mRNA_L-digitata_M_contig101994.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101994.1.1
Unique NamemRNA_L-digitata_M_contig101994.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: A0A2E8XRG3_9PROT (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XRG3_9PROT)

HSP 1 Score: 234 bits (596), Expect = 2.040e-74
Identity = 115/149 (77.18%), Postives = 131/149 (87.92%), Query Frame = 3
Query:  429 VSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGTSKN 875
            + V+VTRL HGADL+LP+YETADAAGMDL+AA+  DV + PG +TL+PTGLAIALPP YEAQIRPRSGLALRNGISLVN+PGTIDADYRGE+GVI+INHG+E   VTRGMRIAQMV APVT+A+W E   LP TERGAGGFGSTGT+ N
Sbjct:    5 IDVAVTRLAHGADLELPSYETADAAGMDLRAAVEADVTVQPGEQTLIPTGLAIALPPGYEAQIRPRSGLALRNGISLVNTPGTIDADYRGEVGVILINHGDEPLVVTRGMRIAQMVFAPVTRAVWTETDSLPETERGAGGFGSTGTAGN 153          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: UPI0018666CA6 (dUTP diphosphatase n=1 Tax=Nisaea sediminum TaxID=2775867 RepID=UPI0018666CA6)

HSP 1 Score: 227 bits (579), Expect = 6.080e-72
Identity = 115/147 (78.23%), Postives = 128/147 (87.07%), Query Frame = 3
Query:  426 SVSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGT 866
            +V V V RLPHGADL LPAY+TAD+AGMDL AAIAEDV +APG R L+PTGLAIALPP YE Q+RPRSGL+LRNGI+ +N+PGTIDADYRGEIGVI+INHG E FTVTRGMRIAQMVVAPV QA W+EV  L  TERG+GGFGSTGT
Sbjct:    5 TVDVRVQRLPHGADLPLPAYQTADSAGMDLLAAIAEDVVLAPGERKLIPTGLAIALPPGYEGQVRPRSGLSLRNGITQLNTPGTIDADYRGEIGVILINHGAEPFTVTRGMRIAQMVVAPVIQARWNEVTALDETERGSGGFGSTGT 151          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: A0A2E7PM64_9PROT (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PM64_9PROT)

HSP 1 Score: 227 bits (578), Expect = 9.200e-72
Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 3
Query:  426 SVSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGTSK 872
            +V V+V RLPHGAD++LP+YETADAAGMDL+AA+  D+ IAPG R LVPTGLAIALP  YEAQ+RPRSGLALRNGISLVN+PGTIDADYRGE+GV++INHG+E  TV RGMRIAQ+V+APVTQA W E   L  T RGAGGFGSTGT +
Sbjct:    4 TVDVAVIRLPHGADIELPSYETADAAGMDLRAAVTNDLVIAPGERALVPTGLAIALPQGYEAQVRPRSGLALRNGISLVNTPGTIDADYRGEVGVVLINHGDEPLTVNRGMRIAQLVIAPVTQARWQETDSLSETSRGAGGFGSTGTGR 152          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: A0A2E7I3P6_9PROT (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I3P6_9PROT)

HSP 1 Score: 226 bits (576), Expect = 1.850e-71
Identity = 110/148 (74.32%), Postives = 127/148 (85.81%), Query Frame = 3
Query:  429 VSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGTSK 872
            V V++TRLPHG DLDLP+YET DAAGMDL+AA+A+DV + PG R L+PTG+AIALP  YEAQ+RPRSGLA+RNGISLVN+PGTIDADYRGE+GVI+INHG+E FTV RGMRIAQMV+APVTQA W E   L  T RG GGFGSTGT +
Sbjct:    5 VDVAITRLPHGTDLDLPSYETDDAAGMDLRAAVADDVVLTPGERALIPTGMAIALPTGYEAQVRPRSGLAMRNGISLVNTPGTIDADYRGELGVILINHGQEPFTVRRGMRIAQMVIAPVTQARWQETDNLSETIRGGGGFGSTGTGE 152          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: UPI0018672ABA (dUTP diphosphatase n=2 Tax=Nisaea TaxID=390876 RepID=UPI0018672ABA)

