mRNA_L-digitata_M_contig102061.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102061.1.1
Unique NamemRNA_L-digitata_M_contig102061.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: A0A2E6QMN1_9PROT (Heme lyase NrfEFG subunit NrfE n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QMN1_9PROT)

HSP 1 Score: 392 bits (1006), Expect = 2.710e-130
Identity = 186/249 (74.70%), Postives = 217/249 (87.15%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MI E+GH+A+VLAL V+IVQ  LP++GAQRG  A  A+ARPAA+ QF L+++AF+ALT A+V SDFSVLNV +NSH+ KPLLYKISGVWGNHEGS+LLW++ILA FG  V+  G NLPP+LR RVI+IQG+IGVGFL   +  SNPF+R+FP P  G  LNPLLQDPGLAFHPPFLYLGYVGFS+AF+FA+AALIEG+VDAAWARWVRPWTLAAW+ LTVGIAMGSWWA+YELGWGGWWFWDPVENASF
Sbjct:    1 MIVEIGHYALVLALGVAIVQSALPMIGAQRGDAAWMAVARPAALGQFGLVLIAFIALTHAYVTSDFSVLNVAENSHSAKPLLYKISGVWGNHEGSMLLWIMILATFGMAVSVFGGNLPPALRARVISIQGMIGVGFLTFTLLTSNPFQRLFPAPIDGNDLNPLLQDPGLAFHPPFLYLGYVGFSVAFAFAIAALIEGRVDAAWARWVRPWTLAAWSFLTVGIAMGSWWAYYELGWGGWWFWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: A0A2U1WUW7_9PROT (Cytochrome C biogenesis protein CcmF (Fragment) n=1 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1WUW7_9PROT)

HSP 1 Score: 375 bits (962), Expect = 2.830e-129
Identity = 181/249 (72.69%), Postives = 207/249 (83.13%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MI E+GH+A+++A+AV++ Q  +PLVGAQRG  AL A  R AA  Q LL+  AF AL  A+V SDFSV NV QNSHTDKP+LYK+SG+W NHEGSLLLW+ ILA FG  VAT G NLP  LR R +A+Q +I VGFLL ++  SNPFER+ PVP  G+GLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEG+VDAAWARWVRPWTLAAWT LTVGI +GSWWA+YELGWGGWW+WDPVENASF
Sbjct:    1 MITEIGHYALIMAVAVAMAQAIVPLVGAQRGDRALMAFGRSAAFAQLLLVGTAFGALMHAYVTSDFSVANVAQNSHTDKPMLYKVSGLWANHEGSLLLWITILAGFGAAVATFGRNLPAGLRARTLAVQAMIAVGFLLFILLTSNPFERLDPVPLNGSGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGRVDAAWARWVRPWTLAAWTFLTVGIGLGSWWAYYELGWGGWWYWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: A0A7V7JLR5_9PROT (Heme lyase CcmF/NrfE family subunit (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7JLR5_9PROT)

HSP 1 Score: 379 bits (974), Expect = 7.030e-129
Identity = 179/249 (71.89%), Postives = 211/249 (84.74%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MIAE GHFA++LAL V+IVQ T+P++GA RG  A   +ARPAA  QF L+ +AF AL +A+V SDFS+LNV QNSHTDKPLLYK+SGVWGNHEGS+LLWV+ILA +G  VA  G NLPP+LR R +A+Q +I VGF+L ++  SNPF R+ PVP  G GLNPLLQDPGLAFHPPFLYLGYVGFS+A+SFA+AALIEG+VDAAWARWVRPWTL AW +LT+GIAMGSWWA+Y LGWGGWW+WDPVENASF
Sbjct:    1 MIAETGHFALILALLVAIVQATIPMIGAARGDRAWMDLARPAAYAQFALVAMAFAALVVAYVTSDFSLLNVAQNSHTDKPLLYKVSGVWGNHEGSMLLWVLILAIYGMAVAAAGGNLPPALRARALAVQAMIAVGFILFILLTSNPFVRLDPVPFNGNGLNPLLQDPGLAFHPPFLYLGYVGFSMAYSFAIAALIEGRVDAAWARWVRPWTLVAWCSLTLGIAMGSWWAYYTLGWGGWWYWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: UPI00115D1786 (heme lyase CcmF/NrfE family subunit n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D1786)

