mRNA_L-digitata_M_contig101900.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101900.1.1
Unique NamemRNA_L-digitata_M_contig101900.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: Q0FGZ0_SALBH (DNA topoisomerase 4 subunit B n=26 Tax=Rhodobacterales TaxID=204455 RepID=Q0FGZ0_SALBH)

HSP 1 Score: 574 bits (1479), Expect = 5.410e-201
Identity = 287/306 (93.79%), Postives = 299/306 (97.71%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFWAAILKGIRAYGELV+NRKA+QITRDDL+TGGCALVSCFIREPEFVGQTKDRLATTEAQRLVE AVRDHFDNWLA+DTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTE+FIVEGDSAGGSAKGARFRE+QALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGV LGTKFN+DDLRYEK+IIMTDADVDGAHIAALLMTFFYTQMRPLID GHLY+ACPPLYRLTQGA+R+YVADDA KE  + KGLGGKGKIDVQRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWAAILKGIRAYGELVNNRKASQITRDDLITGGCALVSCFIREPEFVGQTKDRLATTEAQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTELFIVEGDSAGGSAKGARFRESQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVGLGTKFNVDDLRYEKIIIMTDADVDGAHIAALLMTFFYTQMRPLIDGGHLYMACPPLYRLTQGARRIYVADDAEKEEMLKKGLGGKGKIDVQRFKGLGEMDAKDLKET 599
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BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A1G8S6Y7_9RHOB (DNA topoisomerase 4 subunit B n=7 Tax=Rhodobacterales TaxID=204455 RepID=A0A1G8S6Y7_9RHOB)

HSP 1 Score: 565 bits (1457), Expect = 1.180e-197
Identity = 286/306 (93.46%), Postives = 295/306 (96.41%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITR+DLLTGGCALVSCFIREPEFVGQTKDRLATTEA RLVE AVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCT KNREGTE+FIVEGDSAGGSAKGARFRE QALLPLKGKILNVLGAAS+KL SNAEI DLCEALGV +G KFN+DDLRYEK+IIMTDADVDGAHIA+LLMTFF+TQMRPLIDQGHLYLACPPLYRLTQGA+RLYVADDA KE  MAKGLGGKGKIDVQRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITREDLLTGGCALVSCFIREPEFVGQTKDRLATTEAARLVEGAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTAKNREGTELFIVEGDSAGGSAKGARFRETQALLPLKGKILNVLGAASSKLGSNAEISDLCEALGVGMGAKFNLDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDQGHLYLACPPLYRLTQGARRLYVADDAEKERMMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 599
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BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A238JHJ1_9RHOB (DNA topoisomerase 4 subunit B n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238JHJ1_9RHOB)

HSP 1 Score: 563 bits (1450), Expect = 1.360e-196
Identity = 281/306 (91.83%), Postives = 298/306 (97.39%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFWAAILKGIRAYGELVSN+KA+QI RDDL+TGGCALVSCFIREPEFVGQTKDRLAT EAQRLVEN+VRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDC++K+REGTE+FIVEGDSAGGSAKGAR RE QALLPLKGKILNVLGAASNKL+SNAEIRDLCEALGV LGTKFN+DDLRY+K+IIMTDADVDGAHIA+LLMTFF+TQMRP+ID GHLYLACPPLYRLTQGAKR+YV DDAAK+AAM KGLGGKGKIDVQRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWAAILKGIRAYGELVSNKKASQINRDDLITGGCALVSCFIREPEFVGQTKDRLATVEAQRLVENSVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCSSKSREGTELFIVEGDSAGGSAKGARNRETQALLPLKGKILNVLGAASNKLSSNAEIRDLCEALGVGLGTKFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLYLACPPLYRLTQGAKRIYVPDDAAKDAAMDKGLGGKGKIDVQRFKGLGEMDAKDLKET 599
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BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A238K7D8_9RHOB (DNA topoisomerase 4 subunit B n=21 Tax=Rhodobacterales TaxID=204455 RepID=A0A238K7D8_9RHOB)

