mRNA_L-digitata_M_contig101995.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101995.1.1
Unique NamemRNA_L-digitata_M_contig101995.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: A0A3M0ZNQ4_9BACT (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M0ZNQ4_9BACT)

HSP 1 Score: 324 bits (831), Expect = 2.590e-105
Identity = 154/239 (64.44%), Postives = 199/239 (83.26%), Query Frame = 1 
Query:    1 IEKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLARADV 717
            +EK+L V NL+ P   E  HHV+++L AH  +KRDVDY+V +G+V+I+DE TGR M GRRWSDGLHQ++EAKEG KI+REN TLATIT+QN +RMY+KL+GMTGTA+TEAEEF KIY L+V++IPT+KPM+R+DR D +YK+E EKF AV+++IRE H RGQPVLVGT +++KSE +S +L++  I H  LNAK H +E EI+AQAG+  AVTISTNMAGRGTDI+LGGN E+LARA++
Sbjct:  271 VEKLLGVENLYDPSQIEILHHVNQALRAHTLFKRDVDYVVRDGKVIIVDEFTGRLMPGRRWSDGLHQAVEAKEGCKIERENQTLATITFQNYFRMYEKLAGMTGTAETEAEEFKKIYNLDVVVIPTHKPMIREDRPDVVYKTEREKFNAVIEEIRECHKRGQPVLVGTISIEKSEKLSAMLKRAGIRHHVLNAKHHEREAEIVAQAGRKGAVTISTNMAGRGTDIILGGNPEFLARAEL 509
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: A0A3D4Z3K3_9DELT (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D4Z3K3_9DELT)

HSP 1 Score: 317 bits (812), Expect = 2.960e-105
Identity = 154/242 (63.64%), Postives = 196/242 (80.99%), Query Frame = 1 
Query:    1 IEKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLARADVAHE 726
            +EK+L++ NL+ P + E  HHV+++L AH  +K DVDY+V +GEV+I+DE TGR M GRRWSDGLHQ++EAKEGV+++ EN TLATIT+QN +RM+ KL+GMTGTADTEA EF+KIY LEVM+IPTNKPM+R D  D IYK+E  KF+AV++ I E H +GQPVLVGT +++KSEV+S +L +  I+H  LNAK H +E EI+AQAG+  AVTISTNMAGRGTDILLGGN E+LARA V  E
Sbjct:   54 VEKLLNIDNLYDPRHIEILHHVNQALKAHVLFKLDVDYVVKDGEVIIVDEFTGRLMPGRRWSDGLHQAVEAKEGVQVENENQTLATITFQNYFRMFHKLAGMTGTADTEAAEFAKIYNLEVMVIPTNKPMIRKDGGDFIYKNEKAKFKAVIERIEELHGKGQPVLVGTISIEKSEVLSGMLSRRGIKHHVLNAKQHEREAEIVAQAGRFGAVTISTNMAGRGTDILLGGNPEFLARAKVGTE 295
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: A0A357YFG9_9DELT (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Desulfuromonas sp. TaxID=892 RepID=A0A357YFG9_9DELT)

HSP 1 Score: 332 bits (851), Expect = 5.740e-105
Identity = 162/242 (66.94%), Postives = 202/242 (83.47%), Query Frame = 1 
Query:    1 IEKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLARADVAHE 726
            +E++L + NLF P + E  HHV+++L AHA ++ DVDY+V +GEVLI+DE TGR M GRRWSDGLHQ++EAKEGVKI+ EN TLATIT+QN +RMY KLSGMTGTADTEA EF++IY+LEVM+IPTN+ MVR DR D IYKSE EKFRAVV+D+ ERHA GQPVLVGT +++KSEV+S +LR+  + H  LNAK H +E EI+AQAG+  AVTI+TNMAGRGTDILLGGN E+LAR+D+ +E
Sbjct:  289 VERLLGIDNLFDPRHIEMLHHVNQALKAHALFRLDVDYVVKDGEVLIVDEFTGRLMPGRRWSDGLHQAVEAKEGVKIESENQTLATITFQNYFRMYHKLSGMTGTADTEAVEFNEIYKLEVMVIPTNRAMVRIDRSDIIYKSEKEKFRAVVEDVVERHAEGQPVLVGTISIEKSEVLSDMLRRRGVPHHVLNAKHHEKEAEIVAQAGRLGAVTIATNMAGRGTDILLGGNPEFLARSDMENE 530
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: A0A143B9W1_9DELT (Protein translocase subunit SecA n=1 Tax=Desulfuromonas sp. DDH964 TaxID=1823759 RepID=A0A143B9W1_9DELT)