HSP 1 Score: 386 bits (991), Expect = 4.900e-128
Identity = 184/249 (73.90%), Postives = 212/249 (85.14%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MI E+GH+A+VLAL V+IVQ T+PL+GA R   A   +ARPAA++QFL + +AF ALT AFV SDFSVLNV QNSHTDKP+LYK+SGVWGNHEGSLL W+  L  FG  VA  G NLPPSLR RV+A+Q +I VGFLL ++F SNPFER+ P P+ G+GLNPLLQDPGLAFHPPFLY GYVGFSIAFSFA+AAL+EGKVDAAWARWVRPWTLAAW  LT+GIA+GSWWA+YELGWGGWW+WDPVENASF
Sbjct:    1 MIPEIGHYALVLALFVAIVQATVPLIGAHRNDAAWMEVARPAALVQFLCVAVAFAALTHAFVVSDFSVLNVAQNSHTDKPMLYKVSGVWGNHEGSLLFWITTLGLFGLMVALFGRNLPPSLRARVLAVQAMITVGFLLFVLFTSNPFERLDPAPANGSGLNPLLQDPGLAFHPPFLYFGYVGFSIAFSFAIAALLEGKVDAAWARWVRPWTLAAWVCLTLGIALGSWWAYYELGWGGWWYWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: A0A4R3JEU5_9PROT (Cytochrome c-type biogenesis protein CcmF n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3JEU5_9PROT)

HSP 1 Score: 385 bits (989), Expect = 9.800e-128
Identity = 186/249 (74.70%), Postives = 210/249 (84.34%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MI E GHFA++LAL V++ Q T+PL GAQRG  AL A +R AA +QF L+ +AF ALT A   SDFSVLNV  NSH+DKP+LYKISGVWGNHEGS+LLWV+ILA +G  VA  G NLPP+LR RV+AIQ LI VGF L ++F SNPF R+FP P+ G GLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFA+AALIEG+VDAAWARWVRPWTLAAWT LTVGI +GSWWA+YELGWGGWWFWDPVENASF
Sbjct:    1 MIVETGHFALILALMVALFQATVPLWGAQRGDGALMAASRSAAALQFALVAIAFAALTYAHATSDFSVLNVVNNSHSDKPMLYKISGVWGNHEGSMLLWVLILALYGIAVAVFGRNLPPALRARVLAIQALIAVGFYLFILFTSNPFVRIFPAPANGQGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAIAALIEGRVDAAWARWVRPWTLAAWTFLTVGIGLGSWWAYYELGWGGWWFWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: A0A2U1VAH7_9PROT (Cytochrome C biogenesis protein CcmF (Fragment) n=1 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1VAH7_9PROT)

HSP 1 Score: 368 bits (945), Expect = 1.100e-126
Identity = 178/249 (71.49%), Postives = 206/249 (82.73%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MI ELGH+A+VL L V++VQ TLP+VGA  G  A   +ARPAA  Q  ++ +A+ ALT A V SDFSVLNV  NSH+ KP+LYK+SGVWGNHEGS++LWVV+LAAFG  VAT G NLPP+L+ RV+A+QG+I VGFLL ++  SNPF RVFP P  G  LNPLLQDPGLAFHPPFLY GYVGFS+AFSFAVAALIEG+VD AWARWVRPWTLAAW  LT GIA+GSWWA+YELGWGGWW+WDPVENASF
Sbjct:    1 MIPELGHYALVLTLFVALVQSTLPMVGAATGNRAWMNVARPAAFAQVTMIGVAYAALTWAHVVSDFSVLNVVNNSHSLKPMLYKVSGVWGNHEGSMVLWVVMLAAFGAAVATFGRNLPPTLQARVLAVQGIIAVGFLLFILITSNPFTRVFPAPLDGHDLNPLLQDPGLAFHPPFLYAGYVGFSMAFSFAVAALIEGRVDPAWARWVRPWTLAAWICLTAGIALGSWWAYYELGWGGWWYWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: A0A6J4FEY5_9PROT (Heme lyase, CcmF subunit n=1 Tax=Magnetospirillum sp. UT-4 TaxID=2681467 RepID=A0A6J4FEY5_9PROT)