HSP 1 Score: 561 bits (1447), Expect = 3.860e-196
Identity = 283/306 (92.48%), Postives = 296/306 (96.73%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFWAAILKGIRAYGELVSNRKA QITR+DL+TGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLR+EERLRRRQEKETARK+ATKKLRLPGKLTDC+ K+RE TEIFIVEGDSAGGSAKGARFRE QALLPL+GKILNVLGAAS+KL  N EIRDLCEALGV LGTKFN+DDLRY+KVIIMTDADVDGAHIA+LLMTFF+TQMRPLID GHLYLACPPLYRLTQGAKRLYVADDAAKEAA+ KGLGGKGKIDVQRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWAAILKGIRAYGELVSNRKATQITREDLMTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRSEERLRRRQEKETARKTATKKLRLPGKLTDCSAKSRENTEIFIVEGDSAGGSAKGARFREFQALLPLRGKILNVLGAASSKLGQNTEIRDLCEALGVGLGTKFNVDDLRYDKVIIMTDADVDGAHIASLLMTFFFTQMRPLIDHGHLYLACPPLYRLTQGAKRLYVADDAAKEAALKKGLGGKGKIDVQRFKGLGEMDAKDLKET 599
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BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A2T6AZE7_9RHOB (DNA topoisomerase 4 subunit B n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A2T6AZE7_9RHOB)

HSP 1 Score: 559 bits (1441), Expect = 3.140e-195
Identity = 278/306 (90.85%), Postives = 297/306 (97.06%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFWAAILKGIRAYGELV N+KAAQITR+DL+TGGCALVSCFIREPEFVGQTKDRLATTEAQRLVE AVRDHFDNWLA+DTKSAGAILDFLVLRAEER RR+QEKETARK+ATK+LRLPGKL+DCTNK REGTE+FIVEGDSAGGSAKGARFRE+QALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGV LG+KFN+DDLRY+K+IIMTDADVDGAHIA+LLMTFFYTQMRPLID GHLYLACPPLYRLTQGAKR+YV+DDA K+  MAKGLGGKGKID+QRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWAAILKGIRAYGELVGNKKAAQITREDLITGGCALVSCFIREPEFVGQTKDRLATTEAQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERQRRKQEKETARKTATKRLRLPGKLSDCTNKAREGTELFIVEGDSAGGSAKGARFRESQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVGLGSKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFYTQMRPLIDNGHLYLACPPLYRLTQGAKRVYVSDDAEKDRIMAKGLGGKGKIDMQRFKGLGEMDAKDLKET 599
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BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A1Y5STK9_9RHOB (DNA topoisomerase 4 subunit B n=1 Tax=Roseisalinus antarcticus TaxID=254357 RepID=A0A1Y5STK9_9RHOB)

HSP 1 Score: 555 bits (1429), Expect = 2.070e-193
Identity = 277/306 (90.52%), Postives = 295/306 (96.41%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFWAAILKGIRAYGELV+NRKA  ITRDDL+TGGCALVSCFIREPEFVGQTKDRLATTEA RLVENAVRDHFDNWLA+DTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCT K+REGTE+FIVEGDSAGGSAKGARFRE QALLPLKGKILNVLGAAS+KLT+NAEI DLCEALGV+LGT+FN+DDLRY+K+IIMTDADVDGAHIA+LLMTFF+TQMRPLID GHLYLACPPLYRLTQGAKR+YV+DD  K+  +AKGLGGKGKIDVQRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWAAILKGIRAYGELVNNRKAKDITRDDLVTGGCALVSCFIREPEFVGQTKDRLATTEAARLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTAKSREGTELFIVEGDSAGGSAKGARFRETQALLPLKGKILNVLGAASSKLTTNAEISDLCEALGVRLGTRFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLYRLTQGAKRMYVSDDREKDIWLAKGLGGKGKIDVQRFKGLGEMDAKDLKET 599
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BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A1H9EKT4_9RHOB (DNA topoisomerase 4 subunit B n=1 Tax=Thalassobius taeanensis TaxID=657014 RepID=A0A1H9EKT4_9RHOB)

HSP 1 Score: 553 bits (1426), Expect = 5.910e-193
Identity = 274/306 (89.54%), Postives = 294/306 (96.08%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFWAAILKGIRAYGEL++N+KA QITRDDL+TGGCALVSCFI EPEFVGQTKDRLAT EAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKET RK+ATKKLRLPGKLTDCT+K+REGTE+FIVEGDSAGGSAKGAR R NQALLPLKGKILNVLGAAS+KLT+NAEI DLCEALGV +GT+FN++DLRY+K+IIMTDADVDGAHIAALLMTFF+TQMRPLIDQGHLYLACPPLYRLTQG KR+YV+DDA KE  +AKGLGGKGKIDVQRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWAAILKGIRAYGELINNKKATQITRDDLITGGCALVSCFIAEPEFVGQTKDRLATVEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKKLRLPGKLTDCTSKSREGTELFIVEGDSAGGSAKGARNRNNQALLPLKGKILNVLGAASSKLTTNAEISDLCEALGVSMGTRFNVEDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPLIDQGHLYLACPPLYRLTQGPKRVYVSDDAEKERVLAKGLGGKGKIDVQRFKGLGEMDAKDLKET 599
[Close]
BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A1H3KBU8_9RHOB (DNA topoisomerase 4 subunit B n=1 Tax=Citreimonas salinaria TaxID=321339 RepID=A0A1H3KBU8_9RHOB)

