mRNA_L-digitata_M_contig10207.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: D7G7M5_ECTSI (Delta protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M5_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 1.890e-9 Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 28 VAVADDCDP-NPCENGGSCSADPPGGHMCSCASGYGGMACQIDT 156
A + CD NPC+NGGSCS DP GG+ CSCA G+ GM CQI+T
Sbjct: 359 AASSSSCDGGNPCQNGGSCSTDPAGGYFCSCAEGFAGMVCQINT 402
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: A0A5C6PR10_9TELE (Hyaluronan-binding protein 2 n=4 Tax=Takifugu TaxID=31032 RepID=A0A5C6PR10_9TELE) HSP 1 Score: 53.5 bits (127), Expect = 7.250e-7 Identity = 23/43 (53.49%), Postives = 26/43 (60.47%), Query Frame = 1
Query: 19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
F + V D C+PNPC NGG CS P GG +CSC Y G CQ
Sbjct: 64 FELLEVTDQCEPNPCLNGGVCSVGPDGGFVCSCPELYSGRKCQ 106
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: A0A674N4C3_TAKRU (Uncharacterized protein n=2 Tax=Takifugu rubripes TaxID=31033 RepID=A0A674N4C3_TAKRU) HSP 1 Score: 53.5 bits (127), Expect = 7.250e-7 Identity = 23/43 (53.49%), Postives = 26/43 (60.47%), Query Frame = 1
Query: 19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
F + V D C+PNPC NGG CS P GG +CSC Y G CQ
Sbjct: 70 FELLEVTDQCEPNPCLNGGVCSVGPDGGFVCSCPELYSGRKCQ 112
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: A0A2K6T1Q2_SAIBB (FAT atypical cadherin 1 n=30 Tax=Euarchontoglires TaxID=314146 RepID=A0A2K6T1Q2_SAIBB) HSP 1 Score: 53.5 bits (127), Expect = 7.340e-7 Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 1
Query: 1 MTRFDPFPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQIDTS 159
+ P F+A A+DC NPC+NGG C+ P GG+ C C++ Y G C+I +
Sbjct: 4002 LVEVSPGCFLAAAEDCSSNPCQNGGLCNPSPAGGYYCKCSALYIGTYCEISVN 4054
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: A0A7M7P1I8_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7P1I8_STRPU) HSP 1 Score: 53.1 bits (126), Expect = 9.910e-7 Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 19 FPFVAV-ADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMAC 144
F F V DDCDPNPC NGGSC+ D G H C+C +GY GM C
Sbjct: 264 FKFSIVDIDDCDPNPCSNGGSCT-DRVGSHTCNCTAGYTGMNC 305
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI001FB6C10A (hyaluronan-binding protein 2-like n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB6C10A) HSP 1 Score: 52.4 bits (124), Expect = 1.860e-6 Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1
Query: 19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
+ + ++D+CDPNPC NGG+CS+ GG CSC Y G CQ
Sbjct: 64 YGLLDISDECDPNPCLNGGACSSSTDGGFQCSCPEPYTGKKCQ 106
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI000F5E4521 (hyaluronan-binding protein 2-like isoform X1 n=2 Tax=Larimichthys crocea TaxID=215358 RepID=UPI000F5E4521) HSP 1 Score: 51.2 bits (121), Expect = 4.750e-6 Identity = 21/43 (48.84%), Postives = 25/43 (58.14%), Query Frame = 1
Query: 19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
+ + + DDCDPNPC NGG C GG +CSC Y G CQ
Sbjct: 57 YELLDITDDCDPNPCLNGGRCDTTADGGFVCSCPEPYTGKKCQ 99
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI001C351BCD ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C351BCD) HSP 1 Score: 51.2 bits (121), Expect = 4.770e-6 Identity = 21/43 (48.84%), Postives = 25/43 (58.14%), Query Frame = 1
Query: 19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQ 147
+ + + DDCDPNPC NGG C GG +CSC Y G CQ
Sbjct: 57 YELLDITDDCDPNPCLNGGRCDTTADGGFVCSCPEPYTGKKCQ 99
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI0018D75212 (neurogenic locus notch homolog protein 2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D75212) HSP 1 Score: 51.2 bits (121), Expect = 4.800e-6 Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 1
Query: 1 MTRFDPFPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQID 153
+ D P V D+CDPNPC NGGSC D ++C+C G+ G C+ID
Sbjct: 1588 QSSLDVDPAVTARDNCDPNPCMNGGSCQ-DGTNSYVCTCVEGFTGNECEID 1637
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Match: UPI0012ED98C9 (hyaluronan-binding protein 2-like n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012ED98C9) HSP 1 Score: 50.8 bits (120), Expect = 5.530e-6 Identity = 23/47 (48.94%), Postives = 27/47 (57.45%), Query Frame = 1
Query: 19 FPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQIDTS 159
+ + VAD+CDPNPC NGGSC G C C Y G CQI T+
Sbjct: 68 YELMDVADECDPNPCLNGGSCDHAADGSFKCLCPEPYSGKKCQIVTN 114 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10207.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10207.1.1 >prot_L-digitata_M_contig10207.1.1 ID=prot_L-digitata_M_contig10207.1.1|Name=mRNA_L-digitata_M_contig10207.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=54bp MTRFDPFPFVAVADDCDPNPCENGGSCSADPPGGHMCSCASGYGGMACQIback to top mRNA from alignment at L-digitata_M_contig10207:466..627+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10207.1.1 ID=mRNA_L-digitata_M_contig10207.1.1|Name=mRNA_L-digitata_M_contig10207.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=162bp|location=Sequence derived from alignment at L-digitata_M_contig10207:466..627+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10207:466..627+ >mRNA_L-digitata_M_contig10207.1.1 ID=mRNA_L-digitata_M_contig10207.1.1|Name=mRNA_L-digitata_M_contig10207.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=162bp|location=Sequence derived from alignment at L-digitata_M_contig10207:466..627+ (Laminaria digitata LdigPH10_18mv male)back to top |