HSP 1 Score: 220 bits (560), Expect = 4.590e-69
Identity = 108/147 (73.47%), Postives = 127/147 (86.39%), Query Frame = 3
Query:  426 SVSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGT 866
            ++ V V RL HGADL LP Y+T D+AGMDL AAI+EDV +APG RTL+PTGL+IALPP +EAQ+RPRSGLALRNG++ +N+PGTIDADYRGEIGVI+INHG++ FTVTRGMRIAQM+VAPV QA W EV EL  T RG+GGFGSTGT
Sbjct:    5 TIDVRVRRLSHGADLPLPEYQTQDSAGMDLMAAISEDVVLAPGERTLIPTGLSIALPPGFEAQVRPRSGLALRNGVTQLNTPGTIDADYRGEIGVILINHGQQPFTVTRGMRIAQMLVAPVIQARWQEVEELDETARGSGGFGSTGT 151          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: A0A848W630_9PROT (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W630_9PROT)

HSP 1 Score: 217 bits (552), Expect = 9.100e-68
Identity = 105/147 (71.43%), Postives = 128/147 (87.07%), Query Frame = 3
Query:  429 VSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGTS 869
            V+V+VTRLPHGADL+LPAYE++ AAGMDL AAI   + IAPG R LVPTGLAIALP  +EAQ+RPRSGLAL+ GI++VN+PGTIDADYRGE+G+I+INHG+  FT+ RGMRIAQM+V PVTQA+W+EV  LP ++RG GGFGSTGT+
Sbjct:    8 VNVAVTRLPHGADLELPAYESSLAAGMDLMAAIDSQMVIAPGERALVPTGLAIALPAGFEAQVRPRSGLALKQGITVVNTPGTIDADYRGEVGIILINHGDSPFTIDRGMRIAQMIVTPVTQAVWNEVESLPESDRGTGGFGSTGTA 154          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: A0A2D7Z2C2_9PROT (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Nisaea sp. TaxID=2024842 RepID=A0A2D7Z2C2_9PROT)

HSP 1 Score: 215 bits (548), Expect = 2.720e-67
Identity = 108/147 (73.47%), Postives = 122/147 (82.99%), Query Frame = 3
Query:  429 VSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGTS 869
            + V V RLPHGADL LPAY+TAD+AGMDL AAI   + +APGAR L+PTGLAIALPP +EAQIRPRSGLALR+GIS VN+PGTIDADYRGEIG+I+INHG+    +TRGMRIAQMVVAPV QA W EV  L  T RG GGFGSTGT+
Sbjct:    2 IDVRVNRLPHGADLPLPAYQTADSAGMDLMAAIDAPITLAPGARQLIPTGLAIALPPGHEAQIRPRSGLALRDGISQVNAPGTIDADYRGEIGIILINHGDRPVEITRGMRIAQMVVAPVIQARWQEVDSLDETARGGGGFGSTGTT 148          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: A0A7X2KDN7_9PROT (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDN7_9PROT)

HSP 1 Score: 215 bits (548), Expect = 2.910e-67
Identity = 103/148 (69.59%), Postives = 125/148 (84.46%), Query Frame = 3
Query:  426 SVSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGTS 869
            + ++ VTRLPHGADLDLPAY TA +AGMDL AAI+E   + PG R ++PTGLAIAL P +EAQ+RPRSGLA +NG++++NSPGTIDADYRGE+GVI+INHG++ FT+ RGMRIAQMV+APVTQA W EV  L  T RGAGGFGSTGT+
Sbjct:    4 TTNIRVTRLPHGADLDLPAYATAQSAGMDLLAAISEPKTLQPGGRAIIPTGLAIALEPDFEAQVRPRSGLAAKNGVTVLNSPGTIDADYRGEVGVILINHGDQAFTIERGMRIAQMVIAPVTQARWQEVASLDETARGAGGFGSTGTA 151          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: A0A2E6Q713_9PROT (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6Q713_9PROT)

