mRNA_L-digitata_M_contig101892.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: A0A2D5EA67_9GAMM (Tyr recombinase domain-containing protein n=11 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2D5EA67_9GAMM) HSP 1 Score: 313 bits (802), Expect = 1.010e-102 Identity = 158/172 (91.86%), Postives = 160/172 (93.02%), Query Frame = 1
Query: 184 VTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYNERVRNNNTVKAIVATSINFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQIIHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
+TVNQK+GGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDI NERVRNNNTVKAIVAT INFL WVQQNIATERLI GVDDADKRYQ KL Q VYAHRTGR IIHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSD NVSRKLRGL S K QADH
Sbjct: 1 MTVNQKDGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIXNERVRNNNTVKAIVATXINFLXWVQQNIATERLIXGVDDADKRYQXKLXQXVYAHRTGRXIIHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDXNVSRKLRGLXSXKXQADH 172
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: A0A7Y6V4C3_9GAMM (Site-specific integrase n=1 Tax=Halomonas titanicae TaxID=664683 RepID=A0A7Y6V4C3_9GAMM) HSP 1 Score: 242 bits (618), Expect = 5.410e-75 Identity = 117/170 (68.82%), Postives = 142/170 (83.53%), Query Frame = 1
Query: 190 VNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYNERVRNNNTVKAIVATSINFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQIIHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
VN K+GGTLG YARNLSHLVRFCY +K++F DL+H HIDEFI++LCQETD YNERVRNNNTVK+IV+T+INFL+WVQ+NI T+RLIAGV+ +RYQIKLK+EVYA +TGR++I + FPM IPR+T PIST NIR LW+ LEASR D VSRKL+G+FS QQ +H
Sbjct: 3 VNLKDGGTLGCYARNLSHLVRFCYTKKLDFVDLRHIHIDEFIFQLCQETDAYNERVRNNNTVKSIVSTTINFLMWVQENIVTDRLIAGVNQPGRRYQIKLKREVYALKTGRRMIQDTFPMKIPRSTRAEVKPISTANIRILWEKLEASRIDAKVSRKLQGIFSSTQQTEH 172
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: A0A4U1ZRS5_9VIBR (Site-specific integrase n=1 Tax=Vibrio kanaloae TaxID=170673 RepID=A0A4U1ZRS5_9VIBR) HSP 1 Score: 205 bits (522), Expect = 4.550e-60 Identity = 105/230 (45.65%), Postives = 147/230 (63.91%), Query Frame = 1
Query: 10 QLYRLIKNVRFPTIDRFDSGTGEIFLNDRVRYCYYSFVWPNGSPCVIAEMYLCDRSRTVTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYNERVRNNNTVKAIVATSINFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQIIHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
QLY LI V FP ++RFD+ TGE+ +R YYSF WP+GS C+ EM+L D S ++ +GGT+G YARNL+HLVR+C+ K+ F DL+ S+ID+ I EL E + +NER RNNNT+K I++ ++ FL W+Q ER I GVD KRYQ+KL + +R G+ VFP IP ATT PI+ I+ LW+TL S+S ++++L FS+++Q DH
Sbjct: 5 QLYSLIPYVEFPAVERFDNFTGEVISTKEIREGYYSFRWPDGSTCMPVEMFLLDISNEKKISVSDGGTVGGYARNLTHLVRYCFKNKIQFWDLQTSNIDDLISELSTEVNEFNERERNNNTIKTIISNAMTFLKWIQNQHFPERNIIGVDSQYKRYQVKLT--ISLNRYGKPC--EVFPSKIPNATTQPKKPIADKIIKLLWETLNQSKSSTGINKRLMKHFSKQEQKDH 230
