mRNA_L-digitata_M_contig102211.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102211.1.1
Unique NamemRNA_L-digitata_M_contig102211.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: A0A7X9DZR4_9DELT (Elongation factor Ts n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7X9DZR4_9DELT)

HSP 1 Score: 232 bits (592), Expect = 1.080e-74
Identity = 109/179 (60.89%), Postives = 147/179 (82.12%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVAAMNAAAA 537
            L++KG+A+ GKKA RVA+EG V SY+H+GGKIGVLVEVNCETDFVARG+ F  F K++AMQ+AAA P+Y+ RE VP  VV  ++ +++ QVIE GKPEK+ADKIV+G++NKWY+E CL++QP+++E   +++ LR ++V K GENVT+RRF R++LGEGIEK+  DLAAEVAA   A+A
Sbjct:   40 LREKGIAQAGKKASRVAAEGKVESYLHMGGKIGVLVEVNCETDFVARGEAFQAFCKEIAMQVAAANPQYVTREEVPAQVVEAEKAIYRKQVIESGKPEKVADKIVEGRLNKWYAEFCLLDQPWIREQDKTIDQLRKELVAKTGENVTIRRFARFQLGEGIEKKKSDLAAEVAAQLQASA 218          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: A0A117M327_9FIRM (Elongation factor Ts n=1 Tax=Pelotomaculum thermopropionicum TaxID=110500 RepID=A0A117M327_9FIRM)

HSP 1 Score: 223 bits (569), Expect = 3.260e-71
Identity = 101/174 (58.05%), Postives = 142/174 (81.61%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVAAM 522
            L++KGLA   KKAGR+A+EG V +YIH  G+IGVLVE+NCETDFVA+ D+F  FTKD+AMQIAA++P+++ RE++P D +AK+R++ + Q + +GKPEKI +K+VDG++ K+Y E+CL+EQPF+K+P ++V  L  + + K GEN+TVRRFTRYE+GEGI K+  DLAAEV A+
Sbjct:   40 LREKGLAAAAKKAGRIAAEGRVEAYIHGAGRIGVLVEINCETDFVAKTDEFKNFTKDIAMQIAASKPDFVRREDMPADFIAKEREILRAQALNEGKPEKIVEKMVDGRLEKYYKEVCLLEQPFIKDPDITVGQLLTEKISKIGENITVRRFTRYEMGEGITKKQADLAAEVEAV 213          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: UPI0004E20E39 (translation elongation factor Ts n=1 Tax=Desulfofalx alkaliphila TaxID=105483 RepID=UPI0004E20E39)

HSP 1 Score: 223 bits (568), Expect = 4.480e-71
Identity = 103/174 (59.20%), Postives = 140/174 (80.46%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVAAM 522
            L++KGLA   KKA R+ +EG V SYIH GG+IGVLVEVNCETDFVA+ DDF +  +D+AMQIAA++PEY++RE VP +V+ K++++ + Q + +GKPEKI +K+V G+I+K+Y EICL+EQPF+K+P ++V+ L  + + K GEN++VRRF RYELGEGIEKR  D AAEVAA 
Sbjct:   41 LREKGLAAAAKKASRITAEGLVESYIHAGGRIGVLVEVNCETDFVAKTDDFKDLVRDIAMQIAASKPEYVSREEVPSEVIEKEKEVLRAQALNEGKPEKIVEKMVQGRIDKYYKEICLLEQPFIKDPDVTVQQLVTEKIAKIGENISVRRFVRYELGEGIEKRQEDFAAEVAAQ 214          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: A0A661P0Q8_9DELT (Elongation factor Ts n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661P0Q8_9DELT)

HSP 1 Score: 223 bits (568), Expect = 4.940e-71
Identity = 104/174 (59.77%), Postives = 144/174 (82.76%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVAAM 522
            L++KG+A   K+AGRVA+EG V +YIH+GG+IGVLVEVNCETDFVARG+DF  F ++VAMQ+AAA P+YL+R++VP +VV  ++ +++ Q  E GKPEKI D+I +G++ K++SE+CL++QP+++E KM+V+ LR ++V K GENV VRRF R+ELGEGIEK+  DLAAEVAA 
Sbjct:   40 LREKGMASASKRAGRVAAEGQVEAYIHMGGRIGVLVEVNCETDFVARGEDFKNFCREVAMQVAAANPQYLSRDDVPAEVVEAEKQIYRKQAQESGKPEKIWDQIAEGRLKKFFSEVCLLDQPYIREQKMTVDKLRQELVAKTGENVVVRRFARFELGEGIEKKKSDLAAEVAAQ 213          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: C0GIU3_9FIRM (Elongation factor Ts n=1 Tax=Dethiobacter alkaliphilus AHT 1 TaxID=555088 RepID=C0GIU3_9FIRM)

