mRNA_L-digitata_M_contig102197.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102197.1.1
Unique NamemRNA_L-digitata_M_contig102197.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: A0A2D7FMV2_9PROT (Carbon monoxide dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FMV2_9PROT)

HSP 1 Score: 483 bits (1242), Expect = 8.850e-164
Identity = 246/264 (93.18%), Postives = 254/264 (96.21%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEALA 792
            EIG+DPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALG+RIKHIAAHLLQA A D+TL DGMA+AG+SSVS+EEVAKTWYLKPQLLPD+VDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNV+LLDYVIVEDAG MINPMIVDGQVHGGTVQGIGTALFEEM FD SGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPP AIANAVNDALAPL  EV EIPLTPERILEALA
Sbjct:  519 EIGIDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGERIKHIAAHLLQADAGDITLDDGMAFAGSSSVSIEEVAKTWYLKPQLLPDDVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVELLDYVIVEDAGKMINPMIVDGQVHGGTVQGIGTALFEEMAFDNSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPAAIANAVNDALAPLDVEVCEIPLTPERILEALA 782          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: A0A2E7RH16_9PROT (Carbon monoxide dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7RH16_9PROT)

HSP 1 Score: 466 bits (1199), Expect = 2.430e-157
Identity = 234/263 (88.97%), Postives = 249/263 (94.68%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEAL 789
            EIGVDP KVK+VHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQ   ED+TL+DGMA+AG SSVS+EEVAKTWYLKPQ LPD+VDPRGLEVTEGYKTVQDTGTFSYACHAVKV+VD++ GN++LLDYVIVEDAGTMINPMIVDGQV GGTVQGIGTALFEEMPFD SGQPLASTLADYHLPVAGDIPPVRI HMETPSPLSRFGQKGIGESGAIGPP AIANAVNDAL+PLG EVSEIP+TPER+L  +
Sbjct:  516 EIGVDPKKVKVVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQCTREDITLEDGMAHAGKSSVSIEEVAKTWYLKPQQLPDDVDPRGLEVTEGYKTVQDTGTFSYACHAVKVAVDIKSGNIELLDYVIVEDAGTMINPMIVDGQVVGGTVQGIGTALFEEMPFDYSGQPLASTLADYHLPVAGDIPPVRITHMETPSPLSRFGQKGIGESGAIGPPAAIANAVNDALSPLGVEVSEIPMTPERVLSVI 778          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: K2J720_9PROT (Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=3 Tax=Oceanibaculum TaxID=659693 RepID=K2J720_9PROT)

HSP 1 Score: 440 bits (1132), Expect = 2.980e-147
Identity = 223/273 (81.68%), Postives = 243/273 (89.01%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEALAIGAGAKAAE 819
            EIGVDPAKVKLVHGDTAYTPYSTGTWGSRC VMAGGA G A AALG+R++ IAAHL+QA+ E+V L DG A AG+S +S+EEVA TWY KPQLLPD+VDPRGLE TEGYKTV+DTGTFSYACHAV VSVDL  G++ LLDYVIVEDAGTM+NPMIVDGQV+GGTVQGIGTALFEEMPFD +GQPLASTLADYHLPVA DIPP+RI HMETPSP+SRFGQKGIGESGAIGPP AIANAVNDALAPLGA V+EIPLTPER+L ALA      AAE
Sbjct:  516 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCAVMAGGATGTACAALGERMRKIAAHLMQAKPEEVVLADGFARAGSSQISIEEVAATWYRKPQLLPDDVDPRGLEATEGYKTVRDTGTFSYACHAVVVSVDLSLGHIQLLDYVIVEDAGTMLNPMIVDGQVYGGTVQGIGTALFEEMPFDAAGQPLASTLADYHLPVAADIPPIRILHMETPSPISRFGQKGIGESGAIGPPAAIANAVNDALAPLGAAVNEIPLTPERVLRALAEAQPKMAAE 788          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: A0A154WB07_9PROT (Carbon monoxide dehydrogenase n=1 Tax=Oceanibaculum pacificum TaxID=580166 RepID=A0A154WB07_9PROT)

