mRNA_L-digitata_M_contig102276.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102276.1.1
Unique NamemRNA_L-digitata_M_contig102276.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A2D5ENI4_9DELT (B12-binding domain-containing radical SAM protein n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5ENI4_9DELT)

HSP 1 Score: 361 bits (926), Expect = 5.380e-115
Identity = 178/264 (67.42%), Postives = 204/264 (77.27%), Query Frame = 1
Query:   10 RLHPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVD---AAIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            R HPYA FL +V  P QY+GGE GE RKDW A   R+CLAFPDLYEIGMSHLG KILY ++N    LLAER YA W D+E KLREHGE +RSLES R L+DFDV+GFSLQ ELTYT IL MLDLGG+P  S +RG+D PLVIAGGPVATHAEP+  F+DA LIGDGE KL EL+ TWA LRDAG+PRRERL  +A+LGGW VPSLY R +D  TGF+VV    A   +AP PV+R IV+DL  +PFP D PVA+ ET+FDRVSV
Sbjct:   11 RDHPYAPFLHEVRTPAQYIGGEHGEKRKDWGAAAARMCLAFPDLYEIGMSHLGYKILYGILNRHPKLLAERSYAVWEDMEQKLREHGEPLRSLESARPLSDFDVVGFSLQYELTYTNILQMLDLGGIPRWSEERGDDDPLVIAGGPVATHAEPLGPFVDAFLIGDGEQKLPELLLTWATLRDAGMPRRERLVEIAKLGGWMVPSLYERGLDEDTGFIVVKGPKAEHPEAPYPVERAIVRDLSAFPFPADGPVAATETIFDRVSV 274          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A356TCG8_9DELT (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A356TCG8_9DELT)

HSP 1 Score: 342 bits (877), Expect = 5.070e-108
Identity = 162/260 (62.31%), Postives = 206/260 (79.23%), Query Frame = 1
Query:   16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDA-AIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            HPYA FL++V+KP +Y+GGE GE RKDW  V+ R+CLAFPD+Y+IGMSHLG KILY ++NG + LLAER YAPW D+EA+LRE GE +RSLES RAL++FD +GFSLQ ELT+T ILTML+LGG+ L SADR +DAPL++AGGP ATHAEP+A F+DA++IGDGE K  E++ TW+ L+ AG+PRRERL  +A+LGG YVPSLY   ++  TG  VV A +  + P P++R +V DL  +PFP   PVAS ET+FDRVSV
Sbjct:    4 HPYADFLEKVQKPSRYVGGEHGEVRKDWDGVQARMCLAFPDIYDIGMSHLGFKILYSILNGHEKLLAERCYAPWVDMEAQLRERGEPLRSLESWRALSEFDAVGFSLQFELTFTNILTMLELGGIALRSADRDDDAPLILAGGPTATHAEPIAPFLDALVIGDGEEKTPEILLTWSALKAAGMPRRERLVELAKLGGVYVPSLYETELEAETGMQVVRAPSAPELPFPIERAMVDDLNAHPFPHGGPVASTETIFDRVSV 263          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A2D9TBA7_9DELT (B12-binding domain-containing radical SAM protein n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9TBA7_9DELT)

HSP 1 Score: 338 bits (867), Expect = 1.850e-106
Identity = 166/261 (63.60%), Postives = 199/261 (76.25%), Query Frame = 1
Query:   16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIG--DAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            HPYAAFL++V KP QYLGGE G+ RKDW +V  R+CLAFPDLYEIGMSHLG KILY +VN    LLAER YA W D+EA+LREHGE +RSLE+ R L DFD++GFSLQ ELTYT IL ML+LGG+PL +ADR ++ PLV+ GGPVATHAEP+A F+D +L+GDGE K+ ELM TWA LRDAG+PR ERL  +ARLGG+YVPSLY R        +V+       DAP PV+R  V+DL  + FP   PVA+ ET+FDRVSV
Sbjct:    9 HPYAAFLERVRKPAQYLGGEDGQVRKDWDSVSCRMCLAFPDLYEIGMSHLGYKILYGIVNAHPKLLAERSYAVWPDMEAQLREHGETLRSLENARPLRDFDIVGFSLQFELTYTNILQMLELGGIPLRAADRTDEDPLVVCGGPVATHAEPLAPFVDVLLVGDGEEKVPELMLTWAALRDAGMPRVERLRHIARLGGFYVPSLYARERAADRDVLVLSGPKDGEDAPFPVQRAFVRDLKKFDFPAVGPVAATETIFDRVSV 269          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A7Y2BH92_9DELT (TIGR03960 family B12-binding radical SAM protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2BH92_9DELT)