HSP 1 Score: 223 bits (567), Expect = 5.950e-71
Identity = 102/174 (58.62%), Postives = 140/174 (80.46%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVAAM 522
            L++KGLA   KKAGR+A+EG VH+YIH+GGKIGVLVEVNCETDFVAR DDF +F +DVAMQIAA  P+YL+RE VPE+++ K+R++ + Q + +GKPEK+ +KI+ G+I K+Y+E CL+EQ F+++   S+ DL    + K GEN+++RRFTRYE+GEG+EK+  +LA EVA M
Sbjct:   39 LREKGLAAAAKKAGRIAAEGIVHAYIHMGGKIGVLVEVNCETDFVARTDDFQDFVRDVAMQIAATNPQYLSREEVPEEMLEKEREILRAQALNEGKPEKVVEKIIAGRIEKYYAENCLLEQAFIRDTDKSITDLLKDKIAKIGENISIRRFTRYEMGEGLEKKGCNLAEEVAQM 212          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: R4KNR8_9FIRM (Elongation factor Ts n=2 Tax=Desulfallaceae TaxID=2867375 RepID=R4KNR8_9FIRM)

HSP 1 Score: 223 bits (567), Expect = 6.150e-71
Identity = 105/174 (60.34%), Postives = 137/174 (78.74%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVAAM 522
            L++KGLA   KK+GR+ +EG V SYIH GGKIGVLVEVNCETDFVA+ D+F E  +D+AMQIAAARP+Y+ARE VPE +V K+R++   Q   +GKPEKI +K+V+G+I K+Y EICL+EQPF+K+P  +++ L  + + K GEN++VRRF RYELGEG+EKR  D AAEV A 
Sbjct:   41 LREKGLASAAKKSGRITAEGLVESYIHAGGKIGVLVEVNCETDFVAKTDEFKELVRDIAMQIAAARPQYVAREEVPESMVVKEREILAAQAANEGKPEKIIEKMVEGRIEKFYKEICLLEQPFIKDPDKTIKQLVTEKIAKIGENISVRRFVRYELGEGLEKRQDDFAAEVMAQ 214          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: A0A424YED0_9FIRM (Elongation factor Ts n=1 Tax=Candidatus Syntrophonatronum acetioxidans TaxID=1795816 RepID=A0A424YED0_9FIRM)

HSP 1 Score: 222 bits (565), Expect = 1.280e-70
Identity = 102/174 (58.62%), Postives = 141/174 (81.03%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVAAM 522
            L++KGL+   KK+GR+ SEG V SYIH+GGKIGVLVEVNCETDFVA+ D+F +F K++ MQIAAA P+Y++R+ VP +VV K+ ++FK Q I++GKPEK+ D+I++GKI K+Y EICL+EQ F+++  + V +L  + + K GENVT+RRFTRYE+GEG+EK+  DLAAEV A+
Sbjct:   41 LREKGLSAAVKKSGRITSEGLVDSYIHMGGKIGVLVEVNCETDFVAKNDEFKQFVKNITMQIAAANPQYISRDEVPREVVDKEAEIFKAQAIKEGKPEKVIDRIIEGKIEKYYEEICLLEQAFIRDSDIKVSELLKETIAKLGENVTIRRFTRYEMGEGLEKKKDDLAAEVEAI 214          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: A0A7X9BDY6_9FIRM (Elongation factor Ts n=1 Tax=Peptococcaceae bacterium TaxID=2052179 RepID=A0A7X9BDY6_9FIRM)

