mRNA_L-digitata_M_contig102256.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDV 111
YGG+PA+IPG++QAE+FD GGEGV YSD+T GN V
Sbjct: 853 YGGIPAVIPGMVQAEKFDHGGEGVSYSDTTPGNSGGV 889
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDV 111
YGG+PA+IPG++QAE+FD GGEGV YSD+T GN V
Sbjct: 105 YGGIPAVIPGMVQAEKFDHGGEGVSYSDTTPGNSGGV 141
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A2V8E0Z7_9BACT (CBM6 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8E0Z7_9BACT) HSP 1 Score: 53.5 bits (127), Expect = 4.860e-7 Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNV 102
YGG PA +PGI+Q E +DAGGEGV Y D+T GN
Sbjct: 227 YGGTPAALPGIVQFENYDAGGEGVAYHDTTAGNA 260
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A830EKN8_9EURY (Uncharacterized protein n=2 Tax=Haloarcula sebkhae TaxID=932660 RepID=A0A830EKN8_9EURY) HSP 1 Score: 52.8 bits (125), Expect = 9.120e-7 Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDVS 114
Y G PA IPG I+A+ +D GGEG+ YSD+T+GN D S
Sbjct: 271 YNGTPATIPGRIEAQNYDTGGEGIAYSDTTSGNEYDTS 308
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A537LUF1_9BACT (Carbohydrate-binding protein n=2 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537LUF1_9BACT) HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6 Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGN 99
YGG P IPG++QAE FD GGEGV Y D+T GN
Sbjct: 742 YGGAPWAIPGVVQAENFDVGGEGVAYHDTTPGN 774
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A6B0GN19_9EURY (Carbohydrate-binding protein n=1 Tax=Halomarina oriensis TaxID=671145 RepID=A0A6B0GN19_9EURY) HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6 Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNV 102
YGG PA IPG +QAE+FD GGEGV Y+D+T N
Sbjct: 268 YGGTPATIPGTVQAEDFDRGGEGVAYADATDENA 301
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: UPI001878CD44 (DUF5010 C-terminal domain-containing protein n=1 Tax=Haloarcula sp. JP-Z28 TaxID=2716715 RepID=UPI001878CD44) HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6 Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDV 111
Y G PA IPG IQA+ +D GGEG+ YSD+T GN D
Sbjct: 184 YNGTPATIPGRIQAQNYDTGGEGIAYSDTTAGNEYDT 220
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A2M8KYS6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Saccharibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_47_8 TaxID=1974869 RepID=A0A2M8KYS6_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 3.190e-6 Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNV 102
YGG IPG IQAE+FD GGEGV Y D+TTGN
Sbjct: 100 YGGSTRTIPGTIQAEDFDEGGEGVAYHDTTTGNT 133
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: UPI0019A017D9 (PQQ-dependent sugar dehydrogenase n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=UPI0019A017D9) HSP 1 Score: 51.2 bits (121), Expect = 3.200e-6 Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNV 102
YGG+P +PG +QAE++D GGEGV Y D+T GN
Sbjct: 663 YGGIPHPVPGTVQAEDYDLGGEGVAYHDNTNGNA 696
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A4Q5NRN4_9BACT (Carbohydrate-binding protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q5NRN4_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 3.200e-6 Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDV 111
Y GV A+IPGII+AE +D GGEG+ Y D+T GN ++
Sbjct: 854 YKGVKAVIPGIIEAENYDDGGEGIAYHDTTNGNYRNA 890 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig102256.1.1 >prot_L-digitata_M_contig102256.1.1 ID=prot_L-digitata_M_contig102256.1.1|Name=mRNA_L-digitata_M_contig102256.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=45bp YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDVSGNGWLA*back to top mRNA from alignment at L-digitata_M_contig102256:339..473+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig102256.1.1 ID=mRNA_L-digitata_M_contig102256.1.1|Name=mRNA_L-digitata_M_contig102256.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=135bp|location=Sequence derived from alignment at L-digitata_M_contig102256:339..473+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig102256:339..473+ >mRNA_L-digitata_M_contig102256.1.1 ID=mRNA_L-digitata_M_contig102256.1.1|Name=mRNA_L-digitata_M_contig102256.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=135bp|location=Sequence derived from alignment at L-digitata_M_contig102256:339..473+ (Laminaria digitata LdigPH10_18mv male)back to top |