HSP 1 Score: 325 bits (833), Expect = 1.320e-105
Identity = 159/259 (61.39%), Postives = 190/259 (73.36%), Query Frame = 1
Query:   16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            HPYA F+ +V KP QYLGGE G T K W     R+CLAFPDLYEIGMSHLG KILY +VN + +LLAER YA W D+E +LR HG+ + SLES R L DFD++GFSLQ ELTYT IL MLDLG VPL +  R ++ PL++AGGP ATHAEPMA FIDA LIGDGE KL ELM+ WA +   G+PR ERL  VA+LGG+YVPSLY       T   VV+ A  +AP P++R IV+DL DYPFP D P+A+ +TVFDR S+
Sbjct:    4 HPYAPFIDRVHKPAQYLGGEQGITHKPWDEASCRVCLAFPDLYEIGMSHLGYKILYDIVNRRPELLAERAYAVWGDMEQELRAHGQALCSLESARPLCDFDIVGFSLQYELTYTNILQMLDLGRVPLRADARKDEDPLIVAGGPTATHAEPMAPFIDAFLIGDGEAKLPELMHAWAAMTRDGLPRAERLLRVAKLGGFYVPSLYESVPIEETKAQVVEPAHPEAPYPIRRSIVEDLNDYPFPVDGPIANCQTVFDRASI 262          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A150U185_SORCE (Radical SAM protein (Fragment) n=4 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150U185_SORCE)

HSP 1 Score: 327 bits (837), Expect = 2.080e-104
Identity = 161/260 (61.92%), Postives = 193/260 (74.23%), Query Frame = 1
Query:   16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDA-PLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            HPYA+FL QVEKP +Y GGE G   KDW +V  R+CLAFPD+Y+IGMSHLG KILY+L+N     LAER YAPW D+EA+L + G  + SLES R L DFDV+GFSLQ ELTY+ ILTML LGGVPL + DRGED P+VIAGGP ATH EP+A F+DA++IGDGE K TE+  TW  L+  GVPRRERL A+ARLG  YVPSLY   +DP TGF+VVD  + D  P PV R +V DL  YPFP ++P    E +FDR+S+
Sbjct:   10 HPYASFLDQVEKPARYAGGEVGSVVKDWASVEARVCLAFPDVYDIGMSHLGFKILYKLLNDDPRTLAERCYAPWVDMEAQLVKRGLPLVSLESARPLRDFDVVGFSLQFELTYSNILTMLHLGGVPLRAEDRGEDDPIVIAGGPTATHPEPIAPFLDALVIGDGEEKATEVALTWTRLKREGVPRRERLIAIARLGAVYVPSLYATRLDPDTGFVVVDRPLVDGIPFPVDRALV-DLNQYPFPDESPTGGPEAIFDRMSI 268          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A7C5N160_9DELT (TIGR03960 family B12-binding radical SAM protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5N160_9DELT)

HSP 1 Score: 330 bits (846), Expect = 2.000e-103
Identity = 158/260 (60.77%), Postives = 199/260 (76.54%), Query Frame = 1
Query:   16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVD-AAIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            HPYA+FL +V+KP +Y+GGE GE  K W  VR R+CLAFPD+Y+IGMSHLG KILY ++N  D LLAER Y PW D+E +LRE  E +RSLES RAL++FDV+GFSLQ ELT++ +LTMLDLGG+ L S  R ++APL+IAGGP ATHAEP+A FIDA +IGDGE K  E++ TW  L+DAGVPRR RL  +A+LGG YVPSL+   ++ ATG  VV+ +A+     P++R +V DL  YPFP D PV+S ET+FDRVSV
Sbjct:    5 HPYASFLDRVQKPSRYVGGEHGEVIKPWDDVRARMCLAFPDIYDIGMSHLGFKILYSIINKHDKLLAERAYTPWVDMEQELRERREPLRSLESARALSEFDVVGFSLQFELTFSNVLTMLDLGGIALRSEQRDDEAPLIIAGGPTATHAEPLAPFIDAFVIGDGEAKTPEILLTWTALKDAGVPRRARLTELAKLGGVYVPSLHETRLEEATGMHVVEPSAVEGLAFPIERAMVGDLNQYPFPHDGPVSSTETIFDRVSV 264          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A520YHQ5_9DELT (TIGR03960 family B12-binding radical SAM protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A520YHQ5_9DELT)