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: UPI00107ED0A9 (site-specific integrase n=2 Tax=Aliivibrio fischeri TaxID=668 RepID=UPI00107ED0A9) HSP 1 Score: 194 bits (493), Expect = 9.020e-56 Identity = 102/230 (44.35%), Postives = 137/230 (59.57%), Query Frame = 1
Query: 10 QLYRLIKNVRFPTIDRFDSGTGEIFLNDRVRYCYYSFVWPNGSPCVIAEMYLCDRSRTVTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYNERVRNNNTVKAIVATSINFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQIIHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
QLY I ++ +P +DRFD TGE+ + YYS+ WP+GS C+ EM+L S T T+ +GGT+G YARNL+HLVR+CY + V F DL+ SHIDE I L E + YNERVRNNNTV I++ I FL W+Q + I GVD A KR+QIKL + + G + FP +P + T P S I+ LWDTL S+ N++++L FS +Q DH
Sbjct: 5 QLYTFISHIEYPAVDRFDPLTGEVISIIKKYEGYYSYRWPDGSTCIPIEMFLVYLSDTKTIKISDGGTVGVYARNLTHLVRYCYTKGVQFWDLQTSHIDELISNLSSELNEYNERVRNNNTVLTIISNVITFLKWIQTEYFPTQNIIGVDSACKRHQIKLATGIKNYGKGTGRAYEYFPSKLPTSITQAKKPTSNQIIKLLWDTLNKSKFSLNINKRLMKYFSIAEQKDH 234
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: UPI0004035577 (site-specific integrase n=1 Tax=Vibrio harveyi TaxID=669 RepID=UPI0004035577) HSP 1 Score: 172 bits (435), Expect = 3.770e-47 Identity = 101/236 (42.80%), Postives = 133/236 (56.36%), Query Frame = 1
Query: 7 SQLYRLIKNVRFPTIDRFDSGTGEIFLNDRVRYCYYSFVWPNGSPCVIAEMYLCD--RSRTVTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYN-ERVRNNNTVKAIVATSI-NFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQI-IHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
+QLY LI NV FP++ RFD TGE+ N + Y F WP+G+ C EMYL VT+NQ++GGT+G YA LSHLVR+CY + V F +L +HIDE + EL E R RNN+T++ I+ I FL W Q + I GVD +RYQIKLK R GR VFP +P + T T I+T I+KLWDTL SR ++ +L LF ++ Q +H
Sbjct: 5 NQLYTLIPNVEFPSVLRFDESTGEVLTNKDISEGIYLFHWPDGTTCFPVEMYLAHLVSEGDVTINQEDGGTVGTYASALSHLVRYCYKKNVEFWELTTAHIDELVSELVAEKKSDGLTRARNNDTIRLIILPKIVAFLKWFQAEYYPTQYIIGVDRTKQRYQIKLKIIQKRCRAGRDFGPFEVFPTRLPTSATKPKTAIATSVIKKLWDTLNYSRGVMRLNDRLLQLFDKEDQENH 240
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: UPI000AC93EA1 (site-specific integrase n=1 Tax=Vibrio harveyi TaxID=669 RepID=UPI000AC93EA1) HSP 1 Score: 168 bits (425), Expect = 1.070e-46 Identity = 100/236 (42.37%), Postives = 132/236 (55.93%), Query Frame = 1
Query: 7 SQLYRLIKNVRFPTIDRFDSGTGEIFLNDRVRYCYYSFVWPNGSPCVIAEMYLCD--RSRTVTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYN-ERVRNNNTVKAIVATSI-NFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQI-IHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
