mRNA_L-digitata_M_contig10188.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10188.1.1
Unique NamemRNA_L-digitata_M_contig10188.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10188contigL-digitata_M_contig10188:468..3205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2738
Hectar predicted targeting categoryother localisation
Exons1
Cds size1986
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.9535203-UTR-L-digitata_M_contig10188:467..11121682406623.9535203-UTR-L-digitata_M_contig10188:467..1112Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10188 468..1112 -
1682406623.9706025-UTR-L-digitata_M_contig10188:3098..32051682406623.9706025-UTR-L-digitata_M_contig10188:3098..3205Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10188 3099..3205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.9622817-CDS-L-digitata_M_contig10188:1112..30981682406623.9622817-CDS-L-digitata_M_contig10188:1112..3098Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10188 1113..3098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10188.1.1prot_L-digitata_M_contig10188.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10188 1113..3098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10188.1.1

>prot_L-digitata_M_contig10188.1.1 ID=prot_L-digitata_M_contig10188.1.1|Name=mRNA_L-digitata_M_contig10188.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=662bp
MVRFCQKCRMQATFNFKGSKPAVYCKTHAEDGMVDVHRKRCSHESCTMEP
SYNFEGRKPAAYCKQHAEDGMVGVRSQWCLHDFCTKRSRYNFEGSKPAVY
CKTHAEDGMIDVRNQRCLYDSCTKAAYHNLVGIKRAAYCKQHAEVGMVNV
ISRQCLHDSCTKRSSYNFEGSKPAAYCKQHAEVGMVNVISRRCLHDSCTK
EPSYNFEGSKPAAYCKQHAEVGMVDVISRRCLHDSCRLGPSYNFEGCKPP
AYCKQHAQDGMVDVHSRRCLHGSCRKAPCFYVEGKKWAAYCAQHAEGSKA
NVHGKLRCSHESCNTEPSFNFVGHMTRAYCKQHAQDGMVNIRRQRCLYDS
CTEKPSFNFEGSKPAVCRQHSKDGMVNVRSKRCQRESCLSAARFSFEGSK
AVVYCSRHAEDGMVDVHNRRCLHDSCMKAPSFNFEESQKPVYCKRHAEDG
MVDVRIPRCLHYSCTKRPTYNLEGSKTAAYCKQHSEDGMVDVRHKRCLHG
PCTKAPSFNFEGRSKAYCKLHAEDGMVYIVTKNSSNDDSCTAVGAAGSVP
TDDGPTAGALVKIEILDDPATSVSVDALCAAAGCLKRSRSVTDGKQPTHC
LDHCPLKNGLDVQPAAAVETACSTGRTLSPSSLGLGAHVDDNGGGGKTTA
KRTRHRLYRRP*
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mRNA from alignment at L-digitata_M_contig10188:468..3205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10188.1.1 ID=mRNA_L-digitata_M_contig10188.1.1|Name=mRNA_L-digitata_M_contig10188.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2738bp|location=Sequence derived from alignment at L-digitata_M_contig10188:468..3205- (Laminaria digitata LdigPH10_18mv male)
CAGGTGTGCCTGCGCCATCCCAATAGCAGCAGCTGTGTCCCCCCTCCAGG
GCTGCCGGGGGGGTTTTGGTGGACGCGGTTCGCCGTACTCTACAGCCGGT
