mRNA_L-digitata_M_contig101993.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101993.1.1
Unique NamemRNA_L-digitata_M_contig101993.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A6N9AFL7_9BACT (SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A6N9AFL7_9BACT)

HSP 1 Score: 351 bits (901), Expect = 9.250e-110
Identity = 184/306 (60.13%), Postives = 231/306 (75.49%), Query Frame = 1
Query:   22 GQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVNGSGAFLDPDGNVIP--------YGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            GQ++ L   +IGY+D+ +TIT+  G  T DF L  DLL+LDE VVTGV EATP KKLAFTVS++ +E++  AP ++ V S+QGK+AG +V   SG PG+ +SVRLRG+TSITGS+QPLYIVDGV+LGANQVDI ALD+E++E+VKGAAASSLYGSRAQ GVI I T+RG  +PLNQTRVTVRNE+G++ +     AN SH+L V+GSG FLD  G            YGPGT+ D   +GA+FYDNPY G  ++AF+QFFNPGNT TNYV +SQN+ KTNF  SFTN+ E G +QGL G  R++VR
Sbjct:   74 GQTLELSAVYIGYTDEVRTITIGEGIMTQDFVLAADLLQLDEFVVTGVAEATPRKKLAFTVSQVGSEEITLAPASNPVASIQGKVAGVAVQARSGTPGDAISVRLRGATSITGSNQPLYIVDGVVLGANQVDIDALDIENVEIVKGAAASSLYGSRAQNGVINITTQRGGAIPLNQTRVTVRNEYGVSGVAKSFQANTSHDLRVDGSGNFLDDSGAKNECSTCLSNGYGPGTLQDTNPHGAAFYDNPYQGTLYNAFDQFFNPGNTWTNYVGVSQNSSKTNFLASFTNVVEQGAIQGLSGLQRRNVR 379          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A848VPC0_9BACT (SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A848VPC0_9BACT)

HSP 1 Score: 348 bits (893), Expect = 1.470e-108
Identity = 190/317 (59.94%), Postives = 228/317 (71.92%), Query Frame = 1
Query:    1 VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVNGSGAFLDPDG--NVIP------YGPGTIIDQ--EINGASFYDNPYV--GETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            VPA   +GQ VTLR+ F+G+S Q + ITL+ GTQT DF L  D LRLDEVVVTGV+ ATP KKLAFTV KLD  Q++ AP  +AV+S+QGK+AG S+ + SG PG+G SVRLRG+TS+TGSS P+YIVDGVIL     DI ALD+ES+EVVKGAAASSLYGSRAQ GVIQI T+RG N+  NQTRVT RNEFG N L  D  AN +H+L VN +G F++ DG  N         YGPGT+ D     N  SFYD  Y   G   + F++FF  G+T TNY+++SQN+ KTNFH SFTN  E GVL G+DGFNRKS R
Sbjct:   64 VPAAQARGQQVTLRSRFVGFSPQMRVITLNPGTQTQDFVLVLDRLRLDEVVVTGVSSATPAKKLAFTVDKLDASQIELAPAANAVQSLQGKVAGVSITQTSGQPGDGASVRLRGTTSLTGSSAPMYIVDGVILTGGLADIDALDIESIEVVKGAAASSLYGSRAQNGVIQITTKRGGNVAFNQTRVTFRNEFGSNQLPGDFQANNAHDLRVNATGDFVNSDGVKNTCETCFANGYGPGTVTDDIGATNPVSFYDKAYANSGTLNNNFDEFFQAGDTYTNYLAVSQNSAKTNFHASFTNFQEGGVLPGMDGFNRKSFR 380          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A7K1ZJT6_9BACT (SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Bacteroidetes bacterium SB0668_bin_1 TaxID=2604896 RepID=A0A7K1ZJT6_9BACT)

