mRNA_L-digitata_M_contig1022.14.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1022.14.1
Unique NamemRNA_L-digitata_M_contig1022.14.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: D8LC92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC92_ECTSI)

HSP 1 Score: 450 bits (1157), Expect = 2.670e-158
Identity = 227/274 (82.85%), Postives = 246/274 (89.78%), Query Frame = 1
Query:    1 MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMVAKLKASAASR 822
            M NCY P++AP  +D  SKRRDR GKA NG  +A  +P+LA+T   R DGRAPY+MRQVYMDVG+VAHATGSAYVEFNHTKVICAVYGPHAQTG DS+FSEEGQL+CDFSYAPFA PGGRRE+RGGKKDDERELSTLLRQTLESS+QVHRLTKSVV +HVMVLQADGGELAVATTCASMALADAGIELYDLVT+CSVGY GTQMVLDPT  EEKSGAGVM IALMPGSQ VTQWWQEGRF+G++VAEALELCTDGCGCVHKMM AKLKAS   +
Sbjct:    1 MNNCYKPLAAPAQNDAKSKRRDRDGKAPNG--TATKEPSLASTT--REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK 270          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A835ZHR0_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR0_9STRA)

HSP 1 Score: 241 bits (614), Expect = 5.370e-76
Identity = 136/273 (49.82%), Postives = 178/273 (65.20%), Query Frame = 1
Query:    1 MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAAR----GDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMVAKLKA 807
            MLNCYTP  AP                    A A+ +   A ++  R    GDGR   E+R+VY+D+G+V+ A+GSAY+E +HTKVICAVYGPHAQ+  D++FSEEGQLKCD   APFA P  +R    G+ D+ERELS  L+Q LE+SV++  LTK+ VD++V VL ADGG L  A TCAS+ALA+A IEL+DLV +C+   +  Q++LDPT  EE +  G + +A+MP S+ VTQW Q GR    + A A+ELC DGC  V  MM A+L A
Sbjct:    1 MLNCYTPRRAPPA------------------AVAVEEQTSADSSRKRPEHRGDGRKASELRRVYLDLGVVSQASGSAYLELDHTKVICAVYGPHAQS-MDTAFSEEGQLKCDLRMAPFAQP--KRSEVRGQTDEERELSATLQQALEASVRLDLLTKTAVDVYVTVLAADGGVLGAAITCASLALANASIELFDLVAACTAACADGQVLLDPTAQEEAAAGGSVLVAVMPSSREVTQWRQRGRLPSAQAAAAVELCMDGCAGVATMMRARLLA 252          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A7S2UZ52_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ52_9STRA)

HSP 1 Score: 229 bits (584), Expect = 5.520e-71
Identity = 135/297 (45.45%), Postives = 180/297 (60.61%), Query Frame = 1
Query:    1 MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPG---------GRRESRGGKKDD-ERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVG-YSGTQMVLDPTHAE---------EKSG----------AGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMVAKL 801
            M+NCY+P      D+     ++R           I +P+       R DGR   EMR+V++DVGI++ A+GSAY+E N TKVIC + GPHA +  D +FSE+GQL+ D  YAPFA  G          RR+    ++ D ER+ S L+RQ LE+S+Q+H L KS++D+++ VLQADGGEL  A TCAS+AL+DAGIEL+DLV  CSVG   G++++LDPT  E           SG          AGVM +   P SQ VTQWWQEG+F+ E +A  L LC DGC  +HK+M  KL
Sbjct:    1 MINCYSPAVVLETDE-----QER----------TIIKPS-------RADGRDDKEMRKVFIDVGILSCASGSAYIELNMTKVICTISGPHAISRADDTFSEQGQLRVDLRYAPFARVGQSQYETNDRDRRDHHPARQTDGERDASALIRQALEASIQMHLLPKSLIDVYIWVLQADGGELGAAVTCASLALSDAGIELFDLVVGCSVGCLGGSRVLLDPTEVEISQQRAPEDSSSGGARGGKQGAKAGVMTVTFTPASQEVTQWWQEGQFDQESMARGLALCIDGCLVMHKIMKEKL 275          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: K3XAM5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAM5_GLOUD)