GGCGGGAATGGTGCGCTTCTGCCAGAAGTGCCGAATGCAAGCGACCTTCA
ATTTCAAAGGAAGCAAGCCGGCGGTGTACTGCAAGACTCATGCTGAGGAC
GGCATGGTGGATGTCCACAGAAAGCGCTGCTCCCATGAATCCTGCACGAT
GGAGCCGAGCTATAACTTCGAGGGACGCAAGCCGGCAGCGTATTGCAAGC
AACATGCTGAAGACGGCATGGTGGGCGTCCGCAGCCAGTGGTGTTTACAT
GACTTCTGCACAAAGAGATCGAGGTATAATTTTGAGGGAAGCAAGCCGGC
GGTTTACTGCAAGACGCATGCTGAGGACGGCATGATAGACGTTCGCAACC
AGCGGTGTCTATACGACTCCTGCACGAAGGCAGCGTACCATAACTTGGTG
GGAATCAAGCGGGCGGCGTACTGCAAGCAACATGCTGAAGTTGGCATGGT
GAACGTCATCAGCAGGCAGTGTTTACACGACTCTTGCACAAAGAGATCGA
GCTATAACTTCGAGGGAAGCAAGCCGGCGGCGTACTGCAAGCAGCATGCT
GAGGTTGGCATGGTGAACGTCATCAGCAGACGGTGTTTACACGACTCTTG
CACAAAGGAACCGAGCTATAACTTTGAGGGAAGCAAACCGGCGGCGTACT
GCAAGCAACATGCTGAGGTTGGCATGGTGGACGTCATCAGCAGGCGGTGT
TTACATGACTCCTGCAGGCTGGGGCCGAGCTATAATTTCGAAGGATGCAA
GCCGCCGGCGTACTGCAAGCAACATGCTCAGGACGGCATGGTTGACGTCC
ACAGCCGGCGGTGCTTACATGGCTCCTGCAGGAAGGCACCGTGCTTTTAT
GTCGAGGGGAAAAAGTGGGCGGCGTACTGCGCGCAACACGCCGAGGGCTC
CAAGGCGAACGTCCACGGCAAGCTTCGTTGCTCACATGAGTCCTGCAACA
CCGAACCGAGCTTTAACTTTGTGGGGCATATGACGAGGGCGTACTGCAAG
CAACATGCTCAGGACGGCATGGTGAATATCCGGAGGCAACGGTGTTTGTA
TGACTCCTGCACGGAGAAACCCAGTTTTAACTTCGAGGGTAGCAAGCCTG
CGGTGTGCAGGCAACACTCTAAGGACGGCATGGTGAACGTCCGCAGCAAG
CGTTGCCAACGTGAGTCCTGTTTGTCGGCAGCGAGGTTTAGTTTCGAGGG
AAGCAAGGCGGTGGTGTACTGCAGCCGACATGCTGAGGACGGCATGGTGG
ACGTCCACAATCGGCGATGTTTACATGACTCCTGCATGAAGGCACCGAGC
TTCAATTTTGAGGAAAGCCAGAAGCCGGTGTACTGCAAGCGACACGCTGA
GGACGGCATGGTGGACGTCCGGATTCCACGGTGTTTACATTACTCCTGCA
CAAAACGACCGACCTATAACTTGGAGGGAAGCAAGACGGCAGCGTACTGC
AAGCAACATTCCGAGGACGGCATGGTGGACGTCCGCCACAAGCGGTGTTT
GCATGGGCCCTGCACGAAGGCACCGAGCTTTAACTTCGAGGGCAGAAGCA
AGGCCTACTGTAAGCTTCATGCTGAGGATGGAATGGTTTATATTGTCACC
AAGAATTCATCGAATGATGACTCGTGCACGGCTGTGGGCGCTGCTGGGAG
TGTACCAACCGACGATGGGCCCACCGCAGGCGCCCTTGTAAAGATAGAAA
TCTTGGATGATCCAGCGACGAGCGTGAGCGTCGACGCGCTGTGTGCGGCG
GCGGGTTGCTTGAAACGGTCGAGGTCTGTAACCGATGGGAAACAACCTAC
CCATTGCCTCGATCACTGCCCCCTCAAGAACGGACTCGACGTGCAACCTG
CTGCTGCTGTGGAGACGGCTTGCAGTACGGGACGCACTCTCTCTCCATCT
TCCCTTGGGTTAGGGGCACACGTTGACGACAACGGCGGCGGTGGCAAAAC
GACCGCCAAACGAACCCGTCACCGGCTGTACCGCAGACCGTAACTTCGTG
TACAAGTATAGGCCCACGAATATGAAAGAGCCTAATAAAAACAAAAGGCT
CACTTTTTGGAGGACCCTAAGAAAATCGGACTAAGAAAAACGGCTCAGCG
GTGAGCGCTACACTAAATCCCACATAATGGTCTACTATGCTCAACGTCAT
TTAAAGATGGTGTCACAATAATAATCTAAGGCTTGCTGTTGGCGGGCCCA
TGCTGTAGGCGATGGGCATTCAACGCTGGAACGCGTCCAAAAGCTGAGAT
GGAGCTCAGCAGAGAGTACAAATGTATGGAAGGGTCCTGGTTCAGAGGCT
TTCATTGGTCGAGGGTGTCCGGGCTCTGGGTTCGGGTTCGGGTCACAGGG
TATGATTAAACAGCACGCACGAGCTTGTGTTGTGTTTCTTTGTAGAGTGT
CCAGACGTTTCTTGAAACCAGGTCCCTTCGACACACTCGAAATACGACTT
CATCATGGAGCACGCCGATTGTCTTGTTTCAGGCCGTCTTACCGCTACAA