HSP 1 Score: 382 bits (980), Expect = 2.090e-126
Identity = 183/249 (73.49%), Postives = 212/249 (85.14%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MIAE+GHFA+VLALAV+ VQ  +PLVGA+RG  A   +A PAA+ Q +L+ +AF ALT A+V SDFS+LNV QNSHTDKP+LYK+SGVWGNHEGSLLLW+ ILA FG  V   G NLPP+L+ R +A+Q LI VGFL  ++F SNPFER+ P P  G+GLNPLLQDPGLAFHPPFLYLGYVGFS+AFSFA+AALIEGKVDAAWARWVRPWTLAAW  LT+GIA+GSWWA+YELGWGGWW+WDPVENASF
Sbjct:    1 MIAEIGHFALVLALAVACVQAVVPLVGAERGERAWMDLAGPAAVAQLVLVGIAFAALTHAYVTSDFSLLNVAQNSHTDKPMLYKVSGVWGNHEGSLLLWITILALFGAAVTAFGGNLPPTLKARALAVQALITVGFLAFILFTSNPFERLDPPPMNGSGLNPLLQDPGLAFHPPFLYLGYVGFSMAFSFAIAALIEGKVDAAWARWVRPWTLAAWVFLTLGIALGSWWAYYELGWGGWWYWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: A0A2E3P1X9_9PROT (Heme lyase NrfEFG subunit NrfE n=6 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3P1X9_9PROT)

HSP 1 Score: 382 bits (980), Expect = 2.210e-126
Identity = 185/249 (74.30%), Postives = 208/249 (83.53%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MIAELGHFA++LAL VS VQ TLPL+GA RG     A+ARPAA+MQFLL+ +AF  L   ++ SDFSVLNV QNSHTDKPL+YKISGVWGNHEGS+LLWV+ILA FG  VA  G NLPPSLR RV++IQ LI VGF L ++  SNPFER+ P P  G  LNPLLQDPGLAFHPP LYLGYVGFS+AFSFA+AALIEG+VDAAWARWVRPWTLAAW  LT GI +GSWWA+YELGWGGWW+WDPVENASF
Sbjct:    1 MIAELGHFALILALFVSAVQATLPLIGAHRGDAGWMAVARPAALMQFLLVAVAFGCLMNLYITSDFSVLNVAQNSHTDKPLIYKISGVWGNHEGSMLLWVLILALFGSAVAAFGANLPPSLRARVLSIQALIAVGFYLFILLTSNPFERLIPAPINGNDLNPLLQDPGLAFHPPMLYLGYVGFSMAFSFAIAALIEGRVDAAWARWVRPWTLAAWCFLTAGIGLGSWWAYYELGWGGWWYWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: A0A1Y5E630_9PROT (C-type cytochrome biogenesis protein CcmF n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E630_9PROT)

HSP 1 Score: 381 bits (978), Expect = 4.300e-126
Identity = 178/249 (71.49%), Postives = 212/249 (85.14%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            MI E+GHF ++LAL V+++QGTLP++GA +G  AL   A  AA++QFL + ++F+ALT+A+VGSDFS++NV QNSH+ KP+LYKISGVWGNHEGSLLLW  ILA FGF VA  G NLP  L+ RV+++QG+IG+GFLL ++F SNPFER+ P P  G GLNPLLQDPGLAFHPPFLYLGYVG SI FSFA+AALIEGKVD AWARWVRPWTLAAW  LT+GIA+GSWWA+YELGWGGWWFWDPVENASF
Sbjct:    1 MIGEIGHFGLILALVVAVLQGTLPMIGASKGNVALMRFASSAALVQFLAVSISFIALTIAYVGSDFSIVNVAQNSHSLKPMLYKISGVWGNHEGSLLLWAWILALFGFAVAAFGRNLPDGLKARVLSVQGMIGIGFLLFILFTSNPFERIDPAPFDGRGLNPLLQDPGLAFHPPFLYLGYVGLSITFSFAIAALIEGKVDPAWARWVRPWTLAAWGFLTLGIALGSWWAYYELGWGGWWFWDPVENASF 249          
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Match: W6KAR3_MAGSQ (Cytochrome c-type biogenesis protein CycK n=1 Tax=Magnetospira sp. (strain QH-2) TaxID=1288970 RepID=W6KAR3_MAGSQ)