HSP 1 Score: 222 bits (565), Expect = 1.320e-70
Identity = 104/172 (60.47%), Postives = 137/172 (79.65%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVA 516
            L++KGLA   KKAGRVA+EG V SYIH GG+IGVLVEVNCETDFVA+ D+F    KD+AMQIAAA+PEY+ +E+VPE+ V  ++ + + Q + +GKPEKI DK+V+G+I K+Y E+CL+EQPF+KEP ++++ L    + K GEN+++RRF RYELGEGIEK   DLAAEVA
Sbjct:   40 LREKGLAAAAKKAGRVAAEGLVESYIHGGGRIGVLVEVNCETDFVAKTDEFKSLVKDIAMQIAAAKPEYIRKEDVPEEAVEHEKAVLRAQALNEGKPEKIVDKMVEGRIEKYYKEVCLLEQPFIKEPDLTIKQLLTDKIAKIGENISIRRFARYELGEGIEKAQTDLAAEVA 211          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: D5XEZ3_THEPJ (Elongation factor Ts n=2 Tax=Thermincola TaxID=278993 RepID=D5XEZ3_THEPJ)

HSP 1 Score: 221 bits (564), Expect = 1.650e-70
Identity = 103/174 (59.20%), Postives = 139/174 (79.89%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEVAAM 522
            L++KGLA   KKAGR+A+EG V SYIH GGKIGVLVEVNCETDFVA+ D+F  F +DVAMQIAAA+PEY+ RE VPE++V K++++ + Q + +GKPE I DK+V+G+I K++ E+CLMEQPF+K+P +++E L  + V K GE +++RRF RYE+GEG+EKR  + A EVAA 
Sbjct:   39 LREKGLAAAAKKAGRIAAEGIVDSYIHAGGKIGVLVEVNCETDFVAKTDEFKSFVRDVAMQIAAAKPEYVRREEVPEEIVQKEKEILRAQALNEGKPEAIVDKMVNGRIEKFFKEVCLMEQPFIKDPDLTIEQLLNEKVAKIGEKISIRRFVRYEMGEGLEKRQDNFAEEVAAQ 212          
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Match: T2RM90_9FIRM (Elongation factor Ts n=6 Tax=Dehalobacter TaxID=56112 RepID=T2RM90_9FIRM)

HSP 1 Score: 221 bits (564), Expect = 1.760e-70
Identity = 104/171 (60.82%), Postives = 139/171 (81.29%), Query Frame = 1
Query:    1 LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDDFMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKIADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRRFTRYELGEGIEKRSVDLAAEV 513
            L++KGLA   KK GR+A+EGTV +YIH GG+IGVL+E+NCETDFV+RGD+F + TKD+AMQIAAA+P Y+ +E+VP DVVA +R++F+ Q + +GKPEKI DK+VDG+I K+Y E+CL+EQPF+K+P + V+DL    + K GE + +RRFTRYELGEGIEKR  + A EV
Sbjct:   41 LREKGLAAAAKKEGRIAAEGTVEAYIHGGGRIGVLLELNCETDFVSRGDEFKQLTKDIAMQIAAAKPLYVNKEDVPADVVAHEREIFRAQALNEGKPEKIVDKMVDGRIEKFYKEVCLVEQPFIKDPDVLVKDLVMAKIAKIGEKIAIRRFTRYELGEGIEKRQDNFADEV 211          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102211.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9DZR4_9DELT1.080e-7460.89Elongation factor Ts n=2 Tax=Deltaproteobacteria T... [more]
A0A117M327_9FIRM3.260e-7158.05Elongation factor Ts n=1 Tax=Pelotomaculum thermop... [more]
UPI0004E20E394.480e-7159.20translation elongation factor Ts n=1 Tax=Desulfofa... [more]
A0A661P0Q8_9DELT4.940e-7159.77Elongation factor Ts n=1 Tax=Deltaproteobacteria b... [more]
C0GIU3_9FIRM5.950e-7158.62Elongation factor Ts n=1 Tax=Dethiobacter alkaliph... [more]
R4KNR8_9FIRM6.150e-7160.34Elongation factor Ts n=2 Tax=Desulfallaceae TaxID=... [more]
A0A424YED0_9FIRM1.280e-7058.62Elongation factor Ts n=1 Tax=Candidatus Syntrophon... [more]
A0A7X9BDY6_9FIRM1.320e-7060.47Elongation factor Ts n=1 Tax=Peptococcaceae bacter... [more]
D5XEZ3_THEPJ1.650e-7059.20Elongation factor Ts n=2 Tax=Thermincola TaxID=278... [more]
T2RM90_9FIRM1.760e-7060.82Elongation factor Ts n=6 Tax=Dehalobacter TaxID=56... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102211contigL-digitata_M_contig102211:1..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121423.JONT01000004_gene1596
Preferred nametsf
PFAMsEF_TS
Model size549
Max annot lvl186801|Clostridia
KEGG koko:K02357
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.34e-72
EggNOG OGsCOG0264@1|root,COG0264@2|Bacteria,1TPFJ@1239|Firmicutes,248J2@186801|Clostridia,260PI@186807|Peptococcaceae
DescriptionAssociates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Cds size549
COG categoryJ
BRITEko00000,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.271551-CDS-L-digitata_M_contig102211:0..5491682406627.271551-CDS-L-digitata_M_contig102211:0..549Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102211 1..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102211.1.1prot_L-digitata_M_contig102211.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102211 1..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102211.1.1