CTTGCACCGATGCGTGGGGCTACGAGTATAGTACCATCCATGCTTGCTGC
GATCTCGAAGCTGGTCCAGATGCAGACAAGACAGGCTATCGCCGTTCATT
TATAGTGAGAATGATAACATTGGAGGAACCGTTTTATG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10188:468..3205-

>mRNA_L-digitata_M_contig10188.1.1 ID=mRNA_L-digitata_M_contig10188.1.1|Name=mRNA_L-digitata_M_contig10188.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1986bp|location=Sequence derived from alignment at L-digitata_M_contig10188:468..3205- (Laminaria digitata LdigPH10_18mv male)
ATGGTGCGCTTCTGCCAGAAGTGCCGAATGCAAGCGACCTTCAATTTCAA
AGGAAGCAAGCCGGCGGTGTACTGCAAGACTCATGCTGAGGACGGCATGG
TGGATGTCCACAGAAAGCGCTGCTCCCATGAATCCTGCACGATGGAGCCG
AGCTATAACTTCGAGGGACGCAAGCCGGCAGCGTATTGCAAGCAACATGC
TGAAGACGGCATGGTGGGCGTCCGCAGCCAGTGGTGTTTACATGACTTCT
GCACAAAGAGATCGAGGTATAATTTTGAGGGAAGCAAGCCGGCGGTTTAC
TGCAAGACGCATGCTGAGGACGGCATGATAGACGTTCGCAACCAGCGGTG
TCTATACGACTCCTGCACGAAGGCAGCGTACCATAACTTGGTGGGAATCA
AGCGGGCGGCGTACTGCAAGCAACATGCTGAAGTTGGCATGGTGAACGTC
ATCAGCAGGCAGTGTTTACACGACTCTTGCACAAAGAGATCGAGCTATAA
CTTCGAGGGAAGCAAGCCGGCGGCGTACTGCAAGCAGCATGCTGAGGTTG
GCATGGTGAACGTCATCAGCAGACGGTGTTTACACGACTCTTGCACAAAG
GAACCGAGCTATAACTTTGAGGGAAGCAAACCGGCGGCGTACTGCAAGCA
ACATGCTGAGGTTGGCATGGTGGACGTCATCAGCAGGCGGTGTTTACATG
ACTCCTGCAGGCTGGGGCCGAGCTATAATTTCGAAGGATGCAAGCCGCCG
GCGTACTGCAAGCAACATGCTCAGGACGGCATGGTTGACGTCCACAGCCG
GCGGTGCTTACATGGCTCCTGCAGGAAGGCACCGTGCTTTTATGTCGAGG
GGAAAAAGTGGGCGGCGTACTGCGCGCAACACGCCGAGGGCTCCAAGGCG
AACGTCCACGGCAAGCTTCGTTGCTCACATGAGTCCTGCAACACCGAACC
GAGCTTTAACTTTGTGGGGCATATGACGAGGGCGTACTGCAAGCAACATG
CTCAGGACGGCATGGTGAATATCCGGAGGCAACGGTGTTTGTATGACTCC
TGCACGGAGAAACCCAGTTTTAACTTCGAGGGTAGCAAGCCTGCGGTGTG
CAGGCAACACTCTAAGGACGGCATGGTGAACGTCCGCAGCAAGCGTTGCC
AACGTGAGTCCTGTTTGTCGGCAGCGAGGTTTAGTTTCGAGGGAAGCAAG
GCGGTGGTGTACTGCAGCCGACATGCTGAGGACGGCATGGTGGACGTCCA
CAATCGGCGATGTTTACATGACTCCTGCATGAAGGCACCGAGCTTCAATT
TTGAGGAAAGCCAGAAGCCGGTGTACTGCAAGCGACACGCTGAGGACGGC
ATGGTGGACGTCCGGATTCCACGGTGTTTACATTACTCCTGCACAAAACG
ACCGACCTATAACTTGGAGGGAAGCAAGACGGCAGCGTACTGCAAGCAAC
ATTCCGAGGACGGCATGGTGGACGTCCGCCACAAGCGGTGTTTGCATGGG
CCCTGCACGAAGGCACCGAGCTTTAACTTCGAGGGCAGAAGCAAGGCCTA
CTGTAAGCTTCATGCTGAGGATGGAATGGTTTATATTGTCACCAAGAATT
CATCGAATGATGACTCGTGCACGGCTGTGGGCGCTGCTGGGAGTGTACCA
ACCGACGATGGGCCCACCGCAGGCGCCCTTGTAAAGATAGAAATCTTGGA
TGATCCAGCGACGAGCGTGAGCGTCGACGCGCTGTGTGCGGCGGCGGGTT
GCTTGAAACGGTCGAGGTCTGTAACCGATGGGAAACAACCTACCCATTGC
CTCGATCACTGCCCCCTCAAGAACGGACTCGACGTGCAACCTGCTGCTGC
TGTGGAGACGGCTTGCAGTACGGGACGCACTCTCTCTCCATCTTCCCTTG
GGTTAGGGGCACACGTTGACGACAACGGCGGCGGTGGCAAAACGACCGCC
AAACGAACCCGTCACCGGCTGTACCGCAGACCGTAA
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