mRNA_L-digitata_M_contig101968.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101968.1.1
Unique NamemRNA_L-digitata_M_contig101968.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.570e-18
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    7 KQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTASTMSAEV 273
            KQCWCG +  D+D +G    CDMPC G+ GETCGG +AM++YEN+ D GE          P +LGC+ D   +R+     +++ M+AE+
Sbjct:  281 KQCWCGAEGADYDANGAGV-CDMPCGGDAGETCGGFYAMSIYENDADDGESDD-------PSYLGCYSDPADSRVFVQGVSSAAMTAEI 361          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.790e-17
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   10 QCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTASTMSAEV 273
            +CWCG +  D+D +G    CDMPC G+ GETCGG +AM++YE++ DGGE          P +LGC+ D   +R+     ++ +M+AEV
Sbjct:   24 RCWCGAEGADYDANGAGV-CDMPCGGDAGETCGGFYAMSIYEHDVDGGESDD-------PSYLGCYSDPADSRVFEQKISSDSMTAEV 103          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.200e-13
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    4 TKQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTASTMSAEV 273
            +KQCWCG    D+D +G    CDM C+G++ ETCGG +AM+VYEN  D G             +LGC+ D   +RI     TA  M++E+
Sbjct:   28 SKQCWCG-DNVDYDANGEGV-CDMACSGDSSETCGGFYAMSVYENPDDSG-------------YLGCYSDPADSRIFDLVATADDMTSEI 102          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A225A921_9EURO (Uncharacterized protein n=1 Tax=Talaromyces atroroseus TaxID=1441469 RepID=A0A225A921_9EURO)

HSP 1 Score: 69.7 bits (169), Expect = 6.750e-12
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 HTKQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTAST 258
            +T QC+CG   +        T+C+MPC G++ ETCGG   ++VY NN      TP   ++ G ++LGC+ D  A R ++  YT S+
Sbjct:  584 YTTQCFCGTGLSSSSTEAAKTDCNMPCGGDSTETCGGANILSVYTNNN---YVTPGGATIPGYQYLGCYNDTAAARSLSSTYTYSS 666          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A364KVR0_9EURO (Uncharacterized protein n=1 Tax=Talaromyces amestolkiae TaxID=1196081 RepID=A0A364KVR0_9EURO)

HSP 1 Score: 69.7 bits (169), Expect = 6.810e-12
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 HTKQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTAS 255
            +T QC+CG            T+C+MPC G++ ETCGG   ++VY NN      TP   ++ G ++LGC+ D  A R ++G YT S
Sbjct: 1309 YTTQCFCGTTLGSSGTEAAETDCNMPCGGDSTETCGGPNRLSVYTNNN---YVTPGGATIPGYKYLGCYNDTAAARSLSGTYTYS 1390          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.950e-11
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 HTKQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTASTMSAEV 273
            ++ +CWCG    D+D +G    CDM C+G++ +TCGG +AM+VYEN  D G             +LGC+ D   +RI     T+  M++E+
Sbjct:   57 YSSECWCG-DNVDYDANGEGV-CDMACSGDSSQTCGGFYAMSVYENPDDSG-------------YLGCYSDPADSRIFELVATSDDMTSEI 132          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A6H5KHE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.210e-11
Identity = 30/86 (34.88%), Postives = 43/86 (50.00%), Query Frame = 1
Query:   13 CWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTASTMSAE 270
            CWCG     + V+G    CDMPC+GN+ E+CGG ++M VY  +               P +LGCF D    R+     + + M+AE
Sbjct:    9 CWCGDINAQYSVNGVGV-CDMPCSGNSEESCGGSYSMDVYAQD---------------PAYLGCFSDPADGRMFVWESSNTAMTAE 78          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.400e-10
Identity = 30/90 (33.33%), Postives = 47/90 (52.22%), Query Frame = 1
Query:    1 HTKQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTASTMSAE 270
            ++++CWCG     + V+G    CDMPC+GN+ E+CGG ++M VY  +               P +LGCF D    R+     + + M+AE
Sbjct:  151 YSRECWCGDINAQYSVNGVGV-CDMPCSGNSEESCGGSYSMDVYAQD---------------PAYLGCFSDPADGRMFVWESSNTAMTAE 224          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.190e-10
Identity = 30/90 (33.33%), Postives = 47/90 (52.22%), Query Frame = 1
Query:    1 HTKQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDGGEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTASTMSAE 270
            ++++CWCG     + V+G    CDMPC+GN+ E+CGG ++M VY  +               P +LGCF D    R+     + + M+AE
Sbjct:  132 YSRECWCGDINAQYSVNGVGV-CDMPCSGNSEESCGGSYSMDVYAQD---------------PAYLGCFSDPADGRMFVWESSNTAMTAE 205          
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 7.300e-10
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 HTKQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGD 147
            ++++CWCG +  D+D +G    CDMPC G+  E CGG +A++VYEN+G+
Sbjct:  149 YSEECWCGAEGADYDANGAGV-CDMPCGGDADEICGGFYAISVYENDGE 196          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101968.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K646_9PHAE2.570e-1842.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV8_9PHAE1.790e-1742.05WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K060_9PHAE7.200e-1341.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225A921_9EURO6.750e-1237.21Uncharacterized protein n=1 Tax=Talaromyces atroro... [more]
A0A364KVR0_9EURO6.810e-1238.82Uncharacterized protein n=1 Tax=Talaromyces amesto... [more]
D7FH79_ECTSI2.950e-1136.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHE9_9PHAE9.210e-1134.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL84_9PHAE1.400e-1033.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS7_9PHAE2.190e-1033.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU45_9PHAE7.300e-1046.94WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101968contigL-digitata_M_contig101968:216..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G4P0
PFAMsVWD,WSC
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-13
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size273
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.5667129-CDS-L-digitata_M_contig101968:215..4881682406624.5667129-CDS-L-digitata_M_contig101968:215..488Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101968 216..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101968.1.1prot_L-digitata_M_contig101968.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101968 216..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101968.1.1