HSP 1 Score: 435 bits (1119), Expect = 2.530e-145
Identity = 222/269 (82.53%), Postives = 240/269 (89.22%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEALAIGAGA 807
            EIG+DPAKVKLVHGDTAYTPYSTGTWGSRC VMAGGAVG A+A LGDRI+ IAAHLLQAR E+V L DG A  G+++VS+EEVA+TWY KPQLLPD+VDPRGLE TEGYKTV+DTGTFSYACHAV VSVDL+ G+V+LLDYVIVEDAGTMINPMIVDGQV GG  QGIGTALFEEM FD SGQPLASTLADYHLPVA DIP  RI HMETPSP+SRFGQKGIGESGAIGPP AIANAVNDALA LGAEV++IPLTPER+L ALA G  A
Sbjct:  516 EIGIDPAKVKLVHGDTAYTPYSTGTWGSRCAVMAGGAVGTAAAVLGDRIRRIAAHLLQARPEEVILTDGFAKVGSAAVSIEEVARTWYQKPQLLPDDVDPRGLEATEGYKTVRDTGTFSYACHAVVVSVDLQLGHVELLDYVIVEDAGTMINPMIVDGQVQGGLAQGIGTALFEEMQFDSSGQPLASTLADYHLPVASDIPRTRILHMETPSPISRFGQKGIGESGAIGPPAAIANAVNDALASLGAEVNQIPLTPERVLRALAQGKAA 784          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: UPI000E5C802D (xanthine dehydrogenase family protein molybdopterin-binding subunit n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI000E5C802D)

HSP 1 Score: 428 bits (1101), Expect = 1.470e-142
Identity = 216/264 (81.82%), Postives = 235/264 (89.02%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEALA 792
            EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAV AASAALG+RIK IAAHL+QA    V L DGMA AG S +S+ EVAKTWY KP LLPD+VDPRGLE TEGYKTV+DTGTFSYA HAV V VDL  G++ L+DYVIVEDAGTMINPM+VDGQV+GG VQGIGTALFEE+PFD +GQPLASTLADYHLPVA DIP +RI HMETPSPLSRFGQKGIGESGAIGPP AIANAVNDALAPLG E++E+P+TPER+L ALA
Sbjct:  521 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVAAASAALGERIKRIAAHLMQADTAQVVLADGMARAGGSEISIAEVAKTWYRKPHLLPDDVDPRGLEATEGYKTVKDTGTFSYAAHAVVVEVDLDLGDIRLVDYVIVEDAGTMINPMVVDGQVYGGAVQGIGTALFEEVPFDAAGQPLASTLADYHLPVAADIPAIRILHMETPSPLSRFGQKGIGESGAIGPPAAIANAVNDALAPLGVEIAEVPMTPERVLRALA 784          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: A0A2D7FE48_9HYPH (Carbon monoxide dehydrogenase n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FE48_9HYPH)

HSP 1 Score: 426 bits (1094), Expect = 1.650e-141
Identity = 210/268 (78.36%), Postives = 235/268 (87.69%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEALAIGAG 804
            E+G+ PAK+K+VHGDTAYTPYSTGTWGSRCIVMAGGAVG A+AA+GDRI+ IA HLLQA+ +D+ LQ G A AG + +S+EEVA TWY KP  LP ++DPRGLE TEGYKT  DTGTFSYACHAVKVSVDL  G ++LLDYV+VEDAGTMINPM+VDGQV GGTVQGIGTALFEEMPFD  GQPLASTLADYHLPVA DIPP+RI HMETPSPLS++GQKGIGESGAIGPP AIANAVNDAL PLGA V+EIP+TPER+L ALA  AG
Sbjct:  519 ELGISPAKIKVVHGDTAYTPYSTGTWGSRCIVMAGGAVGTAAAAIGDRIRAIAGHLLQAKPDDIVLQGGFARAGDAEISLEEVAHTWYRKPHFLPPDMDPRGLEATEGYKTKPDTGTFSYACHAVKVSVDLDLGQIELLDYVVVEDAGTMINPMVVDGQVLGGTVQGIGTALFEEMPFDAGGQPLASTLADYHLPVAADIPPIRIVHMETPSPLSKYGQKGIGESGAIGPPAAIANAVNDALRPLGARVNEIPMTPERVLSALATAAG 786          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: A0A2D9I5V8_9PROT (Carbon monoxide dehydrogenase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D9I5V8_9PROT)

