=Alphapro... [more]
A0A2E7I5U7_9PROT9.330e-8783.13Sulfur carrier protein FdhD n=2 Tax=Alphaproteobac... [more]
A0A848WAY0_9PROT7.510e-8181.53Sulfur carrier protein FdhD n=1 Tax=Alphaproteobac... [more]
UPI0019DCE8192.040e-7575.16Formate dehydrogenase accessory sulfurtransferase ... [more]
A0A838XHT2_9HYPH2.950e-7573.58Sulfur carrier protein FdhD n=2 Tax=Stappia TaxID=... [more]
UPI000E5C8CBF4.180e-7574.21formate dehydrogenase accessory sulfurtransferase ... [more]
A0A2U1WSV2_9PROT5.980e-7572.50Sulfur carrier protein FdhD n=1 Tax=Azospirillum s... [more]
A0A848Z9Q2_9PROT1.200e-7473.58Sulfur carrier protein FdhD n=1 Tax=Inquilinus sp.... [more]
UPI00187223CE1.290e-7476.73formate dehydrogenase accessory sulfurtransferase ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102283contigL-digitata_M_contig102283:2..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog384765.SIAM614_12233
Preferred namefdhD
PFAMsFdhD-NarQ
Model size486
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02379
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.33e-74
EggNOG OGsCOG1526@1|root,COG1526@2|Bacteria,1MY28@1224|Proteobacteria,2VFYH@28211|Alphaproteobacteria
DescriptionRequired for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
Cds size486
COG categoryC
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406628.1064527-CDS-L-digitata_M_contig102283:1..4871682406628.1064527-CDS-L-digitata_M_contig102283:1..487Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102283 2..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102283.1.1prot_L-digitata_M_contig102283.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102283 2..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102283.1.1

>prot_L-digitata_M_contig102283.1.1 ID=prot_L-digitata_M_contig102283.1.1|Name=mRNA_L-digitata_M_contig102283.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=162bp
MSSLIPNPDDPRLTEPVSGIDQDGNTVESRVVVERPLTLFLNGQEIVTMM
TIGDYPDYLAVGYLANQNMLLPDDTITGIDHDDDLGVVVVRTDRTTDYEE
RLKKKTLTSGCAQGTVFGDLMESFEGVELNTDARLHTSSLYALTKAINTM
PSLYLTAGAIHG
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mRNA from alignment at L-digitata_M_contig102283:2..487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102283.1.1 ID=mRNA_L-digitata_M_contig102283.1.1|Name=mRNA_L-digitata_M_contig102283.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=486bp|location=Sequence derived from alignment at L-digitata_M_contig102283:2..487- (Laminaria digitata LdigPH10_18mv male)
ATGTCATCTCTCATCCCGAACCCCGATGACCCGCGCCTGACCGAGCCTGT CTCGGGCATTGATCAGGACGGCAACACGGTTGAATCCCGCGTCGTGGTGG AACGCCCGCTGACCCTGTTCCTGAACGGCCAGGAGATCGTCACCATGATG ACCATCGGGGATTACCCGGACTATCTGGCGGTCGGGTATCTCGCCAATCA GAACATGCTGCTGCCCGACGACACGATCACCGGCATCGACCATGACGATG ATCTGGGTGTTGTGGTGGTGCGCACGGATCGCACCACCGATTACGAGGAA CGCCTGAAGAAGAAGACGCTGACGAGCGGCTGCGCTCAGGGCACGGTCTT CGGTGATCTGATGGAAAGCTTCGAAGGGGTTGAACTCAACACGGATGCCC GCCTGCACACGTCATCGCTCTACGCGCTGACCAAGGCCATCAACACCATG CCGAGCCTGTATCTCACGGCCGGCGCGATCCATGGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig102283:2..487-

>mRNA_L-digitata_M_contig102283.1.1 ID=mRNA_L-digitata_M_contig102283.1.1|Name=mRNA_L-digitata_M_contig102283.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=486bp|location=Sequence derived from alignment at L-digitata_M_contig102283:2..487- (Laminaria digitata LdigPH10_18mv male)
ATGTCATCTCTCATCCCGAACCCCGATGACCCGCGCCTGACCGAGCCTGT
CTCGGGCATTGATCAGGACGGCAACACGGTTGAATCCCGCGTCGTGGTGG
AACGCCCGCTGACCCTGTTCCTGAACGGCCAGGAGATCGTCACCATGATG
ACCATCGGGGATTACCCGGACTATCTGGCGGTCGGGTATCTCGCCAATCA
GAACATGCTGCTGCCCGACGACACGATCACCGGCATCGACCATGACGATG
ATCTGGGTGTTGTGGTGGTGCGCACGGATCGCACCACCGATTACGAGGAA
CGCCTGAAGAAGAAGACGCTGACGAGCGGCTGCGCTCAGGGCACGGTCTT
CGGTGATCTGATGGAAAGCTTCGAAGGGGTTGAACTCAACACGGATGCCC
GCCTGCACACGTCATCGCTCTACGCGCTGACCAAGGCCATCAACACCATG
CCGAGCCTGTATCTCACGGCCGGCGCGATCCATGGT
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