HSP 1 Score: 328 bits (841), Expect = 3.190e-103
Identity = 158/240 (65.83%), Postives = 198/240 (82.50%), Query Frame = 1 
Query:    1 IEKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLARADVA 720
            +EK+L + NL+ P N E  HHV+++L AHA +KRDVDY+V +GEV+I+DE TGR M GRRWSDGLHQ++EAKEGVKI+ EN TLATIT+QN +RMY+KLSGMTGTADTEA EFS+IY+LEVM+IPTN+PMVR D+ D IYK+E EKF+A ++DI ERHA+GQP LVGT +++KSE +S +L+K  I H  LNAK H +E EI+AQAG+  AV I+TNMAGRGTDI+LGGN E LAR + A
Sbjct:  289 VEKLLGIENLYEPRNIETLHHVNQALKAHALFKRDVDYVVKDGEVMIVDEFTGRLMPGRRWSDGLHQAVEAKEGVKIESENQTLATITFQNYFRMYEKLSGMTGTADTEAAEFSEIYKLEVMVIPTNRPMVRIDQSDVIYKTEREKFKAAIEDIVERHAKGQPTLVGTISIEKSEELSEMLKKRGIPHTVLNAKHHEKEAEIVAQAGRKGAVMIATNMAGRGTDIVLGGNPEMLARREAA 528
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: A0A7V3WI05_9BACT (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7V3WI05_9BACT)

HSP 1 Score: 320 bits (819), Expect = 4.100e-103
Identity = 156/242 (64.46%), Postives = 197/242 (81.40%), Query Frame = 1 
Query:    1 IEKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLARADVAHE 726
            +E++L VGNL+ P N E  HHV ++L AH  +KRDVDY+V +GEV+I+DE TGR M GRRWSDGLHQ+IEAKEGVKI+ EN TLATIT+QN +RMY KL+GMTGTADTEAEEF+KIY LEV++IPTNKPM+R D  D +YK+E  KF AVV +I E + +GQPVLVGT +++KSE++S LL+K  I H  LNAK+H +E EIIAQAG++ AVTI+TNMAGRGTDI+LGGN E LA+  + ++
Sbjct:  288 VERLLGVGNLYDPSNIELVHHVLQALKAHVLFKRDVDYVVKDGEVIIVDEFTGRLMPGRRWSDGLHQAIEAKEGVKIESENQTLATITFQNYFRMYKKLAGMTGTADTEAEEFAKIYNLEVVVIPTNKPMIRVDYPDIVYKTEKAKFNAVVKEIEELYKKGQPVLVGTISIEKSEILSNLLKKKGIPHSVLNAKYHEKEAEIIAQAGRSGAVTIATNMAGRGTDIILGGNPEGLAKEHLRNK 529
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: UPI00041FAF57 (preprotein translocase subunit SecA n=1 Tax=Desulfuromonas sp. TF TaxID=1232410 RepID=UPI00041FAF57)

HSP 1 Score: 328 bits (840), Expect = 4.560e-103
Identity = 163/251 (64.94%), Postives = 202/251 (80.48%), Query Frame = 1 
Query:    1 IEKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLARADVAHEQMGGSDDPK 753
            +EK++ V NL+ P N E  HHV+++L AHA ++RDVDY+V +GEV+I+DE TGR M GRRWSDGLHQ++EAKEGVKI+ EN TLATIT+QN +RMY+KLSGMTGTADTEA EFS+IY+LEVMIIPTN+PM+R DR D IYK+E EKF+AV++DI E H  GQPVLVGT +++ SE +S +LRK  I H  LNAK H +E EI+AQAG+  AVTI+TNMAGRGTDI+LGGNAE LA  + A      SDDP+
Sbjct:  289 VEKLMGVENLYEPSNIEILHHVNQALKAHALFRRDVDYVVKDGEVMIVDEFTGRLMPGRRWSDGLHQAVEAKEGVKIESENQTLATITFQNYFRMYEKLSGMTGTADTEAAEFSEIYKLEVMIIPTNRPMIRIDRADVIYKTEKEKFKAVIEDILETHKSGQPVLVGTISIEHSETLSEMLRKRGIPHTVLNAKHHEKEAEIVAQAGRKGAVTIATNMAGRGTDIVLGGNAEMLATRESAT-----SDDPE 534
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: A0A7C4INP8_9BACT (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7C4INP8_9BACT)