HSP 1 Score: 423 bits (1087), Expect = 1.900e-140
Identity = 211/263 (80.23%), Postives = 235/263 (89.35%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEAL 789
            EIG+DP K+KLVHGDTAYTPYSTGTWGSRCIVMAGGAVG A  +LG+RI  IA HLLQA   ++ L++GMA  GTS++S+EEVAKTWYLKPQLLPD+VDPRGLEV EGYKTV+DTGTFSYACHAVKV VDL  G+V LLDYVIVEDAGTMINPM+VDGQV+GG  QGIGTALFEEM FD SGQPLASTLADYHLP+A D+P +RI HMETPSPLSRFGQKGIGESGAIGPP AIANAVNDAL+ LGAEVSE+P+TPER+L A+
Sbjct:  516 EIGIDPKKIKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGTACVSLGERISKIAGHLLQADPAEIVLENGMARVGTSAISIEEVAKTWYLKPQLLPDDVDPRGLEVVEGYKTVKDTGTFSYACHAVKVEVDLDLGHVRLLDYVIVEDAGTMINPMVVDGQVYGGAAQGIGTALFEEMCFDASGQPLASTLADYHLPLASDLPAIRIEHMETPSPLSRFGQKGIGESGAIGPPAAIANAVNDALSFLGAEVSEVPITPERVLAAI 778          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: A0A1Y6C6T6_9HYPH (Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6C6T6_9HYPH)

HSP 1 Score: 422 bits (1085), Expect = 3.400e-140
Identity = 215/264 (81.44%), Postives = 232/264 (87.88%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEALA 792
            E+GVDPAKVKLVHGDTA TPYSTGTWGSRC VMAGGAV AASAAL  R++ IA HLLQAR ++V L DG+A AG + VS+EE+A+TWYLKPQLLP + DPRGLE TEGYKT +DTGTFSYACHAV V VDL  G V LLDY IVEDAGTMINPM+VDGQV GGTVQGIGTALFEEMPFD +GQPLASTLADYHLPVA DIP +RI HMETPSPLSRFGQKGIGESGAIGPP AIANAVNDALA LGAEV+EIPLTPER+L ALA
Sbjct:  518 ELGVDPAKVKLVHGDTALTPYSTGTWGSRCAVMAGGAVAAASAALAGRVRAIAGHLLQARPDEVVLADGVARAGGAEVSIEEIARTWYLKPQLLPPDADPRGLEATEGYKTARDTGTFSYACHAVTVEVDLDLGQVRLLDYAIVEDAGTMINPMVVDGQVLGGTVQGIGTALFEEMPFDAAGQPLASTLADYHLPVASDIPAIRILHMETPSPLSRFGQKGIGESGAIGPPAAIANAVNDALATLGAEVAEIPLTPERVLRALA 781          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: A0A3S2VLN5_9PROT (Xanthine dehydrogenase family protein molybdopterin-binding subunit n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A3S2VLN5_9PROT)

HSP 1 Score: 418 bits (1075), Expect = 1.080e-138
Identity = 211/262 (80.53%), Postives = 232/262 (88.55%), Query Frame = 1
Query:    4 IGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEAL 789
            +G+   K+K+VHGDTAYTPYSTGTWGSRCIVMAGGAV  A  ALG RI++IA HLLQ+  +DV L+DG+A AGT+SVS+EEVAKTWYLKPQLLPD VDPRGLE TEGYKTVQDTGTFSYACHAVKVSVDL  G+V LLDYVI EDAGTMINPMIVDGQV GG VQGIGTALFEEMPF  +GQP+ASTLADYHLPVA DIP +RI HMETPSPLS FGQKGIGESGAIGPP AIANAVNDAL+ LGAEV+++P+TPERIL AL
Sbjct:  518 LGITIEKIKVVHGDTAYTPYSTGTWGSRCIVMAGGAVATACDALGQRIRNIAGHLLQSENDDVALEDGVARAGTASVSIEEVAKTWYLKPQLLPDGVDPRGLEATEGYKTVQDTGTFSYACHAVKVSVDLDLGHVKLLDYVIAEDAGTMINPMIVDGQVLGGAVQGIGTALFEEMPFSETGQPMASTLADYHLPVAADIPDIRIIHMETPSPLSYFGQKGIGESGAIGPPAAIANAVNDALSSLGAEVAQVPMTPERILAAL 779          
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Match: A0A6L8W7V1_9PROT (Molybdopterin-dependent oxidoreductase n=3 Tax=Sneathiella TaxID=510690 RepID=A0A6L8W7V1_9PROT)