HSP 1 Score: 209 bits (532), Expect = 1.890e-63
Identity = 119/265 (44.91%), Postives = 162/265 (61.13%), Query Frame = 1
Query:    1 MLNCYTPISA-PRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMV 792
            M NCY P++A P    G +K +D    AA     A+ + A+              E+RQ +M +G+V+ A+GSAYVEFN T+V+C+VYGP   T     FS EGQL CDF YAPFA P GRRE   G+  DE E+S++L Q L  +V + +L K VV I+V+VL++DGGELA A  CAS+AL DA +E+YD+VT+   G   +++VLDP H EE  G G + +A MP    VT   Q G+    E+ EA++LCTD C  V K ++
Sbjct:    1 MQNCYFPVNAKPARAHGAAKDKD----AAVDPIKALLEKAVRLDELRSSSD----ELRQAFMKLGVVSGASGSAYVEFNRTRVVCSVYGPRNDTRSRREFSNEGQLVCDFKYAPFADPVGRRER--GQDPDELEMSSILTQALSPAVMLSKLPKCVVSIYVVVLESDGGELAAAINCASLALIDAAVEMYDIVTASGAGIVNSKVVLDPCHKEEVYGDGKLLLAFMPTMGKVTYMLQAGKIEHSELQEAVDLCTDACNGVMKTLM 255          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A8K1CTD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTD4_PYTOL)

HSP 1 Score: 201 bits (511), Expect = 2.160e-60
Identity = 116/265 (43.77%), Postives = 157/265 (59.25%), Query Frame = 1
Query:    1 MLNCYTP-ISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMV 792
            M NCY P I+ PR       ++D        D   I +        A  D     EMR  +M +G+V+ A GSAYVEFN T+V+C+VYGP   T     FS+EGQL CDF YAPFA   GRRE   G+ DDE E+S++L Q L  +V + +L K VV I+V+VL++DG +LA A  CAS+AL DA +E+YD+VT+ S G   +Q+VLDP H EE  G G + +A MP    +T   Q G+    ++ EA++LCTD C  V K ++
Sbjct:    1 MQNCYFPAIAKPRGGGDAQSKQD--------DQVMIDKTLRLDRIRASAD-----EMRPAFMRLGVVSGAAGSAYVEFNRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADSTGRRER--GQDDDELEMSSILTQALSPAVMLAKLPKCVVSIYVVVLESDGSDLAAAINCASLALIDAAVEMYDIVTAASAGIVDSQIVLDPCHEEEVHGEGNVVMAYMPSVGQLTHMVQSGKIQHGQLQEAVDLCTDACSGVMKHLL 250          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A2D4C421_PYTIN (Exosome complex exonuclease MTR3-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C421_PYTIN)

HSP 1 Score: 197 bits (500), Expect = 1.200e-58
Identity = 117/265 (44.15%), Postives = 159/265 (60.00%), Query Frame = 1
Query:    1 MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALAT-TAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMV 792
            M NCY P +A   +  +S            DA++ +Q AL   T       R+  EMR  +M +G+V+ A GSAYVEF+ T+V+C+VYGP   T     FS+EGQL CDF YAPFA   GRRE   G+ DDE ELS++L Q L  +V + +L K VV I V+VL++DGGELA A  CAS+AL DA +E+YD+VT+ S     +++VLDP  AEE  G G + +A MP    +T   Q GR    ++ EA++LCT  C  + K M+
Sbjct:    1 MQNCYFPXAAVAPERSSST-----------DATSDAQRALIDKTLRLDRVRRSADEMRPTFMKLGVVSGAAGSAYVEFHRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADASGRRER--GQDDDELELSSILTQALSPAVMLSKLPKCVVSIFVVVLESDGGELAAAINCASLALVDAAVEMYDVVTAASAAVVDSRVVLDPCAAEETRGDGKVVLAYMPTLGRLTHTLQSGRLQHAQLQEAVDLCTXACTGLMKNML 252          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: D0NP71_PHYIT (Exosome complex exonuclease MTR3-like protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NP71_PHYIT)