HSP 1 Score: 214 bits (545), Expect = 8.280e-67
Identity = 104/146 (71.23%), Postives = 125/146 (85.62%), Query Frame = 3
Query:  429 VSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGT 866
            ++V++TRLPHGADL LP Y TAD+AG+DL  AI + + +APG RTLVP+GLAIALP  YEAQ+RPRSGLA +NG++++NSPGTIDADYRGEIGVI+INHG + F + RGMRIAQM++APVTQ  WDEV ELP T RGAGGFGSTGT
Sbjct:    4 LTVAITRLPHGADLPLPEYATADSAGLDLLPAIDDVLILAPGERTLVPSGLAIALPSGYEAQVRPRSGLAYKNGVTVLNSPGTIDADYRGEIGVILINHGNDAFAIERGMRIAQMIIAPVTQLEWDEVEELPETVRGAGGFGSTGT 149          
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Match: A0A1J5SYC5_9ZZZZ (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5SYC5_9ZZZZ)

HSP 1 Score: 214 bits (545), Expect = 8.560e-67
Identity = 105/149 (70.47%), Postives = 126/149 (84.56%), Query Frame = 3
Query:  426 SVSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVPTGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVINHGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGTSK 872
            +V + V RL HGADL LPAYETA AAG+DL AA+A  + +APGAR LVPTGLAIALP  YEAQ+RPRSGLA R G++++NSPGTIDADYRGE+ VI+INHG ETFTVT GMRIAQMVVAPV +A+W++  ELP ++RGAGGFGSTG ++
Sbjct:    3 AVPIRVQRLAHGADLPLPAYETAHAAGLDLAAALAAPLQLAPGARALVPTGLAIALPEGYEAQVRPRSGLAARQGVTVLNSPGTIDADYRGEVKVILINHGSETFTVTHGMRIAQMVVAPVVRAVWEDCAELPGSDRGAGGFGSTGLTR 151          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101994.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8XRG3_9PROT2.040e-7477.18Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
UPI0018666CA66.080e-7278.23dUTP diphosphatase n=1 Tax=Nisaea sediminum TaxID=... [more]
A0A2E7PM64_9PROT9.200e-7274.50Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A2E7I3P6_9PROT1.850e-7174.32Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
UPI0018672ABA4.590e-6973.47dUTP diphosphatase n=2 Tax=Nisaea TaxID=390876 Rep... [more]
A0A848W630_9PROT9.100e-6871.43Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A2D7Z2C2_9PROT2.720e-6773.47Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A7X2KDN7_9PROT2.910e-6769.59Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A2E6Q713_9PROT8.280e-6771.23Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A1J5SYC5_9ZZZZ8.560e-6770.47Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101994contigL-digitata_M_contig101994:1..884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog414684.RC1_3043
Preferred namedut
PFAMsdUTPase
Model size884
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00002
KEGG koko:K01520
KEGG ReactionR02100,R11896
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.64e-66
EggNOG OGsCOG0756@1|root,COG0756@2|Bacteria,1RA7P@1224|Proteobacteria,2U7B5@28211|Alphaproteobacteria,2JS8T@204441|Rhodospirillales
EC3.6.1.23
DescriptionThis enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
Cds size462
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.7855892-UTR-L-digitata_M_contig101994:0..4221682406624.7855892-UTR-L-digitata_M_contig101994:0..422Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101994 1..422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.7976053-CDS-L-digitata_M_contig101994:422..8841682406624.7976053-CDS-L-digitata_M_contig101994:422..884Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101994 423..884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101994.1.1prot_L-digitata_M_contig101994.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101994 423..884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101994.1.1