HSP 1 Score: 326 bits (836), Expect = 4.860e-102
Identity = 161/261 (61.69%), Postives = 190/261 (72.80%), Query Frame = 1
Query:   10 RLHPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            R HPYA+F+ +V KP QYLGGE G  RK W     R+CLAFPDLYEIGMSHLG KILY +VN + DLLAER YA W D+E +LR H E + SLES R +  FD++GFSLQ ELTYT IL MLDLGG+PL + +R  + PLVIAGGP ATHAEPMA FIDA LIGDGE KL ELM+ WAD++  G+PR ERL  +A+LGG+YVPSLY       T   VV     +AP PV+R IV DL DYPFP D P+A+ +TVFDR S+
Sbjct:    2 RDHPYASFIDRVHKPAQYLGGEQGIARKVWDEASCRICLAFPDLYEIGMSHLGFKILYDIVNRRPDLLAERAYAVWDDMERELRSHDEALCSLESARPIRAFDIVGFSLQYELTYTNILQMLDLGGIPLRTDERTGEDPLVIAGGPTATHAEPMAPFIDAFLIGDGEAKLPELMDAWADMKQLGLPRAERLLHIAKLGGFYVPSLYKSVQSEDTKVHVVAPNHPEAPYPVQRAIVDDLNDYPFPVDGPIANCQTVFDRASI 262          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A0K1ESM4_CHOCO (B12-binding protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ESM4_CHOCO)

HSP 1 Score: 327 bits (838), Expect = 1.540e-101
Identity = 162/260 (62.31%), Postives = 194/260 (74.62%), Query Frame = 1
Query:   16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDA-AIGDAPLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            HPYAAFL QV+KP +Y GGE G   KDW +V  R+CLAFPD+Y+IGMSHLG KILY+++N     LAER YAPW D+EA+L   G  + +LES R L DFDV+GFSLQ ELTY+ ILTML LGG+PL +ADR ED PLVIAGGPVATH EP+A F+D ++IGDGE K TE+  TWA L+ AGVPR+ERL A+A+LG  YVPSLY   +DP TG  VVD   + DAPLPV R +V DL  YPFP DAP    E +FDR+S+
Sbjct:   10 HPYAAFLDQVDKPARYTGGEVGSIVKDWSSVEARVCLAFPDVYDIGMSHLGFKILYKILNDDPRTLAERCYAPWVDMEAQLVRRGLPLVALESARPLRDFDVVGFSLQFELTYSNILTMLKLGGIPLRAADREEDDPLVIAGGPVATHPEPIAPFLDLLVIGDGEEKATEVSLTWARLKKAGVPRKERLVALAKLGAVYVPSLYETRLDPDTGLHVVDRPVVPDAPLPVGRALV-DLNQYPFPDDAPTGGPEAIFDRMSI 268          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A0A4P2Q771_SORCE (B12-binding protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4P2Q771_SORCE)

HSP 1 Score: 326 bits (836), Expect = 2.480e-101
Identity = 161/260 (61.92%), Postives = 193/260 (74.23%), Query Frame = 1
Query:   16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDA-PLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            HPYA+FL QVEKP +Y GGE G   KDW AV  R+CLAFPD+Y+IGMSHLG KILY+L+N     LAER YAPW D+EA+L + G  + SLES R L DFDV+GFSLQ ELTY+ ILTML LGGVPL +ADRGED PLVIAGGP ATH EP+A F+DA++IGDGE K +E+  TWA L+  G PRRERL A+ARLG  YVPSLY   +DP TG  VVD  + D  P P++R +V DL  YPFP ++P    E +FDR+S+
Sbjct:   10 HPYASFLDQVEKPARYAGGEVGSVVKDWSAVEARVCLAFPDVYDIGMSHLGFKILYKLLNDDPRTLAERCYAPWVDMEAELVKRGLPLVSLESARPLRDFDVVGFSLQFELTYSNILTMLHLGGVPLRAADRGEDDPLVIAGGPTATHPEPIAPFLDALVIGDGEAKASEVALTWARLKREGAPRRERLLAIARLGAVYVPSLYATRLDPDTGLEVVDRPLADGIPFPIERALV-DLDQYPFPDESPTGGPEAIFDRMSI 268          
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Match: A9GP03_SORC5 (Radical SAM core domain-containing protein n=4 Tax=Sorangium cellulosum TaxID=56 RepID=A9GP03_SORC5)