HSP 1 Score: 340 bits (871), Expect = 1.760e-105
Identity = 177/306 (57.84%), Postives = 228/306 (74.51%), Query Frame = 1
Query:    1 VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVNGSG-AFLDPDGNVIPYGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            VP+ +  GQS  L+  +IGYS Q++ +T+S    T  F L  D   LDEVVVTGV EATP KKLAFTV ++D + ++ AP  S +  + GK+AGASV+  SG PG+G+SVRLRGSTSI+GSSQPLYIVDGVILGA+QVDI ALD+E++E+VKGA+ASSLYGSRAQ GV+QI T+RG ++P+NQTRVT+RNE G N +    + N SHN  +N +G +F+D DGN IPYG  T+ID      SF DNPY G T++AF++FFNPGNT TN +++S+N   TNF +SF NL E G++ G  G+NRKSVR
Sbjct:   65 VPSVYA-GQSFDLKVQYIGYSPQTRAVTISPTAMTEHFVLAEDFFNLDEVVVTGVAEATPKKKLAFTVDQVDRDLVELAPARSPLHGLHGKVAGASVIAQSGQPGDGISVRLRGSTSISGSSQPLYIVDGVILGADQVDIDALDIENIEIVKGASASSLYGSRAQNGVLQISTKRGDHIPVNQTRVTIRNEIGTNFMPRKFIPNNSHNYRMNAAGTSFVDADGNDIPYGSATVIDGS-TAVSFLDNPYPGVTYNAFDEFFNPGNTWTNAIAVSRNTRTTNFLLSFANLTEEGIIVGQKGYNRKSVR 368          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A7K2CAQ1_9BACT (SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A7K2CAQ1_9BACT)

HSP 1 Score: 335 bits (859), Expect = 1.470e-103
Identity = 179/313 (57.19%), Postives = 231/313 (73.80%), Query Frame = 1
Query:    1 VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVNGSGAFLDPDGNVIP--------YGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            VP++ V G+++ L   ++G+ +Q ++IT+S G  T DF L  D L+LD++VVTGV EATP KKLAFTVS++D E +  AP ++ V S+QGK+AG +V  +SGAPG   SVRLRG+TS+TG +QPLYIVDGVILG+NQVD+ ALD+  +E+VKGAAASSLYGSRAQ GVI I T RG+  PLN TRVT+RNEFG++++   L AN SH+L V+ SG F+D  G V          YGPG + +Q  NGA+FYDNPY G  F+AFE+ F+PGNT TNYV +SQN+ KTNF  SFTN+ E G + GLDG  R+SVR
Sbjct:   63 VPSDHV-GETLELTARYVGFVEQVRSITISEGIMTEDFVLVVDFLQLDDIVVTGVAEATPRKKLAFTVSQVDGEDITLAPASNPVASIQGKVAGVAVQASSGAPGAVSSVRLRGATSVTGGNQPLYIVDGVILGSNQVDLDALDIADIEIVKGAAASSLYGSRAQNGVINITTNRGSATPLNTTRVTIRNEFGISNVAKTLEANTSHDLQVDASGNFVDNTGAVNSCDTCLSNGYGPGVVQEQNSNGAAFYDNPYQGTLFNAFEEVFDPGNTWTNYVGVSQNSSKTNFLASFTNVAEQGSILGLDGMKRRSVR 374          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A6L8CDB4_9BACT (SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A6L8CDB4_9BACT)

HSP 1 Score: 327 bits (839), Expect = 9.750e-101
Identity = 177/313 (56.55%), Postives = 228/313 (72.84%), Query Frame = 1
Query:    1 VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVNGSGAFLDPDG--NVIP------YGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            VP++ V G+++ L   ++G+ +Q ++IT+S G  T DF LE D L+LD++VVTGV EATP KKLAFTVS++D E +  AP  + V S+QGK+AG +V+  SGAPG   SVRLRG+TSITGS+QPLYIVDGV+LGANQVD  ALD+  +E+VKGAAASSLYGSRAQ GVI I T+RG+ +PLNQTRVTVRNEFG++ +   L AN SH+L V+ SG F+D  G  N  P      YGPG I +   +GA+F+DNPY G   + F+ FF+PGNT  NYV +SQN+ KTNF  SFTN+ E G +  L+G  R+S R
Sbjct:   63 VPSDHV-GETLDLTARYVGFVEQVRSITVSEGIMTEDFVLEVDFLQLDDIVVTGVAEATPRKKLAFTVSQVDGEDITLAPATNPVASIQGKVAGVAVMAGSGAPGATSSVRLRGATSITGSNQPLYIVDGVVLGANQVDFDALDIADIEIVKGAAASSLYGSRAQNGVINITTQRGSAMPLNQTRVTVRNEFGISDVAKSLQANTSHDLQVDASGNFVDGTGAINTCPNCLENGYGPGVIQEVNPHGAAFFDNPYQGTLHNGFDDFFDPGNTWINYVGVSQNSSKTNFLASFTNVAEQGSVLSLEGMKRRSFR 374          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A7C5KXV1_9GAMM (SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C5KXV1_9GAMM)

