mRNA_L-digitata_M_contig10194.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10194.1.1
Unique NamemRNA_L-digitata_M_contig10194.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10194.1.1 vs. uniprot
Match: D7G706_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G706_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 5.350e-47
Identity = 101/218 (46.33%), Postives = 119/218 (54.59%), Query Frame = 1 
Query:   88 SARSLAYPPSARARTANLPQQHGHTAVQDGTARGFGRARTASTASRRGESSRQRDMFLPATDFSAYEPEESNKFYTASTACTLGRICSDSFLIQPAWSRVTTSPWGEAAKVCGGYGKRLTNGTNSVDAPDFMYSKRFEAHERNLSWKKRPRAFAYHGEANTAVSDDTPQFFRRQHTQVYGRPVEKIDKPRMFKILLGKQVIGEPAVPETD-CNKPLQW 738
            S RS  + P ARA+TANLPQ    T  + GT R       A  AS R     +  +FLP   F   E +E++KFYTAS  CTL RI SDS LIQP+W +V TSPWGEAA+V GGYG+RL NG NSV++PDFM SK                                          VYGRP+EKIDKPR+ K+ LGKQ+I EP VPETD    PL W
Sbjct:    2 STRSQTHWPQARAQTANLPQPD-RTRSERGTLRATTARSRARDASSRRRGDARSGIFLPQVKF---EADENSKFYTASPVCTLSRIFSDSSLIQPSWPKVATSPWGEAARVTGGYGERLLNGANSVESPDFMLSK------------------------------------------VYGRPIEKIDKPRLLKMHLGKQIIAEPEVPETDLAGGPLDW 173
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10194.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G706_ECTSI5.350e-4746.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10194contigL-digitata_M_contig10194:741..3476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size768
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_011550.1
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.421915-CDS-L-digitata_M_contig10194:740..9901682406624.421915-CDS-L-digitata_M_contig10194:740..990Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10194 741..990 +
1682406624.4293723-CDS-L-digitata_M_contig10194:1180..14221682406624.4293723-CDS-L-digitata_M_contig10194:1180..1422Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10194 1181..1422 +
1682406624.436943-CDS-L-digitata_M_contig10194:1825..19511682406624.436943-CDS-L-digitata_M_contig10194:1825..1951Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10194 1826..1951 +
1682406624.4439409-CDS-L-digitata_M_contig10194:3025..30911682406624.4439409-CDS-L-digitata_M_contig10194:3025..3091Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10194 3026..3091 +
1682406624.4510381-CDS-L-digitata_M_contig10194:3392..34761682406624.4510381-CDS-L-digitata_M_contig10194:3392..3476Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10194 3393..3476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10194.1.1prot_L-digitata_M_contig10194.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10194 741..3476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10194.1.1

