mRNA_L-digitata_M_contig102256.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102256.1.1
Unique NamemRNA_L-digitata_M_contig102256.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDV 111
            YGG+PA+IPG++QAE+FD GGEGV YSD+T GN   V
Sbjct:  853 YGGIPAVIPGMVQAEKFDHGGEGVSYSDTTPGNSGGV 889          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDV 111
            YGG+PA+IPG++QAE+FD GGEGV YSD+T GN   V
Sbjct:  105 YGGIPAVIPGMVQAEKFDHGGEGVSYSDTTPGNSGGV 141          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A2V8E0Z7_9BACT (CBM6 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8E0Z7_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 4.860e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNV 102
            YGG PA +PGI+Q E +DAGGEGV Y D+T GN 
Sbjct:  227 YGGTPAALPGIVQFENYDAGGEGVAYHDTTAGNA 260          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A830EKN8_9EURY (Uncharacterized protein n=2 Tax=Haloarcula sebkhae TaxID=932660 RepID=A0A830EKN8_9EURY)

HSP 1 Score: 52.8 bits (125), Expect = 9.120e-7
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDVS 114
            Y G PA IPG I+A+ +D GGEG+ YSD+T+GN  D S
Sbjct:  271 YNGTPATIPGRIEAQNYDTGGEGIAYSDTTSGNEYDTS 308          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A537LUF1_9BACT (Carbohydrate-binding protein n=2 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537LUF1_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGN 99
            YGG P  IPG++QAE FD GGEGV Y D+T GN
Sbjct:  742 YGGAPWAIPGVVQAENFDVGGEGVAYHDTTPGN 774          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A6B0GN19_9EURY (Carbohydrate-binding protein n=1 Tax=Halomarina oriensis TaxID=671145 RepID=A0A6B0GN19_9EURY)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNV 102
            YGG PA IPG +QAE+FD GGEGV Y+D+T  N 
Sbjct:  268 YGGTPATIPGTVQAEDFDRGGEGVAYADATDENA 301          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: UPI001878CD44 (DUF5010 C-terminal domain-containing protein n=1 Tax=Haloarcula sp. JP-Z28 TaxID=2716715 RepID=UPI001878CD44)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDV 111
            Y G PA IPG IQA+ +D GGEG+ YSD+T GN  D 
Sbjct:  184 YNGTPATIPGRIQAQNYDTGGEGIAYSDTTAGNEYDT 220          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A2M8KYS6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Saccharibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_47_8 TaxID=1974869 RepID=A0A2M8KYS6_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.190e-6
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNV 102
            YGG    IPG IQAE+FD GGEGV Y D+TTGN 
Sbjct:  100 YGGSTRTIPGTIQAEDFDEGGEGVAYHDTTTGNT 133          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: UPI0019A017D9 (PQQ-dependent sugar dehydrogenase n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=UPI0019A017D9)

HSP 1 Score: 51.2 bits (121), Expect = 3.200e-6
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNV 102
            YGG+P  +PG +QAE++D GGEGV Y D+T GN 
Sbjct:  663 YGGIPHPVPGTVQAEDYDLGGEGVAYHDNTNGNA 696          
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Match: A0A4Q5NRN4_9BACT (Carbohydrate-binding protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q5NRN4_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.200e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    1 YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDV 111
            Y GV A+IPGII+AE +D GGEG+ Y D+T GN ++ 
Sbjct:  854 YKGVKAVIPGIIEAENYDDGGEGIAYHDTTNGNYRNA 890          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102256.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL13_ECTSI6.090e-967.57Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JEN4_9PHAE6.090e-967.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V8E0Z7_9BACT4.860e-764.71CBM6 domain-containing protein n=1 Tax=Acidobacter... [more]
A0A830EKN8_9EURY9.120e-757.89Uncharacterized protein n=2 Tax=Haloarcula sebkhae... [more]
A0A537LUF1_9BACT1.250e-666.67Carbohydrate-binding protein n=2 Tax=Terrabacteria... [more]
A0A6B0GN19_9EURY1.710e-664.71Carbohydrate-binding protein n=1 Tax=Halomarina or... [more]
UPI001878CD441.710e-659.46DUF5010 C-terminal domain-containing protein n=1 T... [more]
A0A2M8KYS6_9BACT3.190e-667.65Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
UPI0019A017D93.200e-658.82PQQ-dependent sugar dehydrogenase n=1 Tax=Cytophag... [more]
A0A4Q5NRN4_9BACT3.200e-656.76Carbohydrate-binding protein n=1 Tax=bacterium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102256contigL-digitata_M_contig102256:339..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LL13
PFAMsGlyco_hydro_81
Model size135
Max annot lvl2759|Eukaryota
KEGG koko:K01180
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.98e-10
EggNOG OGsCOG5498@1|root,KOG2254@2759|Eukaryota
EC3.2.1.6
Descriptionglucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group
Cds size135
COG categoryM
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.7493503-CDS-L-digitata_M_contig102256:338..4731682406627.7493503-CDS-L-digitata_M_contig102256:338..473Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102256 339..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102256.1.1prot_L-digitata_M_contig102256.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102256 339..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102256.1.1

>prot_L-digitata_M_contig102256.1.1 ID=prot_L-digitata_M_contig102256.1.1|Name=mRNA_L-digitata_M_contig102256.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=45bp
YGGVPAIIPGIIQAEEFDAGGEGVGYSDSTTGNVKDVSGNGWLA*
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mRNA from alignment at L-digitata_M_contig102256:339..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102256.1.1 ID=mRNA_L-digitata_M_contig102256.1.1|Name=mRNA_L-digitata_M_contig102256.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=135bp|location=Sequence derived from alignment at L-digitata_M_contig102256:339..473+ (Laminaria digitata LdigPH10_18mv male)
TATGGAGGCGTGCCTGCTATAATTCCCGGCATAATTCAGGCGGAAGAGTT CGACGCGGGTGGAGAAGGCGTGGGGTACTCAGACTCTACCACTGGGAACG TTAAAGATGTGAGTGGAAATGGGTGGTTGGCATGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig102256:339..473+

>mRNA_L-digitata_M_contig102256.1.1 ID=mRNA_L-digitata_M_contig102256.1.1|Name=mRNA_L-digitata_M_contig102256.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=135bp|location=Sequence derived from alignment at L-digitata_M_contig102256:339..473+ (Laminaria digitata LdigPH10_18mv male)
TATGGAGGCGTGCCTGCTATAATTCCCGGCATAATTCAGGCGGAAGAGTT
CGACGCGGGTGGAGAAGGCGTGGGGTACTCAGACTCTACCACTGGGAACG
TTAAAGATGTGAGTGGAAATGGGTGGTTGGCATGA
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