mRNA_L-digitata_M_contig102055.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig102055.1.1
Unique NamemRNA_L-digitata_M_contig102055.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A7W1A1P9_9DELT (PilZ domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1A1P9_9DELT)

HSP 1 Score: 57.8 bits (138), Expect = 9.320e-9
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARNIS GG+LVE+  AP +G+ V + F+  RG     D +    EV+HH    ++   G A S R +G+RF++
Sbjct:   22 IARNISAGGILVEMSYAPPLGTVVTVHFQHARGD-DLMDEIVARAEVKHHHYLNFSG-SGEAASSRAIGLRFLE 93          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A7W1MKT5_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1MKT5_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARN+S GG+LVE+  AP +G+ V + F+ +RG     D + +  EV+HH    +    G A S R +G+RF++
Sbjct:   60 IARNVSAGGILVEMTYAPPLGTVVTVHFQHIRGEDQL-DEMVVRAEVKHHHYLNFTG-SGEAASTRAIGMRFLE 131          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A538Q9N8_9DELT (PilZ domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A538Q9N8_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 2.170e-8
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVDA----EKIP 237
            +ARNIS GG+LVE+  AP +G+ V + F+  R      D + +  EV+HH    +   + +A S R +G+RF++     E+IP
Sbjct:   28 VARNISAGGILVEMTYAPPLGTVVTVHFQHARDDDDDLDEMVVRAEVKHHHYLNFTGGNDAASS-RAIGLRFLEFVVRDERIP 109          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A7W0Q5W7_9DELT (PilZ domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0Q5W7_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 2.630e-8
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARN+S GG+LVE+  AP +G+ V + F+  RG     D + +  EV+HH    +    G A S R +G+RF++
Sbjct:   55 IARNVSAGGILVEMTYAPPLGTVVTVHFQHARGEDQL-DEMVVRAEVKHHHYLNFTG-SGEAASTRAIGMRFLE 126          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A7V9L5K8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9L5K8_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 3.840e-8
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARN+S GG+LVE+  AP +G+ V + F+  R      D + +  EV+HH    + A   +A S R +G+RF++
Sbjct:   56 VARNVSTGGILVEMSYAPPLGTVVTVHFQHTRADDLL-DEIVVRAEVKHHHYLNFGAIGETATSTRAIGLRFLE 128          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A7Y6UJF6_9DELT (Uncharacterized protein n=1 Tax=Kofleriaceae bacterium TaxID=2212474 RepID=A0A7Y6UJF6_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 7.470e-8
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAP--DSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARNIS GG+LVE+  AP +G+ V + F+ VR     P  D +    EV+HH    +   + +A S R +G+RF++
Sbjct:   53 IARNISAGGLLVEMSYAPPLGTIVTVHFQYVREGGEVPVMDEIVARAEVKHHHYLNFAGGNDAAAS-RAIGLRFIE 127          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A7W0ZSZ7_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0ZSZ7_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 7.470e-8
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARN+S GG+LVE+  AP +G+ V + F+  RG     D +    EV+HH    +    G A S R +G+RF++
Sbjct:   56 IARNVSAGGILVEMNYAPPLGTVVTVHFQNARGDDLF-DEIVARAEVKHHHYLNFTG-SGEAASSRAIGMRFLE 127          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A3M2E1A7_9DELT (PilZ domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M2E1A7_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 2.290e-7
Identity = 35/77 (45.45%), Postives = 41/77 (53.25%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVE---LHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARNIS GGM VELI  P IGS V + F         PDS E      EV+HH      A  G   + RGVG+RFV+
Sbjct:  104 VARNISAGGMFVELIAPPPIGSVVTVRFR-------IPDSDEDVVARAEVKHHYCLNVTAA-GEPTAARGVGLRFVE 172          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: UPI0019BD7733 (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=UPI0019BD7733)