+QLY LI +V FP++ RFD TGE+ N + Y F WP+G+ C EMYL VT+NQ +GGT+G YA LSHLVR+CY + V F +L +HIDE + EL E R RNN+T++ I+ I FL W Q + I GVD +RYQIKLK R GR VFP +P + T T I+T I+KLWDTL SR ++ +L LF ++ Q +H
Sbjct: 5 NQLYTLIPDVEFPSVLRFDESTGEVLTNKDISEGIYLFHWPDGTTCFPVEMYLAHLVSEGDVTINQDDGGTVGTYASALSHLVRYCYKKNVEFWELTTAHIDELVSELVAEKKSDGLTRARNNDTIRLIILPKIVAFLKWFQAEYYPAQYIIGVDRPKQRYQIKLKIIQKRCRAGRDFGPFEVFPTRLPISATKPKTAIATSVIKKLWDTLNYSRGVMRLNDRLLQLFDKEDQENH 240
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: UPI001C1300FD (site-specific integrase n=2 Tax=Vibrio TaxID=662 RepID=UPI001C1300FD) HSP 1 Score: 164 bits (416), Expect = 1.620e-44 Identity = 89/231 (38.53%), Postives = 131/231 (56.71%), Query Frame = 1
Query: 13 LYRLIKNVRFPTIDRFDSGTGEIFLNDRVRYCYYSFVWPNGSPCVIAEMYLCDRSRTVTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYNERVRNNNTVK-AIVATSINFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQI-IHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
+Y I ++ +P++ RFD TGE+ R Y F WP+G+ C +M+L S +N+ +GGT+G YA NLSH+VRFC+ +K+ F +L+ HID+FI +L E ER R NNT+K I+ +I FL W+Q + GV+D RYQI LK++ R GR V+P ++P + T TPI T I+KLWDTL A+R ++ + LF + + H
Sbjct: 1 MYEFIDDIEYPSVSRFDYQTGEVIQGVDKRERVYLFYWPDGNTCFPVQMFLSHISDFKKINKLDGGTVGTYAINLSHIVRFCFKKKIQFHELRSVHIDDFIAQLVIEKKSNGERARVNNTIKNQILTQTITFLKWLQAEHYPLLNLIGVNDRKVRYQIALKKKT-KRRGGRNFGTAEVYPTSLPNSVTKGKTPIPTETIKKLWDTLNATRDGMKLNSRFEALFDEEDKKAH 230
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: A0A4Q7I663_VIBVL (Site-specific integrase n=3 Tax=Vibrionaceae TaxID=641 RepID=A0A4Q7I663_VIBVL) HSP 1 Score: 157 bits (396), Expect = 1.580e-41 Identity = 86/233 (36.91%), Postives = 131/233 (56.22%), Query Frame = 1
Query: 7 SQLYRLIKNVRFPTIDRFDSGTGEIFLNDRVRYCYYSFVWPNGSPCVIAEMYLCDRSRTVTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYNERVRNNNTVK-AIVATSINFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQIIHN-VFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
+QL+ + ++ +P++ RFD TGE+ R Y F WP+G C EMYL D S T V + +GGT+G YA +L+HLVR+CY KV F +L+ + IDE I +L + R R+N+T++ I+ + FL W+Q+ + + GVD R+QIKLK + G+ VFP +PR+T TPIS I +LWD++ +RS+ ++ +L LF Q +H
Sbjct: 5 NQLWTFVHDIEYPSVLRFDHQTGEVISTVDKREGVYQFRWPDGRTCFPVEMYLSDISDTKRVKKSDGGTVGTYATDLTHLVRYCYHEKVQFHELRTADIDELIRQLVADKRSNGRRARSNDTIRQGILPKIVAFLKWLQKEHYPQLNLIGVDTTKVRFQIKLKVVKKTGKNGKGFGETEVFPTKLPRSTPQLKTPISAAVINQLWDSINDTRSEMRLNDRLLKLFDETDQEEH 237
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: A0A2S7W1K8_PHOAN (Tyr recombinase domain-containing protein n=8 Tax=Vibrionales TaxID=135623 RepID=A0A2S7W1K8_PHOAN) HSP 1 Score: 152 bits (383), Expect = 1.180e-39 Identity = 91/236 (38.56%), Postives = 126/236 (53.39%), Query Frame = 1