HSP 1 Score: 380 bits (975), Expect = 8.440e-126
Identity = 178/249 (71.49%), Postives = 208/249 (83.53%), Query Frame = 1
Query:    1 MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLLILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWVVILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERVFPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVDAAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF 747
            M  E+GHFA++LAL V++VQGTLPL+GAQR      A+A PAA+ Q LL+ ++F ALT AFV SDFSVLNV +NSH+DKP+LYK+SGVWGNHEGS+LLWV ILA +G  VA  G NLPP L+ R +AIQ ++ VGFL  ++F SNPFER+ P P  G GLNPLLQDPGLAFHPPFLYLGYVGFS+AFSFA+AALIEG+VDAAWARWVRPWTL AW  LT+GI +GSWWA+YELGWGGWWFWDPVENASF
Sbjct:    1 MFTEIGHFALILALCVAVVQGTLPLIGAQRNNATWMALASPAALAQLLLIAISFAALTHAFVTSDFSVLNVAKNSHSDKPMLYKVSGVWGNHEGSMLLWVFILAIYGGAVAAFGRNLPPGLKARALAIQAMVSVGFLAFILFTSNPFERLVPPPFDGQGLNPLLQDPGLAFHPPFLYLGYVGFSMAFSFAIAALIEGRVDAAWARWVRPWTLVAWITLTIGIGLGSWWAYYELGWGGWWFWDPVENASF 249          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102061.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6QMN1_9PROT2.710e-13074.70Heme lyase NrfEFG subunit NrfE n=1 Tax=Rhodospiril... [more]
A0A2U1WUW7_9PROT2.830e-12972.69Cytochrome C biogenesis protein CcmF (Fragment) n=... [more]
A0A7V7JLR5_9PROT7.030e-12971.89Heme lyase CcmF/NrfE family subunit (Fragment) n=1... [more]
UPI00115D17864.900e-12873.90heme lyase CcmF/NrfE family subunit n=1 Tax=Telmat... [more]
A0A4R3JEU5_9PROT9.800e-12874.70Cytochrome c-type biogenesis protein CcmF n=1 Tax=... [more]
A0A2U1VAH7_9PROT1.100e-12671.49Cytochrome C biogenesis protein CcmF (Fragment) n=... [more]
A0A6J4FEY5_9PROT2.090e-12673.49Heme lyase, CcmF subunit n=1 Tax=Magnetospirillum ... [more]
A0A2E3P1X9_9PROT2.210e-12674.30Heme lyase NrfEFG subunit NrfE n=6 Tax=Rhodospiril... [more]
A0A1Y5E630_9PROT4.300e-12671.49C-type cytochrome biogenesis protein CcmF n=1 Tax=... [more]
W6KAR3_MAGSQ8.440e-12671.49Cytochrome c-type biogenesis protein CycK n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102061contigL-digitata_M_contig102061:2..748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207063.P24_03955
Preferred nameccmF
PFAMsCcmF_C,Cytochrom_C_asm
Model size747
Max annot lvl204441|Rhodospirillales
KEGG koko:K02198
KEGG TC9.B.14.1
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.77e-126
EggNOG OGsCOG1138@1|root,COG1138@2|Bacteria,1MUQS@1224|Proteobacteria,2TRNG@28211|Alphaproteobacteria,2JR5K@204441|Rhodospirillales
DescriptionCOG1138 Cytochrome c biogenesis factor
Cds size747
COG categoryO
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406625.3427832-CDS-L-digitata_M_contig102061:1..7481682406625.3427832-CDS-L-digitata_M_contig102061:1..748Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102061 2..748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102061.1.1prot_L-digitata_M_contig102061.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102061 2..748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102061.1.1

