mRNA_L-digitata_M_contig101873.1.2 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101873.1.2
Unique NamemRNA_L-digitata_M_contig101873.1.2
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: A0A6H5JAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.210e-33
Identity = 84/120 (70.00%), Postives = 101/120 (84.17%), Query Frame = 1 
Query:   19 RDQPKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXX----SPSAVVAAAGLPFDSS-ALGRVFRIQPVNDIHRLNVTWQLGEQLR 363
            R++P++KG DVRQ+L +FH++HYRA AMQLVV GGQ+LDELQ +V+ +FSG+A AAXXXXXXXXXXXXXXX      SA VAAAGLPFD + ALGR FR+QPV D+HRL+VTWQLGEQ R
Sbjct:  193 REEPQSKGVDVRQELVDFHAKHYRASAMQLVVQGGQTLDELQALVLSTFSGIAVAAXXXXXXXXXXXXXXXXXLPEESATVAAAGLPFDDAGALGRAFRVQPVKDVHRLHVTWQLGEQHR 312
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: D8LK42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK42_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 9.670e-28
Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 1 
Query:   37 KGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAV-----VAAAGLPFDSS-ALGRVFRIQPVNDIHRLNVTWQLGEQLRYRTT 375
            KG DVRQ+L +FH++HYRA AMQLVV GGQ+LDELQ +V+ SFSG+A+  XXXXXXXXXXXXXXX          VAAAGLPFD + ALGR FR+QPV D+HRL+VTWQLGEQ R   T
Sbjct:   71 KGVDVRQELVDFHAKHYRASAMQLVVQGGQALDELQALVLSSFSGIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAGLPFDDAGALGRAFRVQPVKDVHRLHVTWQLGEQHRRTPT 189
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: UPI0009E3E63F (nardilysin-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3E63F)

HSP 1 Score: 73.6 bits (179), Expect = 1.220e-12
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 1 
Query:   28 PKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAVVAAAGLPFDSSALGRVFRIQPVNDIHRLNVTWQLGEQLRY 366
            PK K  DV + L++F  R Y A  M L V+ G+SLD L++MV ESFS +++ +                P        +PFD S   +V+++ PV D+H+L +TW L  Q +Y
Sbjct:  829 PKEKNIDVNKSLRDFQKRMYSAQYMTLAVISGESLDNLEKMVRESFSKISNNS---------------QPKPNFQDYTIPFDKSKFHKVYKVIPVKDVHQLEITWVLPPQQKY 926
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: A0A812MBM0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812MBM0_9DINO)

HSP 1 Score: 71.2 bits (173), Expect = 7.660e-12
Identity = 39/116 (33.62%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:    1 GSGRARRDQPKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAVVAAAGLPFDSSALGRVFRIQPVNDIHRLNVTWQL 348
            G+ R+ +++P  KG D+ ++L++F   HY+AP ++L V G +SLD+L+ +VV SFS +   +                     A  GLPF+   L  + R++PV D H+L + WQL
Sbjct:  187 GNLRSLKEEPAQKGVDINEELRKFFLEHYQAPQLRLCVYGVESLDDLETLVVTSFSVLPCGSAPQR-----------------AERGLPFEVQCLPLLLRVRPVQDTHKLCIAWQL 285
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: UPI001884D0CC (nardilysin-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884D0CC)

HSP 1 Score: 68.6 bits (166), Expect = 6.690e-11
Identity = 42/108 (38.89%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:   61 LKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAVVAAAGLPFDSSALGRVFRIQPVNDIHRLNVTWQLGEQLR-YRTTEL 381
            L EF   +YRAP M L V   QSLD LQ+ VVE FS V + A                P    A+ G P+D +   R++++ PV D H+L +TWQL   ++ YRT  L
Sbjct:  185 LHEFWRHYYRAPYMTLAVQADQSLDTLQQWVVEIFSEVPATA---------------EPRPSFASHGQPWDPARFHRLYKLLPVKDRHQLTITWQLPSMMKHYRTRPL 277
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: A9VBU7_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VBU7_MONBE)

HSP 1 Score: 65.5 bits (158), Expect = 8.140e-10
Identity = 40/107 (37.38%), Postives = 52/107 (48.60%), Query Frame = 1 
Query:   28 PKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAVVAAAGLPFDSSALGRVFRIQPVNDIHRLNVTWQL 348
            PK KG + R  L+ F   HY A  M LVVLG   LDEL+ MVV+SFS V +                  PSA +     P+D     R + I PVND++ + + W L
Sbjct:  433 PKKKGINTRAALQSFFKTHYSASRMTLVVLGLDELDELEAMVVKSFSPVPTTG---------------QPSAHIRGLPTPWDPKVFHRYYAIPPVNDVNIMGLVWCL 524
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: UPI001C05D88F (insulin-degrading enzyme-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05D88F)