HSP 1 Score: 191 bits (484), Expect = 1.960e-56
Identity = 108/274 (39.42%), Postives = 155/274 (56.57%), Query Frame = 1
Query:    1 MLNCYTPI------SAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGC-GCVHKMMVAKL 801
            M NCY P+      +AP+ DD   +R D+   +++                         EMR+ +M +G V+ A GSAYVE   T+V+CAVYGP   T     FS++GQL CD  YAPFA    RRE   G+  DE ELS ++ + L  +V +H+L K ++ + V +L+ DGG LA A  CAS+ALADA +E+YD+VT+ S G     +VLDP+  EE+ G G +A+A MP    VT   Q G+ +  ++ EA++LCTD C G +  ++ A L
Sbjct:    1 MQNCYYPLPVQPQLAAPKDDDAPMERLDKSRTSSD-------------------------EMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYMLQAGKIHHTQLQEAVDLCTDACTGVIRSLLTASL 247          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: L8HCU8_ACACA (3' exoribonuclease family, domain 1 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCU8_ACACA)

HSP 1 Score: 190 bits (483), Expect = 5.320e-56
Identity = 104/226 (46.02%), Postives = 147/226 (65.04%), Query Frame = 1
Query:  145 DGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGCGCVHKMMVAKLKASAASR 822
            DGR+P E R V++  G+++ A GSAY+E N TKVIC VYGP  QT + + +SE+G+L C F  A FA  G RR+    K  +E+ELS L+ Q LE S+++    KS +D+ V+VL+  GG +  A T AS+ALADAGIE+YDLV SCSVG   + ++LDP+ AEEK+    + +A+MP +  +TQ  Q G     +  EA+ELC DGC  +++MM   L  +AA +
Sbjct:   41 DGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPR-QTPK-TVYSEKGKLNCFFKLATFAENGERRKYVSDK--EEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSVGVVDSHILLDPSIAEEKAAQSNLMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQNLLETAAQK 262          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: H3GV34_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GV34_PHYRM)