HSP 1 Score: 319 bits (817), Expect = 9.370e-103
Identity = 155/236 (65.68%), Postives = 192/236 (81.36%), Query Frame = 1 
Query:    1 IEKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLAR 708
            +E++L  GNL+ P N +  HHV ++L AH  +K+DVDY+V +GEV+I+DE TGR M GRRWSDGLHQ++EAKEGVKI+ EN TLATIT+QN +RMYDKL+GMTGTADTEAEEF+KIY LEV++IPTNK M+R D  D IYKSE  KF AV+ +I E HA+GQPVLVGT +++KSE++S LL+K  I H  LNAK+H +E EIIAQAG+  AVTI+TNMAGRGTDI+LGGN E L R
Sbjct:  289 VERLLGTGNLYDPSNIDLVHHVLQALKAHTLFKKDVDYVVKDGEVIIVDEFTGRLMPGRRWSDGLHQAVEAKEGVKIESENQTLATITFQNYFRMYDKLAGMTGTADTEAEEFAKIYNLEVVVIPTNKTMIRSDYPDVIYKSEQGKFNAVLAEIEELHAKGQPVLVGTISIEKSEILSHLLKKKGIPHSVLNAKYHEKEAEIIAQAGRKGAVTIATNMAGRGTDIILGGNPEGLTR 524
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: A0A1F9Q469_9DELT (Protein translocase subunit SecA n=3 Tax=Desulfuromonadales TaxID=69541 RepID=A0A1F9Q469_9DELT)

HSP 1 Score: 326 bits (835), Expect = 2.480e-102
Identity = 159/240 (66.25%), Postives = 198/240 (82.50%), Query Frame = 1 
Query:    1 IEKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLARADVA 720
            +E++L + NLF P + E  HHV+++L AHA ++ DVDY+V +GEVLI+DE TGR M GRRWSDGLHQ++EAKEGVKI+ EN TLATIT+QN +RMY KLSGMTGTADTEA EF++IY+LEVM+IPTN+ MVR DR D IYKSE EKFRAVV+D+ ERHA GQPVLVGT +++KSEV+S +LR+  + H  LNAK H +E EI+AQAG+  AVT++TNMAGRGTDI+LGGN E LAR + A
Sbjct:  289 VERLLGIDNLFDPRHIEMLHHVNQALKAHALFRLDVDYVVKDGEVLIVDEFTGRLMPGRRWSDGLHQAVEAKEGVKIESENQTLATITFQNYFRMYHKLSGMTGTADTEAVEFNEIYKLEVMVIPTNRAMVRIDRSDIIYKSEKEKFRAVVEDVVERHAEGQPVLVGTISIEKSEVLSDMLRRRGVPHHVLNAKHHEKEAEIVAQAGRLGAVTLATNMAGRGTDIILGGNPEMLARREAA 528
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: UPI0019ACFD7B (Preprotein translocase subunit SecA n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=UPI0019ACFD7B)

HSP 1 Score: 320 bits (821), Expect = 5.250e-102
Identity = 160/241 (66.39%), Postives = 195/241 (80.91%), Query Frame = 1 
Query:    4 EKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLARADVAHE 726
            EK L V NL++P+N E  HHV++ L AH  Y+RDVDY+V +G+V IIDE TGR ++GRRWSDGLHQ++E+KEGVKI+ EN TLATITYQN +RM+ KL GMTGTA TEAEEF+KIY+L+V+ +PTN+ MVR+D  D IYKSE EKF A+  D+ ER  RGQPVLVGT +V+KSEV+SR L+K  I H  LNAK+HRQE EIIAQAG+  AVTI+TNMAGRGTDILLGGNAE +ARA +  E
Sbjct:  303 EKKLGVDNLYAPDNIEILHHVNQGLRAHTLYRRDVDYMVEDGKVKIIDEFTGRVLDGRRWSDGLHQAVESKEGVKIENENQTLATITYQNYFRMFQKLGGMTGTALTEAEEFAKIYDLDVVAVPTNRSMVRNDEDDLIYKSEREKFEAISTDVSERAKRGQPVLVGTTSVEKSEVLSRYLKKLQIPHSVLNAKYHRQEAEIIAQAGRKGAVTIATNMAGRGTDILLGGNAESMARAALNPE 543
[Close]
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Match: A0A3N5IAH9_9BACT (Protein translocase subunit SecA (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A3N5IAH9_9BACT)