HSP 1 Score: 553 bits (1424), Expect = 1.190e-192
Identity = 275/306 (89.87%), Postives = 295/306 (96.41%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFW+AILKGIRAYGELV NRKAAQITRDDL+ GGCALVSCFIREPEFVGQTKDRLAT++AQRLVE +VRDHFDNWLA+DTKSAGAILDFLVLRAEERLRR+QEKET RKSATKKLRLPGKLTDCT+K REGTE+FIVEGDSAGGSAKGARFRE QALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGV LG+KFNIDDLRYEK+IIMTDADVDGAHIA+LLMTFFY+QMRPLID GHLYLACPPL+RLTQGA+R+YVA+DA KE  +A+GLGGKGKID+QRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWSAILKGIRAYGELVGNRKAAQITRDDLVAGGCALVSCFIREPEFVGQTKDRLATSDAQRLVEQSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKLTDCTSKTREGTELFIVEGDSAGGSAKGARFRETQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVGLGSKFNIDDLRYEKIIIMTDADVDGAHIASLLMTFFYSQMRPLIDNGHLYLACPPLFRLTQGARRVYVANDAEKERLLAQGLGGKGKIDLQRFKGLGEMDAKDLKET 599
[Close]
BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A061SSV2_9RHOB (DNA topoisomerase 4 subunit B n=27 Tax=root TaxID=1 RepID=A0A061SSV2_9RHOB)

HSP 1 Score: 549 bits (1414), Expect = 3.890e-191
Identity = 273/306 (89.22%), Postives = 290/306 (94.77%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHEAGFWAAILKGI+AYGEL  NRKA  ITR+DL+TGGCALVSCFIREPEFVGQTKDRLATTEAQR+VENAVRDHFDNWLA+DTKSAGAILDFLVLRAEERLRRRQEKETARK+ATKKLRLPGKLTDCT+K+REGTE+FIVEGDSAGGS KGAR R NQALLPLKGKILNVLGAASNKLT+NAEI DLCEALGV +GTKFN+DDLRY+K+IIMTDADVDGAHIAALLMTFF+TQMRPLID GHLYLACPPLYRLTQGAKR+YVADD  K   + KGLGGKGKIDVQRFKGLGEMDAKDLKET
Sbjct:  294 PEGGTHEAGFWAAILKGIKAYGELAGNRKAGTITREDLITGGCALVSCFIREPEFVGQTKDRLATTEAQRMVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKTATKKLRLPGKLTDCTSKSREGTELFIVEGDSAGGSGKGARNRNNQALLPLKGKILNVLGAASNKLTTNAEISDLCEALGVGMGTKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPLIDDGHLYLACPPLYRLTQGAKRIYVADDTEKNYWLEKGLGGKGKIDVQRFKGLGEMDAKDLKET 599
[Close]
BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Match: A0A3E0MQ62_9PROT (DNA gyrase subunit B (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3E0MQ62_9PROT)