>prot_L-digitata_M_contig102211.1.1 ID=prot_L-digitata_M_contig102211.1.1|Name=mRNA_L-digitata_M_contig102211.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=183bp
LQKKGLAEVGKKAGRVASEGTVHSYIHLGGKIGVLVEVNCETDFVARGDD
FMEFTKDVAMQIAAARPEYLARENVPEDVVAKQRDLFKGQVIEQGKPEKI
ADKIVDGKINKWYSEICLMEQPFVKEPKMSVEDLRAQVVQKCGENVTVRR
FTRYELGEGIEKRSVDLAAEVAAMNAAAADKS*
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mRNA from alignment at L-digitata_M_contig102211:1..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102211.1.1 ID=mRNA_L-digitata_M_contig102211.1.1|Name=mRNA_L-digitata_M_contig102211.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=549bp|location=Sequence derived from alignment at L-digitata_M_contig102211:1..549+ (Laminaria digitata LdigPH10_18mv male)
CTCCAAAAGAAGGGCCTCGCCGAAGTCGGTAAGAAGGCCGGCCGCGTCGC CTCCGAAGGCACCGTGCACAGCTACATCCACCTCGGTGGAAAGATCGGCG TCCTGGTCGAGGTGAACTGCGAGACGGACTTCGTCGCCCGCGGTGACGAC TTCATGGAGTTCACCAAGGACGTCGCGATGCAGATCGCCGCCGCTCGCCC CGAGTATCTCGCCCGTGAAAACGTGCCCGAGGACGTCGTGGCCAAGCAGC GTGACCTCTTCAAGGGCCAGGTCATCGAGCAGGGCAAGCCGGAGAAGATC GCCGACAAGATCGTCGATGGCAAAATCAACAAGTGGTACTCCGAGATTTG CCTCATGGAGCAGCCCTTTGTGAAGGAGCCCAAGATGAGCGTCGAGGACC TGCGCGCCCAGGTTGTGCAGAAGTGCGGTGAGAACGTCACCGTGCGCCGC TTCACCCGCTATGAGCTGGGTGAGGGCATCGAGAAGCGCTCCGTGGACCT CGCCGCCGAGGTTGCCGCTATGAACGCGGCCGCCGCCGACAAGTCCTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102211:1..549+

>mRNA_L-digitata_M_contig102211.1.1 ID=mRNA_L-digitata_M_contig102211.1.1|Name=mRNA_L-digitata_M_contig102211.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=549bp|location=Sequence derived from alignment at L-digitata_M_contig102211:1..549+ (Laminaria digitata LdigPH10_18mv male)
CTCCAAAAGAAGGGCCTCGCCGAAGTCGGTAAGAAGGCCGGCCGCGTCGC
CTCCGAAGGCACCGTGCACAGCTACATCCACCTCGGTGGAAAGATCGGCG
TCCTGGTCGAGGTGAACTGCGAGACGGACTTCGTCGCCCGCGGTGACGAC
TTCATGGAGTTCACCAAGGACGTCGCGATGCAGATCGCCGCCGCTCGCCC
CGAGTATCTCGCCCGTGAAAACGTGCCCGAGGACGTCGTGGCCAAGCAGC
GTGACCTCTTCAAGGGCCAGGTCATCGAGCAGGGCAAGCCGGAGAAGATC
GCCGACAAGATCGTCGATGGCAAAATCAACAAGTGGTACTCCGAGATTTG
CCTCATGGAGCAGCCCTTTGTGAAGGAGCCCAAGATGAGCGTCGAGGACC
TGCGCGCCCAGGTTGTGCAGAAGTGCGGTGAGAACGTCACCGTGCGCCGC
TTCACCCGCTATGAGCTGGGTGAGGGCATCGAGAAGCGCTCCGTGGACCT
CGCCGCCGAGGTTGCCGCTATGAACGCGGCCGCCGCCGACAAGTCCTAG
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