HSP 1 Score: 319 bits (817), Expect = 8.870e-102
Identity = 149/235 (63.40%), Postives = 198/235 (84.26%), Query Frame = 1 
Query:    4 EKMLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTGRTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMTGTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDDIRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEIIAQAGQANAVTISTNMAGRGTDILLGGNAEYLAR 708
            E++L + NL+ P++ +  HH+ + L AH+ ++RDVDY+V +GEV+I+DE TGR M GRRWSDGLHQ++EAKEGV+I+REN TLATIT+QN +RMYDKL+GMTGTA+TEAEEF+KIY+L+V +IPTN+P+ R +  D +YK+E EKF AVV DIRERH +GQP+LVGT +++KSE +S LL+K  I H  LNAK+H +E EI+AQAG+ +AVTI+TNMAGRGTDILLGGNAE+L++
Sbjct:  306 ERLLGIDNLYDPQHIDALHHIQQGLRAHSLFRRDVDYMVKDGEVIIVDEFTGRLMPGRRWSDGLHQAVEAKEGVRIERENQTLATITFQNYFRMYDKLAGMTGTAETEAEEFAKIYKLDVTVIPTNRPLTRINNPDVVYKTEREKFDAVVTDIRERHEKGQPILVGTVSIEKSERLSALLKKRGIRHEVLNAKYHEREAEIVAQAGRESAVTIATNMAGRGTDILLGGNAEFLSK 540
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101995.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M0ZNQ4_9BACT2.590e-10564.44Preprotein translocase subunit SecA (Fragment) n=1... [more]
A0A3D4Z3K3_9DELT2.960e-10563.64Preprotein translocase subunit SecA (Fragment) n=1... [more]
A0A357YFG9_9DELT5.740e-10566.94Preprotein translocase subunit SecA (Fragment) n=1... [more]
A0A143B9W1_9DELT3.190e-10365.83Protein translocase subunit SecA n=1 Tax=Desulfuro... [more]
A0A7V3WI05_9BACT4.100e-10364.46Preprotein translocase subunit SecA (Fragment) n=1... [more]
UPI00041FAF574.560e-10364.94preprotein translocase subunit SecA n=1 Tax=Desulf... [more]
A0A7C4INP8_9BACT9.370e-10365.68Preprotein translocase subunit SecA (Fragment) n=1... [more]
A0A1F9Q469_9DELT2.480e-10266.25Protein translocase subunit SecA n=3 Tax=Desulfuro... [more]
UPI0019ACFD7B5.250e-10266.39Preprotein translocase subunit SecA n=1 Tax=Clostr... [more]
A0A3N5IAH9_9BACT8.870e-10263.40Protein translocase subunit SecA (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101995contigL-digitata_M_contig101995:167..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1232410.KI421413_gene936
Preferred namesecA
PFAMsHelicase_C,SEC-C,SecA_DEAD,SecA_PP_bind,SecA_SW
Model size753
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K03070
KEGG TC3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680
Exons1
Evalue2.62e-102
EggNOG OGsCOG0653@1|root,COG0653@2|Bacteria,1MUJZ@1224|Proteobacteria,42MMV@68525|delta/epsilon subdivisions,2WIZ4@28221|Deltaproteobacteria,43S33@69541|Desulfuromonadales
DescriptionSecA preprotein cross-linking domain
Cds size744
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.8265736-CDS-L-digitata_M_contig101995:166..9101682406624.8265736-CDS-L-digitata_M_contig101995:166..910Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101995 167..910 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.8378034-UTR-L-digitata_M_contig101995:910..9191682406624.8378034-UTR-L-digitata_M_contig101995:910..919Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101995 911..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101995.1.1prot_L-digitata_M_contig101995.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101995 167..910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101995.1.1