HSP 1 Score: 325 bits (834), Expect = 4.840e-101
Identity = 160/260 (61.54%), Postives = 193/260 (74.23%), Query Frame = 1
Query:   16 HPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEIGMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGRALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPVATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARLGGWYVPSLYTRAVDPATGFMVVDAAIGDA-PLPVKRHIVQDLGDYPFPTDAPVASIETVFDRVSV 792
            HPYA+FL QVEKP +Y GGE G   KDW +V  R+CLAFPD+Y+IGMSHLG KILY+L+N     LAER Y PW D+EA+L + G  + SLES R L DFDV+GFSLQ ELTY+ ILTML LGGVPL +ADRGED P+VIAGGP ATH EP+A F+DA++IGDGE K TE+   WA L+  GVPRRERLAA+ARLG  YVPSLY   +DP TGF VVD  +    P P++R +V DL  YPFP ++P    E +FDR+S+
Sbjct:   23 HPYASFLDQVEKPARYAGGEVGSVVKDWASVEARVCLAFPDVYDIGMSHLGFKILYKLLNDDPRTLAERCYTPWVDMEAQLVKRGLPLVSLESARPLRDFDVVGFSLQFELTYSNILTMLHLGGVPLRAADRGEDDPIVIAGGPTATHPEPIAPFLDAIVIGDGEEKATEVALAWARLKREGVPRRERLAAIARLGAVYVPSLYATRLDPDTGFEVVDRPLASGIPFPIERALV-DLNRYPFPDESPTGGPEAIFDRMSI 281          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102276.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5ENI4_9DELT5.380e-11567.42B12-binding domain-containing radical SAM protein ... [more]
A0A356TCG8_9DELT5.070e-10862.31TIGR03960 family B12-binding radical SAM protein n... [more]
A0A2D9TBA7_9DELT1.850e-10663.60B12-binding domain-containing radical SAM protein ... [more]
A0A7Y2BH92_9DELT1.320e-10561.39TIGR03960 family B12-binding radical SAM protein (... [more]
A0A150U185_SORCE2.080e-10461.92Radical SAM protein (Fragment) n=4 Tax=Sorangium c... [more]
A0A7C5N160_9DELT2.000e-10360.77TIGR03960 family B12-binding radical SAM protein n... [more]
A0A520YHQ5_9DELT4.860e-10261.69TIGR03960 family B12-binding radical SAM protein n... [more]
A0A0K1ESM4_CHOCO1.540e-10162.31B12-binding protein n=1 Tax=Chondromyces crocatus ... [more]
A0A4P2Q771_SORCE2.480e-10161.92B12-binding protein n=1 Tax=Sorangium cellulosum T... [more]
A9GP03_SORC54.840e-10161.54Radical SAM core domain-containing protein n=4 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102276contigL-digitata_M_contig102276:123..914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1254432.SCE1572_38620
PFAMsDUF2344,Radical_SAM
Model size792
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.46e-102
EggNOG OGsCOG1032@1|root,COG5011@1|root,COG1032@2|Bacteria,COG5011@2|Bacteria,1MV5G@1224|Proteobacteria,42MPT@68525|delta/epsilon subdivisions,2WJG9@28221|Deltaproteobacteria,2YUJ4@29|Myxococcales
DescriptionSMART Elongator protein 3 MiaB NifB
Cds size792
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.9841042-CDS-L-digitata_M_contig102276:122..9141682406627.9841042-CDS-L-digitata_M_contig102276:122..914Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102276 123..914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102276.1.1prot_L-digitata_M_contig102276.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102276 123..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102276.1.1