>prot_L-digitata_M_contig10194.1.1 ID=prot_L-digitata_M_contig10194.1.1|Name=mRNA_L-digitata_M_contig10194.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=256bp
MTCRRKERVGGGQTTKPTQAGGALQPPQPSARSLAYPPSARARTANLPQQ
HGHTAVQDGTARGFGRARTASTASRRGESSRQRDMFLPATDFSAYEPEES
NKFYTASTACTLGRICSDSFLIQPAWSRVTTSPWGEAAKVCGGYGKRLTN
GTNSVDAPDFMYSKRFEAHERNLSWKKRPRAFAYHGEANTAVSDDTPQFF
RRQHTQVYGRPVEKIDKPRMFKILLGKQVIGEPAVPETDCNKPLQWEDTR
PPGSQ*
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mRNA from alignment at L-digitata_M_contig10194:741..3476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10194.1.1 ID=mRNA_L-digitata_M_contig10194.1.1|Name=mRNA_L-digitata_M_contig10194.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2736bp|location=Sequence derived from alignment at L-digitata_M_contig10194:741..3476+ (Laminaria digitata LdigPH10_18mv male)
ATGACATGTCGTCGGAAAGAACGCGTAGGCGGCGGGCAAACGACCAAGCC
GACTCAAGCGGGAGGCGCACTGCAGCCGCCTCAGCCTTCGGCACGGTCGC
TCGCATACCCGCCGTCGGCACGTGCCCGGACGGCAAACCTCCCCCAACAA
CATGGTCATACTGCTGTACAAGACGGCACTGCTAGAGGTTTTGGGCGGGC
GAGAACGGCGAGCACGGCGAGCAGGAGGGGCGAAAGCTCTCGGCAAAGAG
GTACAAACAATGGAAATAAACAAACCCGTGTTGGTTGTCAATCAATGGTC
GTTAGGTAGGTGGTGCATCGTTAGCTCGTTGTTGGCTCCACTGCTGCTGC
TATAGACTACCTGTCTGTGGCGGTATCTAAAATTATGTGGATGGATGTGT
TTACAAATCTCTTCCACAGGCAAGGTTAACCCCAGGGAAGACATGTTCCT
GCCTGCTACGGATTTCTCGGCGTACGAACCGGAGGAAAGCAACAAGTTCT
ACACCGCTTCCACAGCGTGCACGCTCGGGAGGATATGCTCCGACAGCTTC
CTGATCCAGCCCGCTTGGTCGAGAGTTACCACGTCTCCGTGGGGGGAAGC
TGCGAAAGTATGCGGAGGTTACGGCAAGAGGCTGACTAACGGAACGAATT
CTGTGGACGCCCCCGACTTCATGTATAGCAAGGTATGTCCCAGCTAGGCA
ATGTACTGCTGTAGCACTCTACTTGTACGTAGGTACAGCACAACTTTTAC
GAGTGCTGCAGCTCGTGATCCATCACGGGTTCGAACACGTCCCCAAAAAA
TAGAATCTTACAGAGTGATTGCGGACCGAAATTACCTTTGTATACGTATA
CGTAAGATCGTCCTGCTGATCCTGTGGGCGCTGCGAGTCGTCGATTTATA
CCCTCCACGCGGGTTGTAGAGCTCGCGCGGCCGACGTTGCACACAGCGTG
CAAAGCTGTGGATCGACGATGTCGAACTCACAGCTGGCATACAGCGGTAC
TCATTTGCAGTGATATTTTACTTGTGACAAAACTTGCAACGCGTCCGTGT
TGGCTTCTTCTCTTCTCACTCGCGTCGATCGACAGAGATTCGAGGCACAC
GAGAGGAATCTGAGCTGGAAGAAGAGACCACGCGCGTTTGCGTACCACGG
CGAGGCCAACACGGCTGTGTCCGACGACACTCCTCAGTTCTTCCGCCGTC
AGCACACACAGGTCGGACTATATATTCTGCACTCGCTTCTGCTGCCGCAG
TACCCTAGAAACTTGTTTCCCCATTTTTTATTTTTTATTTTTTATTTTCC
ATGCCATTTATTGTCTTCGCACTTCTGTCTCTCTTTCTCTATAGTCGTAT
CTCTGTTCCGTGGTCTGTAAGTATACTATTCTTCCCNNNNNNNNNNGGGA
CTGTCAATCTCAGTAGGTGTCGAGGCTACCACTGAACCACAGGGGACGAC