HSP 1 Score: 542 bits (1396), Expect = 2.080e-190
Identity = 268/306 (87.58%), Postives = 289/306 (94.44%), Query Frame = 1 
Query:    1 PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSAGGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQLGTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYLACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDAKDLKET 918
            PEGGTHE+GFWAAILKGIRAYGE ++NRKA  ITR+DL+TGGCALVSCFIREPEFVGQTKDRLAT EA RLVEN+VRDHFDNWLA+DTKSAGAILDFLVLRAEER+RRRQEKETARKSATKKLRLPGKLTDCT KNREGTE+FIVEGDSAGGSAKGAR RENQALLPLKGKILNVLGAASNKL  NAEI DLCEALGV +GT+FN+DDLRY+K+IIMTDADVDGAHIA+LLMTFFYTQMRPLID GHL+LACPPLYRLTQGAKRLYV++D  K+  + KG+GGKGKIDVQRFKGLGEMDAKDLKET
Sbjct:  157 PEGGTHESGFWAAILKGIRAYGERINNRKAKDITREDLITGGCALVSCFIREPEFVGQTKDRLATNEAARLVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERMRRRQEKETARKSATKKLRLPGKLTDCTAKNREGTELFIVEGDSAGGSAKGARNRENQALLPLKGKILNVLGAASNKLGQNAEINDLCEALGVGMGTRFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFYTQMRPLIDNGHLFLACPPLYRLTQGAKRLYVSNDLEKDTYLTKGIGGKGKIDVQRFKGLGEMDAKDLKET 462
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q0FGZ0_SALBH5.410e-20193.79DNA topoisomerase 4 subunit B n=26 Tax=Rhodobacter... [more]
A0A1G8S6Y7_9RHOB1.180e-19793.46DNA topoisomerase 4 subunit B n=7 Tax=Rhodobactera... [more]
A0A238JHJ1_9RHOB1.360e-19691.83DNA topoisomerase 4 subunit B n=1 Tax=Pelagimonas ... [more]
A0A238K7D8_9RHOB3.860e-19692.48DNA topoisomerase 4 subunit B n=21 Tax=Rhodobacter... [more]
A0A2T6AZE7_9RHOB3.140e-19590.85DNA topoisomerase 4 subunit B n=4 Tax=Rhodobactera... [more]
A0A1Y5STK9_9RHOB2.070e-19390.52DNA topoisomerase 4 subunit B n=1 Tax=Roseisalinus... [more]
A0A1H9EKT4_9RHOB5.910e-19389.54DNA topoisomerase 4 subunit B n=1 Tax=Thalassobius... [more]
A0A1H3KBU8_9RHOB1.190e-19289.87DNA topoisomerase 4 subunit B n=1 Tax=Citreimonas ... [more]
A0A061SSV2_9RHOB3.890e-19189.22DNA topoisomerase 4 subunit B n=27 Tax=root TaxID=... [more]
A0A3E0MQ62_9PROT2.080e-19087.58DNA gyrase subunit B (Fragment) n=1 Tax=Proteobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101900contigL-digitata_M_contig101900:1..918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388399.SSE37_14093
Preferred nameparE
PFAMsDNA_gyraseB,DNA_gyraseB_C,HATPase_c,Toprim
Model size918
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02622
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-202
EggNOG OGsCOG0187@1|root,COG0187@2|Bacteria,1MVH1@1224|Proteobacteria,2TQZV@28211|Alphaproteobacteria
DescriptionTopoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
Cds size918
COG categoryL
BRITEko00000,ko01000,ko02048,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.2133274-CDS-L-digitata_M_contig101900:0..9181682406624.2133274-CDS-L-digitata_M_contig101900:0..918Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101900 1..918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101900.1.1prot_L-digitata_M_contig101900.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101900 1..918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101900.1.1

