mRNA_L-digitata_M_contig102063.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102063.2.1
Unique NamemRNA_L-digitata_M_contig102063.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: A0A2D8G757_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G757_9PROT)

HSP 1 Score: 141 bits (355), Expect = 1.160e-39
Identity = 68/75 (90.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            MMKLPK+FL+GSIPPLITPF+NG+VDYDAYAGLVEFQV+NGSHGILVNGTTSEPASLTVEERNRIVD+AIEA AG
Sbjct:    1 MMKLPKNFLRGSIPPLITPFRNGKVDYDAYAGLVEFQVRNGSHGILVNGTTSEPASLTVEERNRIVDIAIEACAG 75
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BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: A0A2D8PR20_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PR20_9PROT)

HSP 1 Score: 140 bits (353), Expect = 2.430e-39
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            MMKLPK FL+GSIPPLITPF+NG+VDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNR+VDVAI+A AG
Sbjct:    1 MMKLPKTFLRGSIPPLITPFRNGKVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRLVDVAIDAAAG 75
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BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: A0A2E6GQM9_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GQM9_9PROT)

HSP 1 Score: 134 bits (336), Expect = 8.440e-37
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            MM+LP+ FL+GSIPPLITPFK G VDYDAYAGLVEFQVKNGSHGILVNGTTSEP++LTVEERNR VDVAIEA AG
Sbjct:    1 MMRLPRKFLRGSIPPLITPFKKGEVDYDAYAGLVEFQVKNGSHGILVNGTTSEPSTLTVEERNRTVDVAIEAAAG 75
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BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: A0A2E5V3G1_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E5V3G1_9PROT)

HSP 1 Score: 133 bits (335), Expect = 1.190e-36
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            MM+LPK FLKGSIPPLITP +N R+DYDAYAGLVEFQ+KNGSHGILVNGTTSEP++LT+EERNRIVDVAIEA  G
Sbjct:    1 MMRLPKSFLKGSIPPLITPIRNNRIDYDAYAGLVEFQIKNGSHGILVNGTTSEPSTLTIEERNRIVDVAIEAADG 75
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BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: A0A7R7CJA9_9HYPH (4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A7R7CJA9_9HYPH)

HSP 1 Score: 132 bits (333), Expect = 1.980e-36
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            M+KL KDFLKGSIPPL+TPF+NG VDYDAYAGLVEFQ + GSHGILVNGTTSEP+SLTVEERNRIVDVA+EA AG
Sbjct:    1 MLKLDKDFLKGSIPPLVTPFRNGAVDYDAYAGLVEFQRREGSHGILVNGTTSEPSSLTVEERNRIVDVAVEAAAG 75
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BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: UPI0009E25ABE (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Nitratireductor soli TaxID=1670619 RepID=UPI0009E25ABE)

HSP 1 Score: 131 bits (330), Expect = 6.210e-36
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            M+ + KDFLKGSIPPL+TPFK G VDYDAYAGLVEFQVK GSHGILVNGTTSEP+SLTV+ERNRIVDVA+EA AG
Sbjct:    1 MLSIDKDFLKGSIPPLVTPFKEGAVDYDAYAGLVEFQVKEGSHGILVNGTTSEPSSLTVDERNRIVDVAVEAAAG 75
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BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: A0A2S6Q5L4_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q5L4_9PROT)

HSP 1 Score: 131 bits (329), Expect = 9.350e-36
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            M+KLPK+FL GSIPPLITPF+NG VD  AYAGLVEFQVKNGSHGILVNGTTSEPASLT+EERNRIVDVAI+A AG
Sbjct:    1 MIKLPKNFLCGSIPPLITPFRNGEVDLKAYAGLVEFQVKNGSHGILVNGTTSEPASLTIEERNRIVDVAIKAAAG 75
[Close]
BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: A0A2E7QUU4_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QUU4_9PROT)

HSP 1 Score: 130 bits (327), Expect = 1.860e-35
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEA 216
            MM+LPK+FLKGSIPPLITPF+NG+VDYDAYAGLVEFQVKNGSHGILV GTTSEP++LT +ERNR VDVA+EA
Sbjct:    1 MMRLPKNFLKGSIPPLITPFRNGKVDYDAYAGLVEFQVKNGSHGILVTGTTSEPSTLTTDERNRCVDVAVEA 72
[Close]
BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: UPI0012EEE0E3 (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Mesorhizobium xinjiangense TaxID=2678685 RepID=UPI0012EEE0E3)