HSP 1 Score: 186 bits (471), Expect = 1.770e-54
Identity = 99/214 (46.26%), Postives = 135/214 (63.08%), Query Frame = 1
Query:  163 EMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGC-GCVHKMMVAKL 801
            EMR+ +M +G V+ A GSAYVE   T+V+CAVYGP   T     FS++GQL CD  YAPFA    RRE   G+  DE ELS ++ + L  +V +H+L K V+ + V VL+ DGG  A A  CAS+ALADA +E+YD+VT+ S G   + +VLDP+  EE+ G G MA+A MP    VT   Q G+ +  ++ EA++LCTD C G    ++ A L
Sbjct:   36 EMRRSFMQLGAVSGAAGSAYVELGRTRVVCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKWTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVLSLFVTVLEDDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKMALAYMPSMGRVTYMLQAGKVHHTQLQEAVDLCTDACTGVTRTLLTASL 247          
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Match: A0A3F2RG10_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RG10_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.990e-53
Identity = 108/274 (39.42%), Postives = 148/274 (54.01%), Query Frame = 1
Query:    1 MLNCYTPISA------PRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDGRAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFSEEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHRLTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYSGTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALELCTDGC-GCVHKMMVAKL 801
            M NCY P+        P  DD    R D    +++                         EMR+ +M +  V+ A GSAYVE   T+V+CAVYGP A T     FS +GQL CD  +APFA    RRE   G+  DE ELS ++ + L  +V +H+L K VV + V VL+ DGG  A A  CAS+ALADA +E+YD+VT+ S G   + +VLDP+  EE+ G G +A+A MP    VT   Q G+ +  ++ EA++LCTD C G    ++ A L
Sbjct:    1 MQNCYYPLPVKPQLPVPADDDAVMNRLDASRSSSD-------------------------EMRRPFMQIRAVSGAAGSAYVELGRTRVVCAVYGPRADTRPRREFSNDGQLVCDVKFAPFADALTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVVSVFVTVLENDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKLALAYMPSMGQVTYMLQAGQIHHTQLQEAVDLCTDACTGVTRSLLTASL 247          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1022.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC92_ECTSI2.670e-15882.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHR0_9STRA5.370e-7649.82Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S2UZ52_9STRA5.520e-7145.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3XAM5_GLOUD1.890e-6344.91Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CTD4_PYTOL2.160e-6043.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C421_PYTIN1.200e-5844.15Exosome complex exonuclease MTR3-like protein n=2 ... [more]
D0NP71_PHYIT1.960e-5639.42Exosome complex exonuclease MTR3-like protein n=16... [more]
L8HCU8_ACACA5.320e-5646.023' exoribonuclease family, domain 1 domain contain... [more]
H3GV34_PHYRM1.770e-5446.26Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A3F2RG10_9STRA1.990e-5339.42Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1022contigL-digitata_M_contig1022:20762..23614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC92
PFAMsRNase_PH,RNase_PH_C
Model size834
Max annot lvl2759|Eukaryota
KEGG koko:K12587
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.38e-159
EggNOG OGsCOG0689@1|root,KOG1068@2759|Eukaryota
Ec32 ortholog descriptionMtr3 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-14_005640.1
Descriptionpolyadenylation-dependent snoRNA 3'-end processing
Cds size834
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406627.1881456-CDS-L-digitata_M_contig1022:20761..209861682406627.1881456-CDS-L-digitata_M_contig1022:20761..20986Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1022 20762..20986 -
1682406627.1982062-CDS-L-digitata_M_contig1022:21295..214631682406627.1982062-CDS-L-digitata_M_contig1022:21295..21463Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1022 21296..21463 -
1682406627.2128687-CDS-L-digitata_M_contig1022:21622..218201682406627.2128687-CDS-L-digitata_M_contig1022:21622..21820Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1022 21623..21820 -
1682406627.2253904-CDS-L-digitata_M_contig1022:22144..222131682406627.2253904-CDS-L-digitata_M_contig1022:22144..22213Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1022 22145..22213 -
1682406627.2352517-CDS-L-digitata_M_contig1022:23440..236141682406627.2352517-CDS-L-digitata_M_contig1022:23440..23614Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1022 23441..23614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1022.14.1prot_L-digitata_M_contig1022.14.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1022 20762..23614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1022.14.1