>prot_L-digitata_M_contig101900.1.1 ID=prot_L-digitata_M_contig101900.1.1|Name=mRNA_L-digitata_M_contig101900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=306bp
PEGGTHEAGFWAAILKGIRAYGELVSNRKAAQITRDDLLTGGCALVSCFI
REPEFVGQTKDRLATTEAQRLVENAVRDHFDNWLASDTKSAGAILDFLVL
RAEERLRRRQEKETARKSATKKLRLPGKLTDCTNKNREGTEIFIVEGDSA
GGSAKGARFRENQALLPLKGKILNVLGAASNKLTSNAEIRDLCEALGVQL
GTKFNIDDLRYEKVIIMTDADVDGAHIAALLMTFFYTQMRPLIDQGHLYL
ACPPLYRLTQGAKRLYVADDAAKEAAMAKGLGGKGKIDVQRFKGLGEMDA
KDLKET
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mRNA from alignment at L-digitata_M_contig101900:1..918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101900.1.1 ID=mRNA_L-digitata_M_contig101900.1.1|Name=mRNA_L-digitata_M_contig101900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=918bp|location=Sequence derived from alignment at L-digitata_M_contig101900:1..918+ (Laminaria digitata LdigPH10_18mv male)
CCAGAGGGCGGCACCCATGAGGCTGGCTTTTGGGCCGCGATTCTCAAAGG
CATCCGCGCCTATGGCGAACTGGTAAGCAACCGAAAAGCCGCACAAATCA
CCCGCGACGACCTGCTGACCGGCGGCTGCGCGCTGGTGTCCTGCTTTATC
CGCGAGCCGGAATTTGTCGGCCAGACCAAGGACCGCCTTGCCACGACAGA
GGCCCAGCGCCTTGTCGAAAACGCCGTCCGCGACCATTTCGATAACTGGT
TGGCATCAGACACAAAATCCGCCGGCGCGATCCTCGATTTCCTTGTCCTG
CGCGCCGAGGAGCGCCTGCGCCGCCGTCAGGAAAAGGAAACCGCCCGCAA
ATCCGCGACCAAGAAACTGCGCCTGCCGGGCAAGCTGACCGACTGCACCA
ACAAGAATCGCGAAGGCACAGAGATCTTCATCGTCGAGGGCGACTCGGCC
GGGGGATCGGCCAAAGGCGCGCGCTTCCGCGAAAACCAGGCGCTGTTGCC
GCTCAAAGGCAAGATCCTGAACGTGCTGGGGGCGGCGTCCAACAAACTGA
CCTCCAACGCCGAAATCCGCGATCTGTGCGAAGCGCTTGGCGTGCAGCTG
GGGACCAAGTTCAACATTGATGACCTGCGTTACGAAAAGGTTATCATCAT
GACCGACGCGGACGTCGACGGCGCGCATATCGCGGCGCTGCTCATGACGT
TTTTCTACACCCAGATGCGTCCGCTGATTGATCAGGGGCACCTCTATCTG
GCCTGCCCGCCGCTGTACCGGCTGACGCAGGGGGCCAAACGGCTTTACGT
CGCCGACGATGCCGCCAAGGAGGCCGCGATGGCCAAGGGCCTCGGCGGCA
AGGGCAAGATCGACGTCCAGCGGTTCAAGGGTCTGGGAGAGATGGACGCC
AAGGACCTCAAGGAAACC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101900:1..918+

>mRNA_L-digitata_M_contig101900.1.1 ID=mRNA_L-digitata_M_contig101900.1.1|Name=mRNA_L-digitata_M_contig101900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=918bp|location=Sequence derived from alignment at L-digitata_M_contig101900:1..918+ (Laminaria digitata LdigPH10_18mv male)
CCAGAGGGCGGCACCCATGAGGCTGGCTTTTGGGCCGCGATTCTCAAAGG
CATCCGCGCCTATGGCGAACTGGTAAGCAACCGAAAAGCCGCACAAATCA
CCCGCGACGACCTGCTGACCGGCGGCTGCGCGCTGGTGTCCTGCTTTATC
CGCGAGCCGGAATTTGTCGGCCAGACCAAGGACCGCCTTGCCACGACAGA
GGCCCAGCGCCTTGTCGAAAACGCCGTCCGCGACCATTTCGATAACTGGT
TGGCATCAGACACAAAATCCGCCGGCGCGATCCTCGATTTCCTTGTCCTG
CGCGCCGAGGAGCGCCTGCGCCGCCGTCAGGAAAAGGAAACCGCCCGCAA
ATCCGCGACCAAGAAACTGCGCCTGCCGGGCAAGCTGACCGACTGCACCA
ACAAGAATCGCGAAGGCACAGAGATCTTCATCGTCGAGGGCGACTCGGCC
GGGGGATCGGCCAAAGGCGCGCGCTTCCGCGAAAACCAGGCGCTGTTGCC
GCTCAAAGGCAAGATCCTGAACGTGCTGGGGGCGGCGTCCAACAAACTGA
CCTCCAACGCCGAAATCCGCGATCTGTGCGAAGCGCTTGGCGTGCAGCTG
GGGACCAAGTTCAACATTGATGACCTGCGTTACGAAAAGGTTATCATCAT
GACCGACGCGGACGTCGACGGCGCGCATATCGCGGCGCTGCTCATGACGT
TTTTCTACACCCAGATGCGTCCGCTGATTGATCAGGGGCACCTCTATCTG
GCCTGCCCGCCGCTGTACCGGCTGACGCAGGGGGCCAAACGGCTTTACGT
CGCCGACGATGCCGCCAAGGAGGCCGCGATGGCCAAGGGCCTCGGCGGCA
AGGGCAAGATCGACGTCCAGCGGTTCAAGGGTCTGGGAGAGATGGACGCC
AAGGACCTCAAGGAAACC
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