HSP 1 Score: 63.9 bits (154), Expect = 2.770e-9
Identity = 40/113 (35.40%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:   28 PKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAVVAAAGLPFDSSALGRVFRIQPVNDIHRLNVTWQLGEQLRY 366
            P   G DVRQ+L +FHS +Y +  M L VLG +SLDEL  MVV  FS V +                            PF  S L +++++ PV DI +LNVT+ + +  +Y
Sbjct:  225 PSEDGIDVRQELMKFHSAYYSSNLMGLCVLGRESLDELTSMVVRLFSDVENKNVPIPEFPEH-----------------PFQESQLKQLYKVVPVKDIRKLNVTFPIPDIQKY 320
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: T1ISN5_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1ISN5_STRMM)

HSP 1 Score: 62.8 bits (151), Expect = 7.010e-9
Identity = 38/116 (32.76%), Postives = 57/116 (49.14%), Query Frame = 1 
Query:   28 PKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAVVAAAGLPFDSSALGRVFRIQPVNDIHRLNVTWQLGEQLRYRTT 375
            PK+ G +VR++L +FHS+ Y +  M L VLG +SLD+LQ++VV  FSGV +                            PF    L +   + PV DI  LN+T+ + +  +Y  T
Sbjct:  229 PKSNGINVREELLKFHSQWYSSNIMALAVLGKESLDDLQDLVVNLFSGVTNKNIEIPEWTTH-----------------PFGEKELRKTITVVPVKDIRNLNITFPIPDLQQYYKT 327
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: A0A0B7KQI2_BIOOC (Uncharacterized protein n=1 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7KQI2_BIOOC)

HSP 1 Score: 62.8 bits (151), Expect = 7.030e-9
Identity = 40/105 (38.10%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:   28 PKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAVVAAAGLPFDSSALGRVFRIQPVNDIHRLNVTW 342
            P+AKG +VR +  EFHS+HY A  M LVVLG +SLD LQ+   E FSGVA+                           +PF    LG    ++PV D H LN+ +
Sbjct:  212 PEAKGINVRDKFIEFHSQHYSANLMNLVVLGRESLDVLQKWAEEFFSGVANKELPQQRWDTE----------------VPFQKQDLGMQCFVKPVMDYHELNLVF 300
[Close]
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Match: A0A7R9TDI9_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TDI9_9VIRI)

HSP 1 Score: 62.4 bits (150), Expect = 9.600e-9
Identity = 47/131 (35.88%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:    1 GSGRARRDQPKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEMVVESFSGVASAAXXXXXXXXXXXXXXXSPSAVVAAAGLPFDSSALGRVFR------IQPVNDIHRLNVTWQLGEQLR-YRT 372
            G+ ++ RD P + G D+R+QL EF+  HY AP M LVV+G ++LDELQ+MV E F+ V  A                       AA LP D  + G  F       +  V D+ +L+V W L   L+ YR+
Sbjct:  238 GNMKSLRDAPASAGLDMRKQLLEFYDAHYCAPRMTLVVVGMETLDELQDMVGELFARVRPAP--------------------TPAAALPDDFKSQGMPFEPRMQYILPAVRDVMQLHVMWCLPPLLKAYRS 348
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101873.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAW6_9PHAE1.210e-3370.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK42_ECTSI9.670e-2867.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0009E3E63F1.220e-1235.40nardilysin-like n=1 Tax=Orbicella faveolata TaxID=... [more]
A0A812MBM0_9DINO7.660e-1233.62Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
UPI001884D0CC6.690e-1138.89nardilysin-like n=1 Tax=Pollicipes pollicipes TaxI... [more]
A9VBU7_MONBE8.140e-1037.38Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
UPI001C05D88F2.770e-935.40insulin-degrading enzyme-like n=1 Tax=Melanotaenia... [more]
T1ISN5_STRMM7.010e-932.76Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A0B7KQI2_BIOOC7.030e-938.10Uncharacterized protein n=1 Tax=Bionectria ochrole... [more]
A0A7R9TDI9_9VIRI9.600e-935.88Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101873contigL-digitata_M_contig101873:3..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LK42
PFAMsPeptidase_M16,Peptidase_M16_C,Peptidase_M16_M
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K01408,ko:K01411
KEGG Pathwayko05010,map05010
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005777,GO:0005782,GO:0005829,GO:0006508,GO:0006518,GO:0006605,GO:0006625,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0008286,GO:0008340,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009896,GO:0009986,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010604,GO:0010815,GO:0010992,GO:0015031,GO:0015833,GO:0016043,GO:0016787,GO:0017046,GO:0017076,GO:0017144,GO:0019222,GO:0019538,GO:0019725,GO:0022607,GO:0023052,GO:0030163,GO:0030554,GO:0031334,GO:0031907,GO:0031974,GO:0032459,GO:0032461,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0034641,GO:0035639,GO:0036094,GO:0042176,GO:0042221,GO:0042277,GO:0042562,GO:0042579,GO:0042592,GO:0042737,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043171,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043434,GO:0043559,GO:0043574,GO:0043603,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045732,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048518,GO:0048522,GO:0048856,GO:0050435,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0097159,GO:0097242,GO:0097367,GO:0140030,GO:0140035,GO:0140036,GO:0140096,GO:1901142,GO:1901143,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701
Exons2
Evalue1.59e-28
EggNOG OGsCOG1025@1|root,KOG0959@2759|Eukaryota
EC3.4.24.56,3.4.24.61
Descriptionmetalloendopeptidase activity
Cds size387
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.9196563-CDS-L-digitata_M_contig101873:2..1941682406623.9196563-CDS-L-digitata_M_contig101873:2..194Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101873 3..194 +
1682406623.9289784-CDS-L-digitata_M_contig101873:278..4731682406623.9289784-CDS-L-digitata_M_contig101873:278..473Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101873 279..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101873.1.2prot_L-digitata_M_contig101873.1.2Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101873 3..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101873.1.2