>prot_L-digitata_M_contig101968.1.1 ID=prot_L-digitata_M_contig101968.1.1|Name=mRNA_L-digitata_M_contig101968.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=91bp
HTKQCWCGGQRTDFDVHGPATNCDMPCAGNTGETCGGRFAMTVYENNGDG
GEPTPAPVSVGGPEFLGCFGDVKANRIMTGPYTASTMSAEV
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mRNA from alignment at L-digitata_M_contig101968:216..488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101968.1.1 ID=mRNA_L-digitata_M_contig101968.1.1|Name=mRNA_L-digitata_M_contig101968.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=273bp|location=Sequence derived from alignment at L-digitata_M_contig101968:216..488+ (Laminaria digitata LdigPH10_18mv male)
CACACAAAACAGTGCTGGTGCGGAGGACAGAGGACGGACTTCGACGTGCA CGGCCCCGCCACCAACTGCGACATGCCCTGCGCCGGAAACACCGGCGAGA CCTGCGGCGGCCGATTCGCCATGACCGTCTACGAAAACAACGGCGATGGC GGAGAGCCGACCCCTGCCCCGGTCTCCGTGGGTGGTCCCGAGTTCCTGGG CTGCTTCGGGGACGTGAAGGCGAACAGGATCATGACCGGCCCGTACACGG CCTCCACCATGAGTGCAGAGGTA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101968:216..488+

>mRNA_L-digitata_M_contig101968.1.1 ID=mRNA_L-digitata_M_contig101968.1.1|Name=mRNA_L-digitata_M_contig101968.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=273bp|location=Sequence derived from alignment at L-digitata_M_contig101968:216..488+ (Laminaria digitata LdigPH10_18mv male)
CACACAAAACAGTGCTGGTGCGGAGGACAGAGGACGGACTTCGACGTGCA
CGGCCCCGCCACCAACTGCGACATGCCCTGCGCCGGAAACACCGGCGAGA
CCTGCGGCGGCCGATTCGCCATGACCGTCTACGAAAACAACGGCGATGGC
GGAGAGCCGACCCCTGCCCCGGTCTCCGTGGGTGGTCCCGAGTTCCTGGG
CTGCTTCGGGGACGTGAAGGCGAACAGGATCATGACCGGCCCGTACACGG
CCTCCACCATGAGTGCAGAGGTA
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