HSP 1 Score: 410 bits (1055), Expect = 1.190e-135
Identity = 202/264 (76.52%), Postives = 234/264 (88.64%), Query Frame = 1
Query:    1 EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIKHIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDPRGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTMINPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDIPPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVSEIPLTPERILEALA 792
            EIG+DP K+KLVHGDTA TPYSTGTWGSRCIVMAGGAVG+A   LG+R++ IA HL+QA   D+ L+ GMA AG+S++S+EEVA+TWYLKPQLLPD+VDPRGL+V  GYKT +DTGTFSYACHAVKV VD+  G+V LLDYVI+EDAGTMINPM+VDGQV+GG  QGIGTALFEEM FD SGQPLASTLADYHLP+A D+P +RI HMETPSPLSRFGQKGIGESGAIGPP AIANAVNDAL+ +GAEV+E+P+TPER+L A+A
Sbjct:  516 EIGIDPEKIKLVHGDTASTPYSTGTWGSRCIVMAGGAVGSACELLGERVRKIAGHLMQADPADIKLEGGMASAGSSTISIEEVARTWYLKPQLLPDDVDPRGLDVVAGYKTTKDTGTFSYACHAVKVEVDMDLGHVRLLDYVIIEDAGTMINPMVVDGQVYGGAAQGIGTALFEEMCFDASGQPLASTLADYHLPLASDLPNIRIEHMETPSPLSRFGQKGIGESGAIGPPAAIANAVNDALSFIGAEVAEVPMTPERVLSAIA 779          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102197.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FMV2_9PROT8.850e-16493.18Carbon monoxide dehydrogenase n=1 Tax=Rhodospirill... [more]
A0A2E7RH16_9PROT2.430e-15788.97Carbon monoxide dehydrogenase n=3 Tax=Alphaproteob... [more]
K2J720_9PROT2.980e-14781.68Xanthine dehydrogenase, molybdenum binding subunit... [more]
A0A154WB07_9PROT2.530e-14582.53Carbon monoxide dehydrogenase n=1 Tax=Oceanibaculu... [more]
UPI000E5C802D1.470e-14281.82xanthine dehydrogenase family protein molybdopteri... [more]
A0A2D7FE48_9HYPH1.650e-14178.36Carbon monoxide dehydrogenase n=2 Tax=Hyphomicrobi... [more]
A0A2D9I5V8_9PROT1.900e-14080.23Carbon monoxide dehydrogenase n=2 Tax=Rhodospirill... [more]
A0A1Y6C6T6_9HYPH3.400e-14081.44Xanthine dehydrogenase, molybdenum binding subunit... [more]
A0A3S2VLN5_9PROT1.080e-13880.53Xanthine dehydrogenase family protein molybdopteri... [more]
A0A6L8W7V1_9PROT1.190e-13576.52Molybdopterin-dependent oxidoreductase n=3 Tax=Sne... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102197contigL-digitata_M_contig102197:86..916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1207063.P24_01030
PFAMsAld_Xan_dh_C,Ald_Xan_dh_C2
Model size831
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.89e-148
EggNOG OGsCOG1529@1|root,COG1529@2|Bacteria,1MUEA@1224|Proteobacteria,2TQMW@28211|Alphaproteobacteria,2JRB6@204441|Rhodospirillales
DescriptionAldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
Cds size831
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406626.9026785-CDS-L-digitata_M_contig102197:85..9161682406626.9026785-CDS-L-digitata_M_contig102197:85..916Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102197 86..916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102197.1.1prot_L-digitata_M_contig102197.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102197 86..916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102197.1.1

>prot_L-digitata_M_contig102197.1.1 ID=prot_L-digitata_M_contig102197.1.1|Name=mRNA_L-digitata_M_contig102197.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=277bp
EIGVDPAKVKLVHGDTAYTPYSTGTWGSRCIVMAGGAVGAASAALGDRIK
HIAAHLLQARAEDVTLQDGMAYAGTSSVSVEEVAKTWYLKPQLLPDNVDP
RGLEVTEGYKTVQDTGTFSYACHAVKVSVDLRFGNVDLLDYVIVEDAGTM
INPMIVDGQVHGGTVQGIGTALFEEMPFDRSGQPLASTLADYHLPVAGDI
PPVRIFHMETPSPLSRFGQKGIGESGAIGPPGAIANAVNDALAPLGAEVS
EIPLTPERILEALAIGAGAKAAEKSA*
back to top