>prot_L-digitata_M_contig101873.1.2 ID=prot_L-digitata_M_contig101873.1.2|Name=mRNA_L-digitata_M_contig101873.1.2|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=129bp
GSGRARRDQPKAKGSDVRQQLKEFHSRHYRAPAMQLVVLGGQSLDELQEM
VVESFSGVASAAATMAAAAAAAAAVVGSPSAVVAAAGLPFDSSALGRVFR
IQPVNDIHRLNVTWQLGEQLRYRTTELQ*
back to top

mRNA from alignment at L-digitata_M_contig101873:3..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101873.1.2 ID=mRNA_L-digitata_M_contig101873.1.2|Name=mRNA_L-digitata_M_contig101873.1.2|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=471bp|location=Sequence derived from alignment at L-digitata_M_contig101873:3..473+ (Laminaria digitata LdigPH10_18mv male)
GGGAGCGGGCGGGCTCGGAGGGACCAGCCGAAGGCGAAGGGTAGCGACGT
GCGGCAACAGCTCAAGGAGTTCCACTCGAGGCATTACCGCGCTCCCGCCA
TGCAGCTTGTGGTTTTGGGCGGTCAGAGCCTAGACGAGCTACAGGAGATG
GTTGTGGAAAGCTTCTCAGGAGTTGCATCGGCGGCGGCGACGGTATCGGT
GTCGGTGGAGGGAGAAGGGGGAGGGGGGGGAGGAGGGGGAGTGGCTGCGG
ATAAAGGGGGGTTTCCTAAAGAGGAGATGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGTGGTGGGGTCGCCGTCGGCGGTGGTGGCGGCGGCGGGACTGCC
GTTCGACTCGAGCGCGCTGGGAAGAGTGTTCCGCATTCAGCCGGTGAATG
ACATACACCGCCTCAACGTCACGTGGCAGCTAGGGGAACAGCTCAGGTAC
AGAACTACAGAACTACAGTAA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101873:3..473+

>mRNA_L-digitata_M_contig101873.1.2 ID=mRNA_L-digitata_M_contig101873.1.2|Name=mRNA_L-digitata_M_contig101873.1.2|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=387bp|location=Sequence derived from alignment at L-digitata_M_contig101873:3..473+ (Laminaria digitata LdigPH10_18mv male)
GGGAGCGGGCGGGCTCGGAGGGACCAGCCGAAGGCGAAGGGTAGCGACGT
GCGGCAACAGCTCAAGGAGTTCCACTCGAGGCATTACCGCGCTCCCGCCA
TGCAGCTTGTGGTTTTGGGCGGTCAGAGCCTAGACGAGCTACAGGAGATG
GTTGTGGAAAGCTTCTCAGGAGTTGCATCGGCGGCGGCGACGATGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGTGGTGGGGTCGCCGTCGGCGGTGGTGG
CGGCGGCGGGACTGCCGTTCGACTCGAGCGCGCTGGGAAGAGTGTTCCGC
ATTCAGCCGGTGAATGACATACACCGCCTCAACGTCACGTGGCAGCTAGG
GGAACAGCTCAGGTACAGAACTACAGAACTACAGTAA
back to top