mRNA_L-digitata_M_contig102255.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102255.1.1
Unique NamemRNA_L-digitata_M_contig102255.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.530e-37
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 RYNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFEDATTTRFDDATGTIMSGNTGLDDAELKVANGACFDEVSDAEYTP 294
            RY+TY+YLGSDAPDVVDSGRSQDN+FQEN IIGG+ESI++ +ADGTQFIDN FEDATT RF+DA  T+MSGN GL+ ++LKV NGA FD  SD  + P
Sbjct:  400 RYSTYSYLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGNIGLNMSKLKVVNGASFDASSDYGFEP 497
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.470e-37
Identity = 64/98 (65.31%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 RYNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFEDATTTRFDDATGTIMSGNTGLDDAELKVANGACFDEVSDAEYTP 294
            +YN Y+YLG+DAPDVV SGRS+DN FQENTI+GG+E+++I +ADGT+FI N+FEDA T RFDDA  T+MSGNTGL D +LKV NGA FD+ +D  + P
Sbjct:  167 KYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGNTGLTDTKLKVHNGASFDKRADYGFEP 264
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.780e-36
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    4 YNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFEDATTTRFDDATGTIMSGNTGLDDAELKVANGACFDEVSDAEYTPTC 300
            YN YTY GSD P VVDSGRSQDNIF +NTI GG ESI++  ADGT+FIDN F+ A T RF+DA  TIMSGNTGL  A LKV+ GACFD+ SD++Y P C
Sbjct:  227 YNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGNTGLGSATLKVSKGACFDKKSDSDYKPVC 325
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: A0A6H5JTN9_9PHAE (MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.190e-35
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 RYNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFE----DATTTRFDDATGTIMSGNTGLDDAE--LKVANGACFDEVSDAEYTPTC 300
            +YN Y+YLGSD PDVV SGRSQ+N+F +N+  G  E+I+I EADGTQF+DN FE    D    RFDDATG +M GNTGLDD E  LKV N +CFDE SD+ Y P C
Sbjct:   87 KYNAYSYLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDDATGNLMKGNTGLDDGEFELKVTNDSCFDEESDSGYEPLC 192
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: A0A6H5KHR6_9PHAE (MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR6_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.600e-35
Identity = 65/106 (61.32%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 RYNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFE----DATTTRFDDATGTIMSGNTGLDDAE--LKVANGACFDEVSDAEYTPTC 300
            RYN Y+YLGSD PDVV SGRSQ+N+F +N+  G  E+I+I EADGTQF+DN FE    D    RFD+ATG +M GNTGLDD E  LKV N ACFD  SD+ Y P C
Sbjct:   13 RYNAYSYLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATGNLMQGNTGLDDGEFELKVDNDACFDGESDSGYEPVC 118
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.570e-35
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 RYNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFEDATTTRFDDATGTIMSGNTGLDDAELKVANGACFDEVSDAEYTPTC 300
            +YN YTY GSD P VVDSGRSQDNIF +NTI GG ESI++  ADGT+FIDN F+ A T RF+DA  T+MSGNTGL  A LKV+ GACFD+ SD++Y P C
Sbjct:  403 KYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGNTGLGSATLKVSKGACFDKKSDSDYKPVC 502
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 6.200e-34
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    4 YNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFEDATTTRFDDATGTIMSGNTGLDDAELKVANGACFDEVSDAEYTP 294
            +NT++YLG+D P+VVDSGRSQDN+F EN IIGG+ESI + EADGTQFIDN F+DA   RF DAT T+MSGNTGL D+ LKV  GA FDE SD  + P
Sbjct:  375 FNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGNTGLADSTLKVDRGATFDESSDHGFEP 471
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.270e-30
Identity = 63/106 (59.43%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:    1 RYNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFE----DATTTRFDDATGTIMSGNTGLD--DAELKVANGACFDEVSDAEYTPTC 300
            +YN YTYLGSD PDVV SGRSQ+N+F +N+  G  E+I+I EADGTQF+DN FE    D    RFDDA  ++M GNTGLD  D ELKV N +CFD  SD+ Y P C
Sbjct:  407 KYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 6.090e-29
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    4 YNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFE----DATTTRFDDATGTIMSGNTGLDDAE--LKVANGACFDEVSDAEYTPTC 300