HSP 1 Score: 292 bits (748), Expect = 9.540e-88
Identity = 156/305 (51.15%), Postives = 212/305 (69.51%), Query Frame = 1
Query:    1 VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVNGSGAFLDPDGNVIPYGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            +PA  VKGQ V +   FIGY +   TI L  G+   DF L  D+L ++ +VVTGV + TP +KL+FTV+++  EQL+Q P  +AV ++QGK+AG  +V  SG PG G+SV LR STSIT SS PL+IVDGVILG++QVDI ALD++S+EVVKGAAASSLYGSRAQ GVIQI T RG++  LNQTRV VR+E+G N L   +  +QSH   VN +G ++D DGN++       +D+ ++   F DN + G  +D  E FF+PG+   N VS++ N+ KTNF  S  N+ EAG++ GL+G+ R++VR
Sbjct:   66 IPAARVKGQEVEISAKFIGYRESKATIVLQGGSIVKDFTLAEDVLNMEAIVVTGVIDETPREKLSFTVAQIGQEQLEQVPATNAVANLQGKVAGVRIVSGSGTPGTGLSVNLRASTSITKSSAPLFIVDGVILGSDQVDIDALDIQSIEVVKGAAASSLYGSRAQNGVIQITTNRGSSNALNQTRVRVRSEYGFNQLAKKIKLSQSHEFLVNENGDWVDADGNIVDR-----LDRVLDPDGFQDNQFKGPLYDNMELFFDPGDFNINLVSLTHNSQKTNFLASMGNVKEAGIIAGLEGYRRQNVR 365          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A496TRZ1_9BACT (Plug domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A496TRZ1_9BACT)

HSP 1 Score: 284 bits (727), Expect = 9.490e-85
Identity = 157/305 (51.48%), Postives = 211/305 (69.18%), Query Frame = 1
Query:    1 VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVNGSGAFLDPDGNVIPYGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            VP ++VKGQ VTL + F+GY     TITL +GT T DF +E D+L +D VVVTG+ + TP KKLAFTV K++ E L+ AP  +A  +++GK+A A V    G PG+GVS+RLRG+TSI+ S+ PL IVDGVI  A+  DI A+D+ES+EVVKGAAASSLYGSRA AGVIQIKTRRG  L LNQTR+ +RNE+G N +   +  ++ H+  VN    F+D DGNV+      +  + ++  +  DN Y  +T+D F+ +F+PG   TN  SIS N   TNF VSFTN+ E+G+++ L G+NRK+ R
Sbjct:   72 VPGKYVKGQEVTLYSSFMGYKLAKTTITLKSGTITQDFVMELDVLDMDAVVVTGLIDETPRKKLAFTVDKVEKEALELAPAVNAGNAIRGKVASAVVRSGGGRPGDGVSIRLRGATSISLSNSPLIIVDGVITNASIRDIDAMDIESIEVVKGAAASSLYGSRAAAGVIQIKTRRGTGLKLNQTRILIRNEYGFNQIARMVKLSRHHHYKVNEHNQFIDNDGNVLKTFD-ELKRRVVDDDNIIDNEYE-KTYDQFDLYFDPGTFYTNTASISHNTRNTNFRVSFTNMQESGIVKALKGYNRKNAR 374          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A7C5Z7L8_9BACT (SusC/RagA family TonB-linked outer membrane protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C5Z7L8_9BACT)