HSP 1 Score: 54.3 bits (129), Expect = 4.810e-7
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARN+S GG+LVE+  AP +G+ V + F+  R      D +    EV+HH    + A    A S R +G+RF++
Sbjct:   65 IARNVSTGGILVEMTYAPPLGTVVTVHFQHARDDEQL-DEIVARAEVKHHHYLNF-AEGNDAASTRAIGLRFIE 136          
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Match: A0A7W0Y1G5_9DELT (PilZ domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0Y1G5_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 6.390e-7
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHHMAWQYNAPDGSARSMRGVGIRFVD 222
            +ARNIS GG+LVE+  AP +G+ V + F+  R      D +    EV+HH    +    G A S R +G+RF++
Sbjct:   43 VARNISGGGILVEMPYAPPLGTVVTVHFQYAREGDEF-DEIVARAEVKHHHYLNFTG-SGDAASARAIGMRFIE 114          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig102055.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7W1A1P9_9DELT9.320e-939.19PilZ domain-containing protein n=1 Tax=Deltaproteo... [more]
A0A7W1MKT5_9DELT1.040e-837.84Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A538Q9N8_9DELT2.170e-836.14PilZ domain-containing protein n=1 Tax=Deltaproteo... [more]
A0A7W0Q5W7_9DELT2.630e-837.84PilZ domain-containing protein n=1 Tax=Deltaproteo... [more]
A0A7V9L5K8_9DELT3.840e-836.49Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7Y6UJF6_9DELT7.470e-838.16Uncharacterized protein n=1 Tax=Kofleriaceae bacte... [more]
A0A7W0ZSZ7_9DELT7.470e-837.84Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A3M2E1A7_9DELT2.290e-745.45PilZ domain-containing protein n=1 Tax=Deltaproteo... [more]
UPI0019BD77334.810e-736.49Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7W0Y1G5_9DELT6.390e-737.84PilZ domain-containing protein n=1 Tax=Deltaproteo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig102055contigL-digitata_M_contig102055:3..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog502025.Hoch_5866
PFAMsPilZ
Model size288
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.57e-05
EggNOG OGs2BR3K@1|root,32K1I@2|Bacteria,1Q2KA@1224|Proteobacteria,43872@68525|delta/epsilon subdivisions,2X3GX@28221|Deltaproteobacteria,2YW1T@29|Myxococcales
DescriptionPilZ domain
Cds size288
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406625.286643-CDS-L-digitata_M_contig102055:2..2901682406625.286643-CDS-L-digitata_M_contig102055:2..290Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig102055 3..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig102055.1.1prot_L-digitata_M_contig102055.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig102055 3..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig102055.1.1

>prot_L-digitata_M_contig102055.1.1 ID=prot_L-digitata_M_contig102055.1.1|Name=mRNA_L-digitata_M_contig102055.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=96bp
MARNISEGGMLVELIMAPAIGSRVQITFEGVRGSTSAPDSVELHGEVRHH
MAWQYNAPDGSARSMRGVGIRFVDAEKIPTQPLTSWVWRTGHTIH*
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mRNA from alignment at L-digitata_M_contig102055:3..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig102055.1.1 ID=mRNA_L-digitata_M_contig102055.1.1|Name=mRNA_L-digitata_M_contig102055.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=288bp|location=Sequence derived from alignment at L-digitata_M_contig102055:3..290+ (Laminaria digitata LdigPH10_18mv male)
ATGGCCCGCAACATCTCCGAAGGCGGCATGCTCGTGGAGTTGATCATGGC CCCGGCGATCGGAAGCCGGGTTCAGATCACATTCGAGGGGGTGCGCGGCT CAACGTCTGCGCCCGACTCGGTAGAGCTTCACGGCGAGGTGCGCCACCAC ATGGCCTGGCAATACAACGCGCCCGATGGCTCCGCGCGAAGCATGCGGGG GGTGGGCATTCGATTCGTCGATGCGGAGAAGATCCCCACGCAGCCGCTCA CGAGCTGGGTGTGGCGCACCGGCCATACGATTCACTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig102055:3..290+

>mRNA_L-digitata_M_contig102055.1.1 ID=mRNA_L-digitata_M_contig102055.1.1|Name=mRNA_L-digitata_M_contig102055.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=288bp|location=Sequence derived from alignment at L-digitata_M_contig102055:3..290+ (Laminaria digitata LdigPH10_18mv male)
ATGGCCCGCAACATCTCCGAAGGCGGCATGCTCGTGGAGTTGATCATGGC
CCCGGCGATCGGAAGCCGGGTTCAGATCACATTCGAGGGGGTGCGCGGCT
CAACGTCTGCGCCCGACTCGGTAGAGCTTCACGGCGAGGTGCGCCACCAC
ATGGCCTGGCAATACAACGCGCCCGATGGCTCCGCGCGAAGCATGCGGGG
GGTGGGCATTCGATTCGTCGATGCGGAGAAGATCCCCACGCAGCCGCTCA
CGAGCTGGGTGTGGCGCACCGGCCATACGATTCACTAG
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