mRNA_L-digitata_M_contig102055.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102055.2.1
Unique NamemRNA_L-digitata_M_contig102055.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102055.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102055contigL-digitata_M_contig102055:357..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size207
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406625.3098228-CDS-L-digitata_M_contig102055:356..5571682406625.3098228-CDS-L-digitata_M_contig102055:356..557Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102055 357..557 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406625.3175004-UTR-L-digitata_M_contig102055:557..5631682406625.3175004-UTR-L-digitata_M_contig102055:557..563Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig102055 558..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102055.2.1prot_L-digitata_M_contig102055.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102055 357..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102055.2.1

>prot_L-digitata_M_contig102055.2.1 ID=prot_L-digitata_M_contig102055.2.1|Name=mRNA_L-digitata_M_contig102055.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=67bp
MDISFDPNDKGINASVPRNVLARNTTVPEDMDFQVRAGMYEQHMNAGNPR
KDRLSVYSLGGVRLRA*
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mRNA from alignment at L-digitata_M_contig102055:357..563-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102055.2.1 ID=mRNA_L-digitata_M_contig102055.2.1|Name=mRNA_L-digitata_M_contig102055.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=207bp|location=Sequence derived from alignment at L-digitata_M_contig102055:357..563- (Laminaria digitata LdigPH10_18mv male)
GACGGCATGGACATCAGCTTCGACCCCAACGACAAGGGCATCAACGCCTC
CGTGCCGCGCAACGTTCTCGCCCGCAATACCACCGTGCCCGAGGACATGG
ACTTCCAAGTTCGCGCCGGCATGTACGAGCAGCACATGAACGCGGGCAAC
CCTCGCAAGGACCGCCTCTCGGTCTACAGCCTGGGCGGCGTTCGTCTGCG
CGCCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig102055:357..563-

>mRNA_L-digitata_M_contig102055.2.1 ID=mRNA_L-digitata_M_contig102055.2.1|Name=mRNA_L-digitata_M_contig102055.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=201bp|location=Sequence derived from alignment at L-digitata_M_contig102055:357..563- (Laminaria digitata LdigPH10_18mv male)
ATGGACATCAGCTTCGACCCCAACGACAAGGGCATCAACGCCTCCGTGCC
GCGCAACGTTCTCGCCCGCAATACCACCGTGCCCGAGGACATGGACTTCC
AAGTTCGCGCCGGCATGTACGAGCAGCACATGAACGCGGGCAACCCTCGC
AAGGACCGCCTCTCGGTCTACAGCCTGGGCGGCGTTCGTCTGCGCGCCTG
A
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