mRNA_L-digitata_M_contig101942.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101942.1.1
Unique NamemRNA_L-digitata_M_contig101942.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101942.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101942contigL-digitata_M_contig101942:2..581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size580
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.473883-UTR-L-digitata_M_contig101942:1..371682406624.473883-UTR-L-digitata_M_contig101942:1..37Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101942 2..37 +
1682406624.4884813-UTR-L-digitata_M_contig101942:454..5811682406624.4884813-UTR-L-digitata_M_contig101942:454..581Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101942 455..581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.4815202-CDS-L-digitata_M_contig101942:37..4541682406624.4815202-CDS-L-digitata_M_contig101942:37..454Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101942 38..454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101942.1.1prot_L-digitata_M_contig101942.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101942 38..454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101942.1.1

>prot_L-digitata_M_contig101942.1.1 ID=prot_L-digitata_M_contig101942.1.1|Name=mRNA_L-digitata_M_contig101942.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=139bp
MVTPREQQGNHLGNSRATIALMYNNSSTPELIVIIMLAIRQCAAWSYWSL
SCDHVTTCYISFFSFFFFLFSSTLLSSHFCLSPSVVATQIQGHKAGTSPP
SPHYSTYMPSFLSRKKRVHSALFPTLVDFHRILRTPGR*
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mRNA from alignment at L-digitata_M_contig101942:2..581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101942.1.1 ID=mRNA_L-digitata_M_contig101942.1.1|Name=mRNA_L-digitata_M_contig101942.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=580bp|location=Sequence derived from alignment at L-digitata_M_contig101942:2..581+ (Laminaria digitata LdigPH10_18mv male)
CAGAAATTTCCATACCTCCGTCCAACCTTGTATTAAATGGTAACACCTAG
GGAACAGCAGGGCAACCACCTAGGGAACAGCAGGGCAACCATTGCCCTGA
TGTACAACAATTCTTCCACTCCAGAGTTAATTGTTATTATTATGCTTGCC
ATCCGACAATGTGCAGCATGGAGTTATTGGAGCCTGTCCTGTGATCACGT
AACAACTTGCTACATATCATTTTTTTCTTTTTTCTTTTTTCTTTTTTCAT
CCACTTTATTATCTTCGCACTTCTGTCTCTCTCCCTCCGTAGTCGCAACT
CAGATCCAGGGTCACAAAGCAGGCACTTCTCCCCCCTCTCCCCACTACAG
TACATACATGCCTTCATTTTTATCGCGCAAGAAGAGGGTTCATTCAGCAT
TATTCCCAACGCTTGTCGATTTTCATCGAATTTTGCGTACACCTGGACGA
TGACGAAGACCTGAAGGTAATTTTTTTTAACGAAAAATGAGCTTGTCTGA
CGTATCACGCGCAGCTTGAAAAAGTTGAGTTTCAACCACTCAATCGGTCG
TACTCACAGCTGACGTATTTCAGTTCTTTT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101942:2..581+

>mRNA_L-digitata_M_contig101942.1.1 ID=mRNA_L-digitata_M_contig101942.1.1|Name=mRNA_L-digitata_M_contig101942.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=417bp|location=Sequence derived from alignment at L-digitata_M_contig101942:2..581+ (Laminaria digitata LdigPH10_18mv male)
ATGGTAACACCTAGGGAACAGCAGGGCAACCACCTAGGGAACAGCAGGGC
AACCATTGCCCTGATGTACAACAATTCTTCCACTCCAGAGTTAATTGTTA
TTATTATGCTTGCCATCCGACAATGTGCAGCATGGAGTTATTGGAGCCTG
TCCTGTGATCACGTAACAACTTGCTACATATCATTTTTTTCTTTTTTCTT
TTTTCTTTTTTCATCCACTTTATTATCTTCGCACTTCTGTCTCTCTCCCT
CCGTAGTCGCAACTCAGATCCAGGGTCACAAAGCAGGCACTTCTCCCCCC
TCTCCCCACTACAGTACATACATGCCTTCATTTTTATCGCGCAAGAAGAG
GGTTCATTCAGCATTATTCCCAACGCTTGTCGATTTTCATCGAATTTTGC
GTACACCTGGACGATGA
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