>prot_L-digitata_M_contig101994.1.1 ID=prot_L-digitata_M_contig101994.1.1|Name=mRNA_L-digitata_M_contig101994.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=154bp
MSVSVSVTRLPHGADLDLPAYETADAAGMDLQAAIAEDVDIAPGARTLVP
TGLAIALPPSYEAQIRPRSGLALRNGISLVNSPGTIDADYRGEIGVIVIN
HGEETFTVTRGMRIAQMVVAPVTQALWDEVPELPATERGAGGFGSTGTSK
NKA*
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mRNA from alignment at L-digitata_M_contig101994:1..884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101994.1.1 ID=mRNA_L-digitata_M_contig101994.1.1|Name=mRNA_L-digitata_M_contig101994.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=884bp|location=Sequence derived from alignment at L-digitata_M_contig101994:1..884+ (Laminaria digitata LdigPH10_18mv male)
GAGACAGCCTTGCCCGCCGATGTGGCCGTCTGTGCAGCCGCCGTCGCCGA CTGGCGCGTGACCACGGAGGCCACCGAGAAAATGAAGAAGTCCGGCACCG GGGTTCCGACCCTGGAAATGACGGAAAATCCGGACATTCTGGCCACCCTG TCGGCAGCTGCAAATACCCGGCCTGCCCTTGTCATCGGGTTTGCCGCCGA GACTGAAAACGTCGTGGAATACGCACAAGCCAAGCGCAGCAAAAAGGGTT GTGACTGGATTCTCGCAAATGACGTGTCACCCGGGACCGACACCTTCGGA GGCACGGACAACACCATCCATCTGGTCAGTGCCGACGGGATCGAGGACTG GCCGCGCATGTCAAAAACCGACGTGGCTGAGCGCCTCGCCGACCGTATCA CCGAGCAGCTGGGAGCTGGCGAATGAGTGTTTCTGTTTCCGTAACCCGCT TGCCCCATGGGGCCGATCTTGACCTACCGGCCTATGAAACCGCCGATGCT GCCGGCATGGATTTACAGGCCGCCATTGCCGAGGACGTGGACATCGCACC GGGTGCGCGCACGCTGGTCCCCACCGGCCTCGCCATTGCCTTGCCACCCA GCTATGAGGCGCAAATCCGACCCCGATCCGGACTGGCCCTGCGCAACGGG ATATCTCTGGTCAACAGTCCCGGCACCATCGATGCCGATTACCGCGGCGA AATCGGTGTGATTGTCATCAATCATGGCGAAGAGACCTTCACCGTGACCC GTGGCATGCGGATCGCCCAGATGGTTGTCGCCCCGGTGACACAGGCGCTC TGGGACGAAGTGCCCGAGCTTCCGGCAACCGAACGTGGCGCGGGCGGGTT TGGCTCCACCGGCACCTCAAAGAACAAGGCCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101994:1..884+

>mRNA_L-digitata_M_contig101994.1.1 ID=mRNA_L-digitata_M_contig101994.1.1|Name=mRNA_L-digitata_M_contig101994.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=462bp|location=Sequence derived from alignment at L-digitata_M_contig101994:1..884+ (Laminaria digitata LdigPH10_18mv male)
ATGAGTGTTTCTGTTTCCGTAACCCGCTTGCCCCATGGGGCCGATCTTGA
CCTACCGGCCTATGAAACCGCCGATGCTGCCGGCATGGATTTACAGGCCG
CCATTGCCGAGGACGTGGACATCGCACCGGGTGCGCGCACGCTGGTCCCC
ACCGGCCTCGCCATTGCCTTGCCACCCAGCTATGAGGCGCAAATCCGACC
CCGATCCGGACTGGCCCTGCGCAACGGGATATCTCTGGTCAACAGTCCCG
GCACCATCGATGCCGATTACCGCGGCGAAATCGGTGTGATTGTCATCAAT
CATGGCGAAGAGACCTTCACCGTGACCCGTGGCATGCGGATCGCCCAGAT
GGTTGTCGCCCCGGTGACACAGGCGCTCTGGGACGAAGTGCCCGAGCTTC
CGGCAACCGAACGTGGCGCGGGCGGGTTTGGCTCCACCGGCACCTCAAAG
AACAAGGCCTGA
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