HSP 1 Score: 277 bits (709), Expect = 3.920e-82
Identity = 149/308 (48.38%), Postives = 214/308 (69.48%), Query Frame = 1
Query:    1 VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAV---NGSGAFLDPDGNVIPYGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            +PA  + G+   L   FIGY   ++ I LS G+ T DF+L+ D+L++D VVVTGV EATP   L FTV+++  EQ++  P +SAV S+QGK++G ++VK SG PG+ +SVRLR +T+I GS+ PLYIVDGVILG++ VDI ALD+E++EVVKGAAA+SLYGSRA  GVI IKT+RG  L + +TR+  RNEFG+N        ++SH   V   +G   F+D  GN + +   +++D ++ G +  DNP+ G+T+D  + FF+PG   TN V+ISQ+   TN+ +S +N+ E G++ GLDG+ R+SVR
Sbjct:   78 IPARHMTGRQGVLSAAFIGYHSDTEEIVLSPGSITVDFELKMDVLQMDAVVVTGVAEATPKTMLPFTVARVSNEQVEMVPASSAVASLQGKVSGVTMVKGSGKPGDAISVRLRTATTIQGSNAPLYIVDGVILGSSNVDIDALDIETIEVVKGAAAASLYGSRAANGVINIKTKRGNLLGVGETRIRFRNEFGLNQFVKKEYRSESHEYKVAEIDGQLEFVDDAGNKVDFAS-SVLDNDL-GYAIQDNPFPGKTYDHLDLFFDPGYFYTNTVTISQHKPGTNYLLSLSNMQETGIIDGLDGYGRQSVR 383          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A3M2BLS7_9BACT (SusC/RagA family TonB-linked outer membrane protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3M2BLS7_9BACT)

HSP 1 Score: 260 bits (664), Expect = 1.550e-77
Identity = 142/294 (48.30%), Postives = 197/294 (67.01%), Query Frame = 1
Query:   37 LRTGFIGYSDQSKTITLSAG-TQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVNGSGAFLDPDGNVIPYGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            L+   IGY D  +T+T+SA  T T + ++    L+L E+VVTGV   TP  KL FTV K+D E++   P  SA   + GK+ GA VV+ SG PG+G S+ LRG TSITGS  PL IVDGVI      DI ALDVES+E+VKGAAA+SLYGSRAQ GV+QI TRRG+NL  +Q RVTVRNE+G+  L N +  +++H   +  +G+++D DGN IP+GPG +++      +F DN ++G TFD  ++FF+PG+  +NYV++      TN+  S +N  E G++ G DGF+R++ R
Sbjct:   44 LKVQLIGYEDAVQTVTVSANQTTTVNIEMTATALQLQEIVVTGVAGETPRVKLPFTVEKVDFEEMP-VPQPSAEALIAGKVPGARVVRGSGKPGDGASILLRGPTSITGSQAPLIIVDGVITDNRLADIDALDVESIEIVKGAAAASLYGSRAQNGVVQITTRRGSNLRTDQARVTVRNEYGIQQLGNKIGLSKAHPYKIE-NGSYVDQDGNPIPFGPGVVLENGDPDITFQDNEFLGPTFDQIDRFFDPGDQFSNYVAVEGKTGTTNYRASLSNTREQGIVDGHDGFHRRNFR 335          
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Match: A0A3C0ZPX9_9BACT (Plug domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3C0ZPX9_9BACT)