>prot_L-digitata_M_contig102276.1.1 ID=prot_L-digitata_M_contig102276.1.1|Name=mRNA_L-digitata_M_contig102276.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=264bp
MEHRLHPYAAFLKQVEKPVQYLGGEPGETRKDWHAVRGRLCLAFPDLYEI
GMSHLGLKILYRLVNGQDDLLAERVYAPWTDLEAKLREHGEKVRSLESGR
ALADFDVLGFSLQSELTYTTILTMLDLGGVPLLSADRGEDAPLVIAGGPV
ATHAEPMADFIDAMLIGDGEHKLTELMNTWADLRDAGVPRRERLAAVARL
GGWYVPSLYTRAVDPATGFMVVDAAIGDAPLPVKRHIVQDLGDYPFPTDA
PVASIETVFDRVSV
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mRNA from alignment at L-digitata_M_contig102276:123..914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102276.1.1 ID=mRNA_L-digitata_M_contig102276.1.1|Name=mRNA_L-digitata_M_contig102276.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=792bp|location=Sequence derived from alignment at L-digitata_M_contig102276:123..914+ (Laminaria digitata LdigPH10_18mv male)
ATGGAGCATCGCCTGCACCCCTACGCCGCCTTCCTCAAACAAGTGGAAAA GCCCGTGCAATACCTGGGGGGGGAACCCGGCGAGACCCGCAAAGACTGGC ACGCGGTGCGCGGCCGCCTCTGCCTCGCGTTCCCAGATCTGTACGAGATC GGCATGAGCCACCTCGGGCTCAAGATCCTGTACCGCCTGGTCAACGGGCA AGATGACTTGCTGGCCGAGCGAGTCTACGCGCCCTGGACCGATCTGGAAG CGAAGCTGCGCGAACACGGCGAGAAGGTCCGGTCCTTGGAGAGCGGCCGA GCCCTGGCCGACTTCGACGTCTTGGGGTTCTCTCTGCAGTCCGAGCTGAC CTATACGACCATCCTGACCATGCTCGACTTGGGCGGCGTGCCCTTGCTGA GCGCGGACCGCGGCGAAGACGCGCCCCTCGTGATCGCGGGCGGGCCCGTG GCCACCCACGCCGAGCCCATGGCGGACTTCATCGACGCCATGCTCATCGG CGACGGCGAGCACAAGCTCACGGAGCTGATGAACACCTGGGCAGATCTTC GAGACGCGGGCGTGCCGCGACGTGAGCGCCTCGCGGCCGTGGCCCGCCTG GGCGGCTGGTACGTGCCCAGCCTGTACACCCGCGCCGTGGATCCCGCGAC GGGCTTCATGGTGGTCGATGCGGCGATCGGCGACGCCCCCCTGCCCGTGA AGCGCCACATCGTGCAGGACCTGGGAGACTACCCCTTCCCCACCGACGCG CCGGTGGCCTCCATCGAGACCGTCTTTGATCGTGTGAGCGTT
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Coding sequence (CDS) from alignment at L-digitata_M_contig102276:123..914+

>mRNA_L-digitata_M_contig102276.1.1 ID=mRNA_L-digitata_M_contig102276.1.1|Name=mRNA_L-digitata_M_contig102276.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=792bp|location=Sequence derived from alignment at L-digitata_M_contig102276:123..914+ (Laminaria digitata LdigPH10_18mv male)
ATGGAGCATCGCCTGCACCCCTACGCCGCCTTCCTCAAACAAGTGGAAAA
GCCCGTGCAATACCTGGGGGGGGAACCCGGCGAGACCCGCAAAGACTGGC
ACGCGGTGCGCGGCCGCCTCTGCCTCGCGTTCCCAGATCTGTACGAGATC
GGCATGAGCCACCTCGGGCTCAAGATCCTGTACCGCCTGGTCAACGGGCA
AGATGACTTGCTGGCCGAGCGAGTCTACGCGCCCTGGACCGATCTGGAAG
CGAAGCTGCGCGAACACGGCGAGAAGGTCCGGTCCTTGGAGAGCGGCCGA
GCCCTGGCCGACTTCGACGTCTTGGGGTTCTCTCTGCAGTCCGAGCTGAC
CTATACGACCATCCTGACCATGCTCGACTTGGGCGGCGTGCCCTTGCTGA
GCGCGGACCGCGGCGAAGACGCGCCCCTCGTGATCGCGGGCGGGCCCGTG
GCCACCCACGCCGAGCCCATGGCGGACTTCATCGACGCCATGCTCATCGG
CGACGGCGAGCACAAGCTCACGGAGCTGATGAACACCTGGGCAGATCTTC
GAGACGCGGGCGTGCCGCGACGTGAGCGCCTCGCGGCCGTGGCCCGCCTG
GGCGGCTGGTACGTGCCCAGCCTGTACACCCGCGCCGTGGATCCCGCGAC
GGGCTTCATGGTGGTCGATGCGGCGATCGGCGACGCCCCCCTGCCCGTGA
AGCGCCACATCGTGCAGGACCTGGGAGACTACCCCTTCCCCACCGACGCG
CCGGTGGCCTCCATCGAGACCGTCTTTGATCGTGTGAGCGTT
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