Query: 7 SQLYRLIKNVRFPTIDRFDSGTGEIFLNDRVRYCYYSFVWPNGSPCVIAEMYLCD--RSRTVTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYN-ERVRNNNTVKAIVATS-INFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQI-IHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFSRKQQADH 699
SQLY I ++ FP+I RFD +GE+ N + Y F WP+G+ C EMYL VT+ +++GGT+G YA LSHLVR+CY + V F DL HIDE + EL E R RNN+T++ I+ + FL W+Q + I GVD +RYQ+KLK R GR VF +P + T T I+ I++LWDTL + ++ L LF ++ Q H
Sbjct: 5 SQLYTFISDMEFPSILRFDESSGEVLTNKDISKGIYHFRWPDGTTCFPVEMYLAHLVSEGAVTITREDGGTVGTYASALSHLVRYCYKKNVEFWDLTTVHIDELVSELVAEKKSDGLTRARNNDTIRLIILPKFVAFLKWLQAEHFPTQYIIGVDRPKQRYQVKLKIIQKRGREGRNFGPSEVFLTRLPTSATKPKTAIAVSVIKRLWDTLNYEKGVMRLNDHLLQLFDKEDQEAH 240
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Match: A0A2P5LEI0_9PROT (Tyr recombinase domain-containing protein n=1 Tax=Methylotenera sp. TaxID=2051956 RepID=A0A2P5LEI0_9PROT) HSP 1 Score: 130 bits (327), Expect = 1.390e-31 Identity = 86/227 (37.89%), Postives = 115/227 (50.66%), Query Frame = 1
Query: 10 QLYRLIKNVRFPTIDRFDSGTGEIFLNDRVRY--CYYSFVWPNGSPCVIAEMYLCDRSRTVTVNQKNGGTLGNYARNLSHLVRFCYARKVNFADLKHSHIDEFIYELCQETDIYN--ERVRNNNTVKAIVATSINFLVWVQQNIATERLIAGVDDADKRYQIKLKQEVYAHRTGRQIIHNVFPMNIPRATTTNATPISTINIRKLWDTLEASRSDKNVSRKLRGLFS 678
QLYRLI NV + + + + RV++ + F WP+GSPCV+ E+YL RS VTVN +GGTLG A LSH++RFC+ K +F +L+ + +FI L E +N RNNNTV IV +I +L W+Q NI LI G D I LK Y GR+ + FP P+AT +PI R LW+ + S K G FS
Sbjct: 6 QLYRLIPNVELDDAASYSPLSRK--FSSRVKHTPALFVFTWPDGSPCVLMELYLQARSLEVTVNSIDGGTLGTEASQLSHIIRFCWQIKKDFWELEQQDLRDFITYLMSEKHPHNPSRSKRNNNTVNNIVDLTIRYLKWLQDNIFVNLLIVGSKQEDSN--IWLKTVNYTDWRGRRSVALKFPNLPPKATQEPKSPIGRDMKRLLWNAISTMADPSKQSLKYIGQFS 228 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101892.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101892.2.1 >prot_L-digitata_M_contig101892.2.1 ID=prot_L-digitata_M_contig101892.2.1|Name=mRNA_L-digitata_M_contig101892.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=233bp MTSQLYRLIKNVRFPTIDRFDSGTGEIFLNDRVRYCYYSFVWPNGSPCVIback to top mRNA from alignment at L-digitata_M_contig101892:222..920+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101892.2.1 ID=mRNA_L-digitata_M_contig101892.2.1|Name=mRNA_L-digitata_M_contig101892.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=699bp|location=Sequence derived from alignment at L-digitata_M_contig101892:222..920+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101892:222..920+ >mRNA_L-digitata_M_contig101892.2.1 ID=mRNA_L-digitata_M_contig101892.2.1|Name=mRNA_L-digitata_M_contig101892.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=699bp|location=Sequence derived from alignment at L-digitata_M_contig101892:222..920+ (Laminaria digitata LdigPH10_18mv male)back to top |