HSP 1 Score: 246 bits (629), Expect = 3.510e-74
Identity = 139/322 (43.17%), Postives = 205/322 (63.66%), Query Frame = 1
Query:    1 VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEVVVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKNSGAPGEGVSVRLRGSTSI--TG-SSQPLYIVDGVILGANQVDIGALDVESMEVVKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLENDLVANQSHNLAVN---GSGAFLDPDGNVIP-----------YGPGTIIDQEINGASFYDNPYVGETFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFNRKSVR 915
            +PA  V+GQ  TL   FIGY  +++ I LS G  T DF L+ D+L L+EVVVTG    T  +KL F+V ++ +  LQ  P N+   +++GK+AG  +++ SG PG   +V++RG+TS+  TG S  PLYIVDGVILG++ VD+ AL++ES+EVVKGAAASS+YGSRA AGV+QI T RGA+LP  +TRVT+RNE+G N L N +   ++H+  VN       +++     +             GPG  +       SF D PY G+T+D  ++FF+PG   +N ++++  +  TNF ++F N  +AGV++G DGF  +++R
Sbjct:   82 IPASSVRGQQATLVVRFIGYKQKTEKIQLSPGIVTRDFALQEDVLGLEEVVVTGTIGGTFKEKLPFSVDRITSTDLQHVPANTPESAIRGKVAGVKIIQGSGQPGTAPAVQMRGATSVNTTGRSGGPLYIVDGVILGSSTVDLDALNIESIEVVKGAAASSIYGSRAAAGVVQITTNRGAHLPDGETRVTLRNEYGQNQLANKIPLTKAHHFKVNTARSDSPWVNYQSRTVARSARVSDTLWRIGPGGAVGSAFT--SFKDKPYPGKTYDQIDEFFDPGFYYSNAITVTHKSRNTNFLLAFNNRRDAGVIEGNDGFKNQTMR 401          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101993.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N9AFL7_9BACT9.250e-11060.13SusC/RagA family TonB-linked outer membrane protei... [more]
A0A848VPC0_9BACT1.470e-10859.94SusC/RagA family TonB-linked outer membrane protei... [more]
A0A7K1ZJT6_9BACT1.760e-10557.84SusC/RagA family TonB-linked outer membrane protei... [more]
A0A7K2CAQ1_9BACT1.470e-10357.19SusC/RagA family TonB-linked outer membrane protei... [more]
A0A6L8CDB4_9BACT9.750e-10156.55SusC/RagA family TonB-linked outer membrane protei... [more]
A0A7C5KXV1_9GAMM9.540e-8851.15SusC/RagA family TonB-linked outer membrane protei... [more]
A0A496TRZ1_9BACT9.490e-8551.48Plug domain-containing protein n=1 Tax=candidate d... [more]
A0A7C5Z7L8_9BACT3.920e-8248.38SusC/RagA family TonB-linked outer membrane protei... [more]
A0A3M2BLS7_9BACT1.550e-7748.30SusC/RagA family TonB-linked outer membrane protei... [more]
A0A3C0ZPX9_9BACT3.510e-7443.17Plug domain-containing protein (Fragment) n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101993contigL-digitata_M_contig101993:4..918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1379270.AUXF01000005_gene335
PFAMsCarbopepD_reg_2,CarboxypepD_reg,Plug,TonB_dep_Rec
Model size915
Max annot lvl142182|Gemmatimonadetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.05e-65
EggNOG OGsCOG1629@1|root,COG4206@1|root,COG4206@2|Bacteria,COG4771@2|Bacteria,1ZTBA@142182|Gemmatimonadetes
DescriptionCarboxypepD_reg-like domain
Cds size915
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.7562919-CDS-L-digitata_M_contig101993:3..9181682406624.7562919-CDS-L-digitata_M_contig101993:3..918Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101993 4..918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101993.1.1prot_L-digitata_M_contig101993.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101993 4..918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101993.1.1

>prot_L-digitata_M_contig101993.1.1 ID=prot_L-digitata_M_contig101993.1.1|Name=mRNA_L-digitata_M_contig101993.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=305bp
VPAEFVKGQSVTLRTGFIGYSDQSKTITLSAGTQTHDFQLETDLLRLDEV
VVTGVTEATPTKKLAFTVSKLDTEQLQQAPGNSAVESMQGKIAGASVVKN
SGAPGEGVSVRLRGSTSITGSSQPLYIVDGVILGANQVDIGALDVESMEV
VKGAAASSLYGSRAQAGVIQIKTRRGANLPLNQTRVTVRNEFGMNSLEND
LVANQSHNLAVNGSGAFLDPDGNVIPYGPGTIIDQEINGASFYDNPYVGE
TFDAFEQFFNPGNTLTNYVSISQNNVKTNFHVSFTNLDEAGVLQGLDGFN
RKSVR
back to top