mRNA from alignment at L-digitata_M_contig102197:86..916-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102197.1.1 ID=mRNA_L-digitata_M_contig102197.1.1|Name=mRNA_L-digitata_M_contig102197.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=831bp|location=Sequence derived from alignment at L-digitata_M_contig102197:86..916- (Laminaria digitata LdigPH10_18mv male)
GAAATCGGCGTCGACCCGGCGAAGGTAAAACTCGTCCATGGCGATACAGC CTATACGCCGTATTCAACCGGGACCTGGGGGTCGCGCTGCATTGTGATGG CGGGCGGGGCGGTCGGCGCCGCGAGCGCGGCACTTGGCGACCGCATCAAA CATATTGCCGCCCATCTGCTTCAGGCCAGGGCCGAAGACGTGACCCTGCA GGACGGGATGGCCTATGCGGGCACCAGTTCCGTGTCGGTCGAAGAGGTCG CCAAGACCTGGTACCTGAAACCGCAGCTTTTGCCGGATAACGTCGATCCG CGCGGACTGGAAGTGACGGAGGGATATAAAACGGTCCAGGATACCGGCAC GTTTTCCTATGCCTGCCATGCCGTCAAGGTCAGCGTCGATCTGCGGTTCG GCAATGTCGATCTGCTGGATTACGTGATTGTCGAGGATGCCGGCACCATG ATCAATCCGATGATCGTGGACGGTCAGGTGCATGGCGGCACGGTGCAGGG GATCGGCACCGCCCTGTTCGAAGAAATGCCGTTCGACCGGTCGGGGCAGC CGTTGGCCTCGACGCTGGCCGATTATCATCTGCCCGTCGCCGGCGATATC CCGCCGGTCCGGATTTTTCATATGGAGACGCCGTCGCCGCTCAGCCGGTT CGGTCAGAAAGGGATTGGTGAAAGCGGCGCGATCGGGCCGCCCGGGGCCA TTGCGAATGCGGTGAACGATGCGCTTGCCCCGCTCGGCGCGGAAGTGAGT GAGATACCGCTGACGCCGGAACGCATTCTCGAAGCGCTGGCCATAGGCGC CGGGGCGAAAGCTGCGGAGAAAAGCGCATGA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig102197:86..916-

>mRNA_L-digitata_M_contig102197.1.1 ID=mRNA_L-digitata_M_contig102197.1.1|Name=mRNA_L-digitata_M_contig102197.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=831bp|location=Sequence derived from alignment at L-digitata_M_contig102197:86..916- (Laminaria digitata LdigPH10_18mv male)
GAAATCGGCGTCGACCCGGCGAAGGTAAAACTCGTCCATGGCGATACAGC
CTATACGCCGTATTCAACCGGGACCTGGGGGTCGCGCTGCATTGTGATGG
CGGGCGGGGCGGTCGGCGCCGCGAGCGCGGCACTTGGCGACCGCATCAAA
CATATTGCCGCCCATCTGCTTCAGGCCAGGGCCGAAGACGTGACCCTGCA
GGACGGGATGGCCTATGCGGGCACCAGTTCCGTGTCGGTCGAAGAGGTCG
CCAAGACCTGGTACCTGAAACCGCAGCTTTTGCCGGATAACGTCGATCCG
CGCGGACTGGAAGTGACGGAGGGATATAAAACGGTCCAGGATACCGGCAC
GTTTTCCTATGCCTGCCATGCCGTCAAGGTCAGCGTCGATCTGCGGTTCG
GCAATGTCGATCTGCTGGATTACGTGATTGTCGAGGATGCCGGCACCATG
ATCAATCCGATGATCGTGGACGGTCAGGTGCATGGCGGCACGGTGCAGGG
GATCGGCACCGCCCTGTTCGAAGAAATGCCGTTCGACCGGTCGGGGCAGC
CGTTGGCCTCGACGCTGGCCGATTATCATCTGCCCGTCGCCGGCGATATC
CCGCCGGTCCGGATTTTTCATATGGAGACGCCGTCGCCGCTCAGCCGGTT
CGGTCAGAAAGGGATTGGTGAAAGCGGCGCGATCGGGCCGCCCGGGGCCA
TTGCGAATGCGGTGAACGATGCGCTTGCCCCGCTCGGCGCGGAAGTGAGT
GAGATACCGCTGACGCCGGAACGCATTCTCGAAGCGCTGGCCATAGGCGC
CGGGGCGAAAGCTGCGGAGAAAAGCGCATGA
back to top