HSP 1 Score: 129 bits (324), Expect = 4.370e-35
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            M+ L KDFLKGSIPPL+TPF++G VDYDAYAGLVEFQ++ GSHGILVNGTTSEP+SLTVEERN IVDVA+EA AG
Sbjct:    1 MLSLDKDFLKGSIPPLVTPFRDGAVDYDAYAGLVEFQIREGSHGILVNGTTSEPSSLTVEERNHIVDVAVEAAAG 75
[Close]
BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Match: A0A6N7FBY0_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FBY0_9PROT)

HSP 1 Score: 127 bits (319), Expect = 2.890e-34
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGTTSEPASLTVEERNRIVDVAIEANAG 225
            MMKLPK FLKGSIPP+ITPF+NG+VDYDAYA LVEFQV+NGSHGILV GTTSEP++L+VEERNR VDVA+EA  G
Sbjct:    1 MMKLPKPFLKGSIPPIITPFRNGKVDYDAYAALVEFQVRNGSHGILVCGTTSEPSTLSVEERNRCVDVAVEAAHG 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102063.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8G757_9PROT1.160e-3990.674-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
A0A2D8PR20_9PROT2.430e-3990.674-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=... [more]
A0A2E6GQM9_9PROT8.440e-3786.674-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
A0A2E5V3G1_9PROT1.190e-3684.004-hydroxy-tetrahydrodipicolinate synthase n=3 Tax=... [more]
A0A7R7CJA9_9HYPH1.980e-3685.334-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=... [more]
UPI0009E25ABE6.210e-3684.004-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
A0A2S6Q5L4_9PROT9.350e-3686.674-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
A0A2E7QUU4_9PROT1.860e-3584.724-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
UPI0012EEE0E34.370e-3581.334-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
A0A6N7FBY0_9PROT2.890e-3481.334-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102063contigL-digitata_M_contig102063:694..918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1003200.AXXA_06238
PFAMsDHDPS
Model size225
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC03062,RC03063
KEGG koko:K01714
KEGG ReactionR10147
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-27
EggNOG OGsCOG0329@1|root,COG0329@2|Bacteria,1MUCM@1224|Proteobacteria,2VIQ4@28216|Betaproteobacteria,3T1JC@506|Alcaligenaceae
EC4.3.3.7
DescriptionCatalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Cds size225
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406625.4280126-CDS-L-digitata_M_contig102063:693..9181682406625.4280126-CDS-L-digitata_M_contig102063:693..918Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102063 694..918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102063.2.1prot_L-digitata_M_contig102063.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102063 694..918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102063.2.1

>prot_L-digitata_M_contig102063.2.1 ID=prot_L-digitata_M_contig102063.2.1|Name=mRNA_L-digitata_M_contig102063.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=75bp
MMKLPKDFLKGSIPPLITPFKNGRVDYDAYAGLVEFQVKNGSHGILVNGT
TSEPASLTVEERNRIVDVAIEANAG
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mRNA from alignment at L-digitata_M_contig102063:694..918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102063.2.1 ID=mRNA_L-digitata_M_contig102063.2.1|Name=mRNA_L-digitata_M_contig102063.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=225bp|location=Sequence derived from alignment at L-digitata_M_contig102063:694..918+ (Laminaria digitata LdigPH10_18mv male)
ATGATGAAACTGCCCAAGGACTTCCTGAAGGGGTCCATTCCGCCGCTGAT
CACACCGTTCAAAAACGGCAGGGTCGATTACGACGCCTATGCCGGTCTGG
TCGAGTTCCAGGTCAAGAACGGCTCGCACGGTATCCTGGTCAACGGCACC
ACGTCGGAGCCCGCATCGCTGACGGTCGAGGAACGCAACCGCATCGTCGA
TGTCGCGATCGAGGCCAATGCCGGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig102063:694..918+

>mRNA_L-digitata_M_contig102063.2.1 ID=mRNA_L-digitata_M_contig102063.2.1|Name=mRNA_L-digitata_M_contig102063.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=225bp|location=Sequence derived from alignment at L-digitata_M_contig102063:694..918+ (Laminaria digitata LdigPH10_18mv male)
ATGATGAAACTGCCCAAGGACTTCCTGAAGGGGTCCATTCCGCCGCTGAT
CACACCGTTCAAAAACGGCAGGGTCGATTACGACGCCTATGCCGGTCTGG
TCGAGTTCCAGGTCAAGAACGGCTCGCACGGTATCCTGGTCAACGGCACC
ACGTCGGAGCCCGCATCGCTGACGGTCGAGGAACGCAACCGCATCGTCGA
TGTCGCGATCGAGGCCAATGCCGGC
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