            YN Y+YLG+D PDVV SGRSQ+N+F +N+  G  E+I+I EADGTQF+DN FE    D    RFD+AT  +M GNTGLDD E  LKV N ACFD  +D+ Y P C
Sbjct:  404 YNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508
[Close]
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 117 bits (293), Expect = 7.880e-29
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 RYNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFIDNNFEDATTTRFDDATGTIMSGNTGLDDAELKVANGACFDEVSDAEYTPTC 300
            +YN YTY GSDAP VVDSGRSQD         GG E++++  ADGT+FIDN F+ A T RF+D  GT+MSGN+GL  A LKV +G+CFD+ SD+ Y P C
Sbjct:  400 KYNVYTYQGSDAPWVVDSGRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNSGLGGASLKVTDGSCFDKKSDSAYKPVC 499
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102255.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Q7XAJ7_9PHAE1.530e-3771.43Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAK0_9PHAE6.470e-3765.31Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ9_9PHAE1.780e-3667.68Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
A0A6H5JTN9_9PHAE1.190e-3561.32MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KHR6_9PHAE1.600e-3561.32MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
Q7XAK2_9PHAE8.570e-3566.00Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
Q7XAJ8_9PHAE6.200e-3467.01Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D7FXE4_ECTSI1.270e-3059.43Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI6.090e-2958.10Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
A8CEP1_SACJA7.880e-2957.00Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102255contigL-digitata_M_contig102255:443..745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G8D9
PFAMsFn3-like,Glyco_hydro_3,Glyco_hydro_3_C,Polysacc_lyase,WSC
Model size303
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.52e-09
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC3.2.1.37
Descriptionprotein xylosyltransferase activity
Cds size303
COG categoryU
CAZyGH3
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.7158217-CDS-L-digitata_M_contig102255:442..7451682406627.7158217-CDS-L-digitata_M_contig102255:442..745Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102255 443..745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102255.1.1prot_L-digitata_M_contig102255.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102255 443..745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102255.1.1

>prot_L-digitata_M_contig102255.1.1 ID=prot_L-digitata_M_contig102255.1.1|Name=mRNA_L-digitata_M_contig102255.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=101bp
RYNTYTYLGSDAPDVVDSGRSQDNIFQENTIIGGLESIQINEADGTQFID
NNFEDATTTRFDDATGTIMSGNTGLDDAELKVANGACFDEVSDAEYTPTC
*
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mRNA from alignment at L-digitata_M_contig102255:443..745-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102255.1.1 ID=mRNA_L-digitata_M_contig102255.1.1|Name=mRNA_L-digitata_M_contig102255.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=303bp|location=Sequence derived from alignment at L-digitata_M_contig102255:443..745- (Laminaria digitata LdigPH10_18mv male)
AGGTATAACACCTACACCTACCTTGGATCCGACGCGCCCGATGTGGTGGA
CTCCGGACGGTCCCAGGACAACATCTTCCAGGAGAACACGATCATCGGGG
GTCTGGAGAGCATCCAGATCAATGAGGCCGACGGCACCCAGTTCATCGAC
AACAATTTCGAGGATGCCACGACGACCCGCTTCGATGACGCTACGGGAAC
CATCATGTCGGGAAACACCGGCCTCGACGACGCGGAGCTTAAGGTCGCAA
ACGGCGCCTGTTTCGACGAAGTTTCCGACGCCGAGTACACCCCCACTTGT
TGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig102255:443..745-

>mRNA_L-digitata_M_contig102255.1.1 ID=mRNA_L-digitata_M_contig102255.1.1|Name=mRNA_L-digitata_M_contig102255.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=303bp|location=Sequence derived from alignment at L-digitata_M_contig102255:443..745- (Laminaria digitata LdigPH10_18mv male)
AGGTATAACACCTACACCTACCTTGGATCCGACGCGCCCGATGTGGTGGA
CTCCGGACGGTCCCAGGACAACATCTTCCAGGAGAACACGATCATCGGGG
GTCTGGAGAGCATCCAGATCAATGAGGCCGACGGCACCCAGTTCATCGAC
AACAATTTCGAGGATGCCACGACGACCCGCTTCGATGACGCTACGGGAAC
CATCATGTCGGGAAACACCGGCCTCGACGACGCGGAGCTTAAGGTCGCAA
ACGGCGCCTGTTTCGACGAAGTTTCCGACGCCGAGTACACCCCCACTTGT
TGA
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