>prot_L-digitata_M_contig1022.14.1 ID=prot_L-digitata_M_contig1022.14.1|Name=mRNA_L-digitata_M_contig1022.14.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=278bp
MLNCYTPISAPRHDDGTSKRRDRGGKAANGDASAISQPALATTAAARGDG
RAPYEMRQVYMDVGIVAHATGSAYVEFNHTKVICAVYGPHAQTGRDSSFS
EEGQLKCDFSYAPFATPGGRRESRGGKKDDERELSTLLRQTLESSVQVHR
LTKSVVDIHVMVLQADGGELAVATTCASMALADAGIELYDLVTSCSVGYS
GTQMVLDPTHAEEKSGAGVMAIALMPGSQLVTQWWQEGRFNGEEVAEALE
LCTDGCGCVHKMMVAKLKASAASRKDT*
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mRNA from alignment at L-digitata_M_contig1022:20762..23614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1022.14.1 ID=mRNA_L-digitata_M_contig1022.14.1|Name=mRNA_L-digitata_M_contig1022.14.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2853bp|location=Sequence derived from alignment at L-digitata_M_contig1022:20762..23614- (Laminaria digitata LdigPH10_18mv male)
ATGCTCAACTGCTACACGCCGATATCCGCTCCTCGTCATGACGATGGAAC TAGCAAACGGCGGGACAGGGGCGGGAAGGCGGCTAACGGCGACGCGAGTG CCATAAGCCAGCCAGCGCTTGCGACTACTGCTGCTGCCCGCGGAGATGGA CGCGCTCCATATGAAATGCGCCAGGTATGCTGATGAATGTCATACTTATT CTACGTTGATATTTACCCTCGAGGGACCCAGATATAGCGACCTAAAAAGC GACAAGTACCGTCGTATCAACCTTCTACAGTACGCATGTTTGAAGAGCGT GCAACAGCGGTATCATATGTACAAGAATCCTCATGCTGCGCACGTGTCGT TCATATCCTTCCATTGCACTTCGGACACACATCCTACCCCCTACCCAACC AGCCCGGACTGCTTCGTGTGGTGAACGCTGTAATCGTCACTTTTCTCCCT AATTTTAACTTGAAGTTACTCGGTCCGTTGTATTTCACGTCGAAGGAAGA GCGACACGGCAACCCGACGGCGGCGCGGTCTATACGACGGAAGCAGCGAC CTACCGCCCATCGTTCGACGCATCGAAAATAGACTCATCCTACAGTACGG TCAGCTTTGTCACAGCATTGGCCGGCCGCAAGAAATAGCGAAGAATTGCT TGTGAAAAGCACGCAAATTGCTTGCGAATAGCGCGCAAAGCTACGATGGT GTTGTCAAGTGGTTACGGTCAACCCCAGCCGCCCTCTGCTTGGCGGTGTC TCCGCATGACTTCTGCGACGCTCTATTTCAGATTATCTTAAGACGCTGTT AGGCGTGAAGCAATGCGCTGGTATGCATTACCATTTTGAGCCTTTCATTT TTGGCAGACCGTTCGTATGTTTTCCAAGCGACGAGGCAAAGGTTAAGGTT CGGCCTATCGTCCAGAATCGACCTTCGGAACACTGGTGTGACAGTTTGGT CGGTTGCGGGGGGCTTCAGCAGGTCACTCCTGCTGTACTTATAGACAGCA TGTTGCGGAATGGCAGCCACATGCTGGTATTTGGTGCCGTGGCACAGACT CAAACTGCGAGGGTGGTCATATTCGGATCGCACCGAGCTCACAGCACAAC TCCCTTCAAACTAAAACGCTTAAGTTGTGAGTGCGTACAGCTGTCTGTGC GAGCGCGCTTAAATTGTCGAGATTATGTTACTTACAGTAGTTTGGTCCTT CTGAATTATTAACATGGGTCGAGGTCAACTTGTGGTAACCCCAACCTTAC GTATGCAGGAGTAATATATTCCATAAGACCCAGTTTTTTTTCCCCGGACA CCATGGGACTCCGTGGCCTATACTTCCGAAACTCTAGGAAACATGGCTTC ATACGAACAGGACGGTGATCGTTTGATGTTTTATCGTTCCGGTCTTGGCA GGTATACATGGATGTGGGGATTGTTGCTCATGCAACAGGATCGGCCTACG TGGAGTTCAATCATACCAAGGTCAGGCCCTGCCATCACACGGGCTTCGAA ATCGTGGCCGAAGCAGGACAACATAGGAATTCCTTATCATATGCTCACAG CTGGGTTTCACTAAGCCTCACGATTATTATTATTATTAATAGAAGAGCCA CTAAGCGGCTCACCCCCAGCCGTGTGATGGGAGGGATGCCGGGACGGCTC CCATCATGTATGTTCTTGCGGTGAGCATGGATGCCTTTAACCAGTGTTTA ATTGAATCGTTAAGCTGTACAGGATGCGGTAACGACCGTTACTCATTGTT TTGCGCCGCCCGTTCGACTCGCTCTCGTTCTTTTGTTATGGAAGGTGATT TGTGCTGTTTATGGACCTCACGCTCAAACTGGAAGAGACTCATCTTTCAG CGAAGAAGGGCAGTTGAAATGTGATTTTTCCTACGCGCCCTTCGCGACAC CGGGAGGACGGCGCGAGTCGAGGGGAGGCAAAAAGGACGATGAAAGGGAG CTGTCCACTCTTTTGCGACAAACTCTGGAATCATCTGTTCAGGTCAGCAC GTCGTTGACTTTACCAGTGCTGGTATATTTGTTTATACTACAGTACCTGG TACAGCTGTAGCATGGACCTCCAGAGTACAGTCATGGCAACTCGCATTTT CGACATGATGGTGGTCGCTGATACAGATTTCGCAACCCGGACATTACCCA GGTTCATCGACTCACGAAATCCGTCGTTGACATCCACGTCATGGTTCTTC AAGCAGACGGGGGGGAGCTTGCGGTGGCAACAACCTGTGCATCCATGGCG TTGGCTGACGCTGGAATAGAGCTTTACGACCTCGTCACGTCGTGCTCTGT GGGCTACTCCGGGACACAGGTGAAATGTTTTCTACTACAAGAGCCAAGAG ATGAAGTTCGTAGATACCGCGCATTCCTACAGACAAAAAAAATCTAAAGG CTTGGCTTTTTTTGCCGCCTGTTCAACGGCAGTCCTAGACACGCCAAACA CATCACTACTTTGTGTTTTCTTGTGCCGGGAGAACTGAAAATCCACCTCG AGACCTCTCGGCGTGTGAGTGCATGATACCGGTGCGAATGATAAGCCACC TATTGCACCATCTTTTTTGTTGCCGGGTCCCAGAAAGCCAACCGAGTTTA CGTTTTTGTGCCCTTTATTACTTCGCAGATGGTGCTGGACCCCACACATG CAGAAGAGAAGAGCGGGGCCGGCGTTATGGCCATCGCTTTGATGCCGGGA TCACAGCTAGTAACGCAATGGTGGCAAGAAGGACGATTCAATGGAGAGGA GGTAGCTGAAGCGCTAGAGCTCTGCACCGATGGTTGCGGTTGCGTCCACA AGATGATGGTGGCTAAGCTCAAAGCCTCCGCAGCCAGCAGAAAAGATACA TAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig1022:20762..23614-