CTGCTTGTATGCGTGTATGTACGTTTTTTACATGTTGATACCTCCCTGTA
CGGTAAACGTCGGACAGCGCACATACAAGTGCAGTTGCGCGTGGTCGAGA
TTTGTATGGTAAAAGTTGCGGTAGTATAAATTGCAACGGGCGCTACTAGC
TCGGCTATCCCTGTTATGGATCGAGAGCAAGATCATGCTGTTAGCTGTAC
TCACTCGTAGCTCGGGACACGCGCGTTCTAAGTAGCCGTCAGCACGCACA
GGTCGGCACACAATCTGCACCCGATTCTGCTGCTGCTGTATACCACAGAG
AAACTTGTGCATCATGTATATGTGTGTATACGTTTTGACGTTTTGATCCC
GTCCTGTACGGTAAACGCCGGGCAGTTCACATACAATTGCCGTAACTGTT
ATGGAAACGGGAGCATGATCATGTTAGCTGTACTCGGAGCTCGGTACACG
CGCACGCTATAGAGCGCGATACGCCGTCACCACCTGCACTACTCGTACAC
TTTGCATGCATACGTAGTAGTCTTTAAGTCCTGAGCAGCGCGCGCACTAT
TATAATAGAGCTCTACACCGTCGCCGCCTGCACAATTAATTACGTAGCGT
TTAATTCCCTCGTAAGTATTGTAGAGCAGGGAAATCGTTGCCCTGCTGTT
CCCTACAGTTATCATTTAATATAAGGTTGGGGGGAGGTGTGGATTTTTCT
GGCATTTTCCGGGCTTAGAAAAGCGGCCAAAAAACAGGCACGATATGATA
CGTAAAATTACCAGATACCAGGTAGCGTTTAATTCCTTCGTATATACCGA
GAGCTGAGAGGAAAACCACGCCGCGCACGTCGCAGGTGTACGGTCGGCCA
GTGGAGAAAATAGACAAGCCTCGCATGTTCAAGATATTGTTGGGGAAGCA
GGTGAGCGCATGCTGTCTCCGTGCTGTCCACATAGACCGCATGTACGCAT
GTACGAGTGCGAGTAGTAGACACGACCGCGTCGCCTTTCGGCTGGTCCCT
CTCCTAATACACTCAAGGTCTCCGTCATGTGCATGGAAGCATTCGCTGAC
GTGCAAATCGCGCAAATAAATGCGCGACACCATTGCCGCAAGGGGTATCC
CAGGCAGTGTTTGGTGGTAATTGATACAGTAGTAGCGTGTTGGCTTAAAT
CCCGTCGCCGCTCTAATAACGTGAACCGACTTATCCGATTTGTGCGCCAC
AGGTTATCGGGGAACCTGCAGTACCTGAAACAGACTGCAACAAGCCTCTG
CAGTGGGAGGACACTCGGCCACCAGGCTCGCAGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10194:741..3476+

>mRNA_L-digitata_M_contig10194.1.1 ID=mRNA_L-digitata_M_contig10194.1.1|Name=mRNA_L-digitata_M_contig10194.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=768bp|location=Sequence derived from alignment at L-digitata_M_contig10194:741..3476+ (Laminaria digitata LdigPH10_18mv male)
ATGACATGTCGTCGGAAAGAACGCGTAGGCGGCGGGCAAACGACCAAGCC
GACTCAAGCGGGAGGCGCACTGCAGCCGCCTCAGCCTTCGGCACGGTCGC
TCGCATACCCGCCGTCGGCACGTGCCCGGACGGCAAACCTCCCCCAACAA
CATGGTCATACTGCTGTACAAGACGGCACTGCTAGAGGTTTTGGGCGGGC
GAGAACGGCGAGCACGGCGAGCAGGAGGGGCGAAAGCTCTCGGCAAAGAG
ACATGTTCCTGCCTGCTACGGATTTCTCGGCGTACGAACCGGAGGAAAGC
AACAAGTTCTACACCGCTTCCACAGCGTGCACGCTCGGGAGGATATGCTC
CGACAGCTTCCTGATCCAGCCCGCTTGGTCGAGAGTTACCACGTCTCCGT
GGGGGGAAGCTGCGAAAGTATGCGGAGGTTACGGCAAGAGGCTGACTAAC
GGAACGAATTCTGTGGACGCCCCCGACTTCATGTATAGCAAGAGATTCGA
GGCACACGAGAGGAATCTGAGCTGGAAGAAGAGACCACGCGCGTTTGCGT
ACCACGGCGAGGCCAACACGGCTGTGTCCGACGACACTCCTCAGTTCTTC
CGCCGTCAGCACACACAGGTGTACGGTCGGCCAGTGGAGAAAATAGACAA
GCCTCGCATGTTCAAGATATTGTTGGGGAAGCAGGTTATCGGGGAACCTG
CAGTACCTGAAACAGACTGCAACAAGCCTCTGCAGTGGGAGGACACTCGG
CCACCAGGCTCGCAGTAG
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