mRNA from alignment at L-digitata_M_contig101993:4..918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101993.1.1 ID=mRNA_L-digitata_M_contig101993.1.1|Name=mRNA_L-digitata_M_contig101993.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=915bp|location=Sequence derived from alignment at L-digitata_M_contig101993:4..918+ (Laminaria digitata LdigPH10_18mv male)
GTGCCGGCTGAATTTGTCAAAGGACAGTCAGTGACACTGCGTACAGGATT TATTGGATATTCCGATCAGTCCAAAACCATCACCCTCTCTGCAGGTACGC AAACCCACGATTTCCAACTCGAGACAGACTTGCTCCGGTTGGATGAGGTA GTTGTTACCGGGGTTACAGAAGCAACACCTACCAAGAAACTTGCGTTTAC CGTAAGCAAGCTGGATACAGAGCAGCTACAGCAGGCACCGGGAAATAGTG CTGTTGAATCTATGCAAGGCAAGATTGCCGGCGCTTCTGTTGTTAAAAAC TCAGGTGCTCCAGGTGAAGGCGTCTCTGTGCGTCTTCGCGGTTCCACTTC CATCACAGGCAGCTCCCAACCCTTATACATCGTAGATGGTGTTATCCTTG GTGCAAACCAGGTAGATATTGGTGCACTTGATGTTGAGAGCATGGAAGTT GTGAAAGGTGCTGCTGCATCTTCTTTGTATGGATCGCGTGCACAGGCAGG CGTTATTCAGATCAAAACACGTCGTGGAGCAAATCTTCCGCTCAACCAAA CGCGTGTAACCGTTCGTAATGAGTTTGGGATGAACAGCCTGGAAAATGAT CTGGTTGCTAACCAATCTCATAACCTTGCTGTGAATGGTAGCGGTGCTTT TCTTGATCCGGATGGCAATGTGATTCCGTATGGTCCGGGAACGATCATTG ATCAGGAAATCAATGGCGCTTCATTTTATGACAATCCTTATGTGGGAGAG ACATTTGATGCGTTTGAGCAGTTCTTCAATCCTGGTAACACACTTACCAA CTATGTCTCTATCAGCCAGAACAACGTAAAAACAAACTTCCACGTTTCTT TTACAAATCTGGATGAAGCCGGCGTTCTGCAAGGACTCGATGGATTTAAT CGCAAAAGCGTTCGC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101993:4..918+

>mRNA_L-digitata_M_contig101993.1.1 ID=mRNA_L-digitata_M_contig101993.1.1|Name=mRNA_L-digitata_M_contig101993.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=915bp|location=Sequence derived from alignment at L-digitata_M_contig101993:4..918+ (Laminaria digitata LdigPH10_18mv male)
GTGCCGGCTGAATTTGTCAAAGGACAGTCAGTGACACTGCGTACAGGATT
TATTGGATATTCCGATCAGTCCAAAACCATCACCCTCTCTGCAGGTACGC
AAACCCACGATTTCCAACTCGAGACAGACTTGCTCCGGTTGGATGAGGTA
GTTGTTACCGGGGTTACAGAAGCAACACCTACCAAGAAACTTGCGTTTAC
CGTAAGCAAGCTGGATACAGAGCAGCTACAGCAGGCACCGGGAAATAGTG
CTGTTGAATCTATGCAAGGCAAGATTGCCGGCGCTTCTGTTGTTAAAAAC
TCAGGTGCTCCAGGTGAAGGCGTCTCTGTGCGTCTTCGCGGTTCCACTTC
CATCACAGGCAGCTCCCAACCCTTATACATCGTAGATGGTGTTATCCTTG
GTGCAAACCAGGTAGATATTGGTGCACTTGATGTTGAGAGCATGGAAGTT
GTGAAAGGTGCTGCTGCATCTTCTTTGTATGGATCGCGTGCACAGGCAGG
CGTTATTCAGATCAAAACACGTCGTGGAGCAAATCTTCCGCTCAACCAAA
CGCGTGTAACCGTTCGTAATGAGTTTGGGATGAACAGCCTGGAAAATGAT
CTGGTTGCTAACCAATCTCATAACCTTGCTGTGAATGGTAGCGGTGCTTT
TCTTGATCCGGATGGCAATGTGATTCCGTATGGTCCGGGAACGATCATTG
ATCAGGAAATCAATGGCGCTTCATTTTATGACAATCCTTATGTGGGAGAG
ACATTTGATGCGTTTGAGCAGTTCTTCAATCCTGGTAACACACTTACCAA
CTATGTCTCTATCAGCCAGAACAACGTAAAAACAAACTTCCACGTTTCTT
TTACAAATCTGGATGAAGCCGGCGTTCTGCAAGGACTCGATGGATTTAAT
CGCAAAAGCGTTCGC
back to top