>mRNA_L-digitata_M_contig1022.14.1 ID=mRNA_L-digitata_M_contig1022.14.1|Name=mRNA_L-digitata_M_contig1022.14.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=834bp|location=Sequence derived from alignment at L-digitata_M_contig1022:20762..23614- (Laminaria digitata LdigPH10_18mv male)
ATGCTCAACTGCTACACGCCGATATCCGCTCCTCGTCATGACGATGGAAC
TAGCAAACGGCGGGACAGGGGCGGGAAGGCGGCTAACGGCGACGCGAGTG
CCATAAGCCAGCCAGCGCTTGCGACTACTGCTGCTGCCCGCGGAGATGGA
CGCGCTCCATATGAAATGCGCCAGGTATACATGGATGTGGGGATTGTTGC
TCATGCAACAGGATCGGCCTACGTGGAGTTCAATCATACCAAGGTGATTT
GTGCTGTTTATGGACCTCACGCTCAAACTGGAAGAGACTCATCTTTCAGC
GAAGAAGGGCAGTTGAAATGTGATTTTTCCTACGCGCCCTTCGCGACACC
GGGAGGACGGCGCGAGTCGAGGGGAGGCAAAAAGGACGATGAAAGGGAGC
TGTCCACTCTTTTGCGACAAACTCTGGAATCATCTGTTCAGGTTCATCGA
CTCACGAAATCCGTCGTTGACATCCACGTCATGGTTCTTCAAGCAGACGG
GGGGGAGCTTGCGGTGGCAACAACCTGTGCATCCATGGCGTTGGCTGACG
CTGGAATAGAGCTTTACGACCTCGTCACGTCGTGCTCTGTGGGCTACTCC
GGGACACAGATGGTGCTGGACCCCACACATGCAGAAGAGAAGAGCGGGGC
CGGCGTTATGGCCATCGCTTTGATGCCGGGATCACAGCTAGTAACGCAAT
GGTGGCAAGAAGGACGATTCAATGGAGAGGAGGTAGCTGAAGCGCTAGAG
CTCTGCACCGATGGTTGCGGTTGCGTCCACAAGATGATGGTGGCTAAGCT
CAAAGCCTCCGCAGCCAGCAGAAAAGATACATAG
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