mRNA_L-digitata_M_contig101888.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101888.1.1
Unique NamemRNA_L-digitata_M_contig101888.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A094BZJ8_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4513 (FW-928) TaxID=1420907 RepID=A0A094BZJ8_9PEZI)

HSP 1 Score: 61.6 bits (148), Expect = 2.390e-10
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRLI 150
            LK+W  KQ  +P ++++AR +LA+ ASSAASE +FSVGG  +TKKRNRL+
Sbjct:  134 LKYWQAKQYQYPVISRIARDYLAIPASSAASERIFSVGGDIVTKKRNRLL 183
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A094H2Y9_9PEZI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=unclassified Pseudogymnoascus TaxID=2637121 RepID=A0A094H2Y9_9PEZI)

HSP 1 Score: 61.6 bits (148), Expect = 3.540e-10
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRLI 150
            LK+W  KQ  +P ++++AR +LA+ ASSAASE +FSVGG  +TKKRNRL+
Sbjct:  143 LKYWQAKQFQYPVISRIARDYLAIPASSAASERIFSVGGDIVTKKRNRLL 192
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A094GJR2_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4518 (FW-2643) TaxID=1420913 RepID=A0A094GJR2_9PEZI)

HSP 1 Score: 61.6 bits (148), Expect = 4.550e-10
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRLI 150
            LK+W  KQ  +P ++++AR +LA+ ASSAASE +FSVGG  +TKKRNRL+
Sbjct:  166 LKYWQAKQYQYPVISRIARDYLAIPASSAASERIFSVGGDIVTKKRNRLL 215
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A094EQI6_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-103 TaxID=1420912 RepID=A0A094EQI6_9PEZI)

HSP 1 Score: 61.6 bits (148), Expect = 5.810e-10
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRLI 150
            LK+W  KQ  +P ++++AR +LA+ ASSAASE +FSVGG  +TKKRNRL+
Sbjct:  196 LKYWQAKQYQYPVISRIARDYLAIPASSAASERIFSVGGDIVTKKRNRLL 245
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A094AZ50_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-3775 TaxID=1420901 RepID=A0A094AZ50_9PEZI)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRLI 150
            LK+W  KQ  +P ++++AR +LA+ ASSAASE +FSVGG  +TKKRNRL+
Sbjct:  666 LKYWQAKQYQYPVISQIARDYLAIPASSAASERIFSVGGDIVTKKRNRLL 715
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: T1G7Q5_HELRO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G7Q5_HELRO)

HSP 1 Score: 56.6 bits (135), Expect = 2.910e-9
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 KWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRL 147
            KWWA   S FPT+AK+ARK+LA+ A+S  SE +FS+ G  + ++RNRL
Sbjct:   22 KWWADNASRFPTIAKVARKYLAIPATSVPSEQIFSMSGQIMNERRNRL 69
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A2P6FGM7_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus destructans TaxID=655981 RepID=A0A2P6FGM7_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 3.240e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRL 147
            LK+W  KQ  +P +A +A+ HLA+ A+SA SE +FSVGG  ITKKRNRL
Sbjct:   99 LKYWQSKQFQYPLIASIAKDHLAIPATSADSERVFSVGGDIITKKRNRL 147
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A094FB13_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4518 (FW-2643) TaxID=1420913 RepID=A0A094FB13_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 3.280e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRL 147
            LK+W  KQ  +P +A++AR HLA+ A+SAASE +FS G   ITKKRNRL
Sbjct:  100 LKYWCAKQYQYPVIARIARDHLAIPATSAASERVFSNGSDIITKKRNRL 148
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A094A553_9PEZI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=unclassified Pseudogymnoascus TaxID=2637121 RepID=A0A094A553_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 3.380e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRL 147
            LK+W  KQ  +P +A++AR HLA+ A+SAASE +FS G   ITKKRNRL
Sbjct:  100 LKYWCAKQYQYPVIARIARDHLAIPATSAASERVFSNGSDIITKKRNRL 148
[Close]
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Match: A0A094G1R4_9PEZI (Uncharacterized protein n=1 Tax=Pseudogymnoascus sp. VKM F-4518 (FW-2643) TaxID=1420913 RepID=A0A094G1R4_9PEZI)

HSP 1 Score: 59.3 bits (142), Expect = 5.570e-9
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRL 147
            LK+WA KQ  +P +A +A+ HLA+ A+SA SE +FSVGG  ITKKRNRL
Sbjct:  739 LKFWASKQYQYPILAAIAKDHLAIPATSAESERVFSVGGDIITKKRNRL 787
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101888.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A094BZJ8_9PEZI2.390e-1058.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
A0A094H2Y9_9PEZI3.540e-1058.00Dimer_Tnp_hAT domain-containing protein n=2 Tax=un... [more]
A0A094GJR2_9PEZI4.550e-1058.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
A0A094EQI6_9PEZI5.810e-1058.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
A0A094AZ50_9PEZI1.170e-958.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
T1G7Q5_HELRO2.910e-954.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=He... [more]
A0A2P6FGM7_9PEZI3.240e-959.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
A0A094FB13_9PEZI3.280e-959.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
A0A094A553_9PEZI3.380e-959.18Dimer_Tnp_hAT domain-containing protein n=2 Tax=un... [more]
A0A094G1R4_9PEZI5.570e-961.22Uncharacterized protein n=1 Tax=Pseudogymnoascus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101888contigL-digitata_M_contig101888:64..213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6412.HelroP90391
PFAMsDimer_Tnp_hAT
Model size150
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.76e-10
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size150
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406624.028395-CDS-L-digitata_M_contig101888:63..2131682406624.028395-CDS-L-digitata_M_contig101888:63..213Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101888 64..213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101888.1.1prot_L-digitata_M_contig101888.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101888 64..213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101888.1.1

>prot_L-digitata_M_contig101888.1.1 ID=prot_L-digitata_M_contig101888.1.1|Name=mRNA_L-digitata_M_contig101888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=50bp
LKWWAGKQSTFPTVAKLARKHLAMQASSAASESLFSVGGSTITKKRNRLI
back to top

mRNA from alignment at L-digitata_M_contig101888:64..213-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101888.1.1 ID=mRNA_L-digitata_M_contig101888.1.1|Name=mRNA_L-digitata_M_contig101888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig101888:64..213- (Laminaria digitata LdigPH10_18mv male)
CTTAAGTGGTGGGCAGGAAAGCAAAGCACGTTTCCGACCGTCGCCAAGTT
GGCCCGCAAGCATCTCGCAATGCAAGCATCGTCCGCCGCATCGGAAAGTC
TGTTCTCAGTAGGAGGAAGCACGATCACGAAGAAGCGCAATCGCTTGATT
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101888:64..213-

>mRNA_L-digitata_M_contig101888.1.1 ID=mRNA_L-digitata_M_contig101888.1.1|Name=mRNA_L-digitata_M_contig101888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig101888:64..213- (Laminaria digitata LdigPH10_18mv male)
CTTAAGTGGTGGGCAGGAAAGCAAAGCACGTTTCCGACCGTCGCCAAGTT
GGCCCGCAAGCATCTCGCAATGCAAGCATCGTCCGCCGCATCGGAAAGTC
TGTTCTCAGTAGGAGGAAGCACGATCACGAAGAAGCGCAATCGCTTGATT
back to top