>prot_L-digitata_M_contig102061.1.1 ID=prot_L-digitata_M_contig102061.1.1|Name=mRNA_L-digitata_M_contig102061.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=249bp
MIAELGHFAIVLALAVSIVQGTLPLVGAQRGIEALSAIARPAAIMQFLLL
ILAFVALTMAFVGSDFSVLNVWQNSHTDKPLLYKISGVWGNHEGSLLLWV
VILAAFGFGVATMGNNLPPSLRTRVIAIQGLIGVGFLLLLVFLSNPFERV
FPVPSQGTGLNPLLQDPGLAFHPPFLYLGYVGFSIAFSFAVAALIEGKVD
AAWARWVRPWTLAAWTALTVGIAMGSWWAFYELGWGGWWFWDPVENASF
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mRNA from alignment at L-digitata_M_contig102061:2..748-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102061.1.1 ID=mRNA_L-digitata_M_contig102061.1.1|Name=mRNA_L-digitata_M_contig102061.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=747bp|location=Sequence derived from alignment at L-digitata_M_contig102061:2..748- (Laminaria digitata LdigPH10_18mv male)
ATGATCGCCGAACTCGGCCACTTCGCGATTGTTTTGGCGCTCGCGGTATC GATCGTGCAGGGCACACTGCCACTGGTCGGCGCCCAGCGTGGGATCGAAG CGCTCTCGGCCATCGCGCGGCCTGCCGCGATCATGCAGTTCTTGTTGTTG ATCCTGGCGTTTGTTGCGCTGACGATGGCGTTCGTCGGTTCGGATTTTTC GGTGCTCAACGTTTGGCAGAATTCGCACACCGACAAGCCGCTGCTTTACA AAATTAGCGGGGTGTGGGGAAACCATGAGGGCTCGTTACTGCTGTGGGTT GTGATCCTGGCGGCGTTCGGATTTGGCGTCGCGACCATGGGCAACAACTT ACCGCCGTCGTTGCGTACGCGGGTGATTGCCATTCAGGGGCTGATCGGCG TTGGGTTCTTGCTGCTGCTTGTGTTTCTTTCCAATCCGTTTGAACGCGTG TTTCCGGTACCGTCGCAGGGCACGGGTCTGAACCCGCTGCTGCAAGACCC CGGGCTCGCGTTTCACCCGCCGTTTCTTTACCTCGGCTATGTCGGCTTCT CGATCGCGTTCTCGTTTGCCGTTGCCGCGCTGATCGAAGGGAAAGTCGAT GCCGCCTGGGCTCGCTGGGTGCGGCCCTGGACCCTTGCGGCTTGGACTGC GCTGACCGTCGGGATCGCGATGGGCAGTTGGTGGGCCTTTTACGAACTTG GCTGGGGCGGTTGGTGGTTTTGGGACCCGGTTGAGAATGCGTCCTTC
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Coding sequence (CDS) from alignment at L-digitata_M_contig102061:2..748-

>mRNA_L-digitata_M_contig102061.1.1 ID=mRNA_L-digitata_M_contig102061.1.1|Name=mRNA_L-digitata_M_contig102061.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=747bp|location=Sequence derived from alignment at L-digitata_M_contig102061:2..748- (Laminaria digitata LdigPH10_18mv male)
ATGATCGCCGAACTCGGCCACTTCGCGATTGTTTTGGCGCTCGCGGTATC
GATCGTGCAGGGCACACTGCCACTGGTCGGCGCCCAGCGTGGGATCGAAG
CGCTCTCGGCCATCGCGCGGCCTGCCGCGATCATGCAGTTCTTGTTGTTG
ATCCTGGCGTTTGTTGCGCTGACGATGGCGTTCGTCGGTTCGGATTTTTC
GGTGCTCAACGTTTGGCAGAATTCGCACACCGACAAGCCGCTGCTTTACA
AAATTAGCGGGGTGTGGGGAAACCATGAGGGCTCGTTACTGCTGTGGGTT
GTGATCCTGGCGGCGTTCGGATTTGGCGTCGCGACCATGGGCAACAACTT
ACCGCCGTCGTTGCGTACGCGGGTGATTGCCATTCAGGGGCTGATCGGCG
TTGGGTTCTTGCTGCTGCTTGTGTTTCTTTCCAATCCGTTTGAACGCGTG
TTTCCGGTACCGTCGCAGGGCACGGGTCTGAACCCGCTGCTGCAAGACCC
CGGGCTCGCGTTTCACCCGCCGTTTCTTTACCTCGGCTATGTCGGCTTCT
CGATCGCGTTCTCGTTTGCCGTTGCCGCGCTGATCGAAGGGAAAGTCGAT
GCCGCCTGGGCTCGCTGGGTGCGGCCCTGGACCCTTGCGGCTTGGACTGC
GCTGACCGTCGGGATCGCGATGGGCAGTTGGTGGGCCTTTTACGAACTTG
GCTGGGGCGGTTGGTGGTTTTGGGACCCGGTTGAGAATGCGTCCTTC
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