>prot_L-digitata_M_contig101995.1.1 ID=prot_L-digitata_M_contig101995.1.1|Name=mRNA_L-digitata_M_contig101995.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=248bp
MLDVGNLFSPENTEWFHHVSKSLSAHACYKRDVDYLVHNGEVLIIDENTG
RTMEGRRWSDGLHQSIEAKEGVKIQRENVTLATITYQNLYRMYDKLSGMT
GTADTEAEEFSKIYELEVMIIPTNKPMVRDDRQDQIYKSEAEKFRAVVDD
IRERHARGQPVLVGTKNVDKSEVISRLLRKHSIEHVTLNAKFHRQEGEII
AQAGQANAVTISTNMAGRGTDILLGGNAEYLARADVAHEQMGGSDDPK
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mRNA from alignment at L-digitata_M_contig101995:167..919-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101995.1.1 ID=mRNA_L-digitata_M_contig101995.1.1|Name=mRNA_L-digitata_M_contig101995.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=753bp|location=Sequence derived from alignment at L-digitata_M_contig101995:167..919- (Laminaria digitata LdigPH10_18mv male)
ATCGAAAAGATGCTGGACGTGGGGAACCTGTTCTCGCCCGAGAACACGGA
GTGGTTCCACCACGTCTCCAAGTCGCTGTCCGCGCACGCCTGTTACAAGC
GTGACGTCGACTACCTCGTGCACAACGGCGAGGTGCTGATCATCGACGAG
AACACCGGCCGAACCATGGAGGGCCGTCGGTGGTCGGATGGCTTGCACCA
ATCTATTGAAGCGAAAGAGGGCGTGAAGATTCAGCGTGAAAACGTCACGC
TGGCCACCATCACCTACCAGAACCTCTACCGCATGTACGACAAGCTGTCG
GGCATGACGGGTACCGCGGACACCGAGGCCGAAGAGTTCAGCAAGATCTA
TGAACTCGAGGTCATGATCATCCCCACCAATAAACCGATGGTGCGTGATG
ACCGGCAGGACCAAATCTACAAGAGCGAGGCCGAGAAGTTCCGCGCCGTG
GTGGACGACATTCGTGAGCGGCACGCGCGCGGGCAGCCGGTGCTGGTTGG
CACCAAGAATGTTGATAAGTCCGAGGTGATCTCGAGGCTGCTGCGTAAGC
ACAGCATTGAGCACGTGACTCTCAACGCCAAGTTCCACCGCCAGGAGGGT
GAGATCATCGCGCAGGCCGGTCAGGCCAATGCTGTGACCATCTCCACCAA
CATGGCGGGTCGAGGCACCGACATCCTGCTGGGTGGTAATGCAGAGTACC
TTGCACGCGCCGACGTTGCGCACGAGCAGATGGGCGGCTCCGATGACCCC
AAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101995:167..919-

>mRNA_L-digitata_M_contig101995.1.1 ID=mRNA_L-digitata_M_contig101995.1.1|Name=mRNA_L-digitata_M_contig101995.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=744bp|location=Sequence derived from alignment at L-digitata_M_contig101995:167..919- (Laminaria digitata LdigPH10_18mv male)
ATGCTGGACGTGGGGAACCTGTTCTCGCCCGAGAACACGGAGTGGTTCCA
CCACGTCTCCAAGTCGCTGTCCGCGCACGCCTGTTACAAGCGTGACGTCG
ACTACCTCGTGCACAACGGCGAGGTGCTGATCATCGACGAGAACACCGGC
CGAACCATGGAGGGCCGTCGGTGGTCGGATGGCTTGCACCAATCTATTGA
AGCGAAAGAGGGCGTGAAGATTCAGCGTGAAAACGTCACGCTGGCCACCA
TCACCTACCAGAACCTCTACCGCATGTACGACAAGCTGTCGGGCATGACG
GGTACCGCGGACACCGAGGCCGAAGAGTTCAGCAAGATCTATGAACTCGA
GGTCATGATCATCCCCACCAATAAACCGATGGTGCGTGATGACCGGCAGG
ACCAAATCTACAAGAGCGAGGCCGAGAAGTTCCGCGCCGTGGTGGACGAC
ATTCGTGAGCGGCACGCGCGCGGGCAGCCGGTGCTGGTTGGCACCAAGAA
TGTTGATAAGTCCGAGGTGATCTCGAGGCTGCTGCGTAAGCACAGCATTG
AGCACGTGACTCTCAACGCCAAGTTCCACCGCCAGGAGGGTGAGATCATC
GCGCAGGCCGGTCAGGCCAATGCTGTGACCATCTCCACCAACATGGCGGG
TCGAGGCACCGACATCCTGCTGGGTGGTAATGCAGAGTACCTTGCACGCG
CCGACGTTGCGCACGAGCAGATGGGCGGCTCCGATGACCCCAAG
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