mRNA_L-digitata_M_contig101861.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101861.1.1
Unique NamemRNA_L-digitata_M_contig101861.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101861.1.1 vs. uniprot
Match: A0A6H5JJW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.350e-10
Identity = 31/104 (29.81%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    4 RHTLAWSFLSTALKSQSDRSILHRCTSPREAWDALLAWYGPQTAEAKSDLSRRLNSFKIATGSNPQAEMGRIEDLPPEMRTAGMILDDNMLYTIFLDALPSEYD 315
            R   A+ FLS+AL  + D+++  RC +P++A D L   + P++  A  +L  +  +F +    NP   +  +E L   +   G+ ++ + + ++FL ALP+EYD
Sbjct:   81 RSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYD 184
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BLAST of mRNA_L-digitata_M_contig101861.1.1 vs. uniprot
Match: A0A6H5JPB8_9PHAE (CCHC-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 6.300e-10
Identity = 31/104 (29.81%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    4 RHTLAWSFLSTALKSQSDRSILHRCTSPREAWDALLAWYGPQTAEAKSDLSRRLNSFKIATGSNPQAEMGRIEDLPPEMRTAGMILDDNMLYTIFLDALPSEYD 315
            R   A+ FLS+AL  + D+++  RC +P++A D L   + P++  A  +L  +  +F +    NP   +  +E L   +   G+ ++ + + ++FL ALP+EYD
Sbjct:  203 RSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYD 306
[Close]
BLAST of mRNA_L-digitata_M_contig101861.1.1 vs. uniprot
Match: A0A6H5JXJ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.310e-5
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   13 LAWSFLSTALKSQSDRSILHRCTSPREAWDALLAWYGPQTAEAKSDLSRR 162
            LAW+FLS AL +++D+SIL RCT+PREA   L A Y P+T   +    RR
Sbjct:  144 LAWNFLSAALTTETDKSILRRCTNPREALRQLDAAYLPETXAGRHSRHRR 193
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101861.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JJW6_9PHAE1.350e-1029.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPB8_9PHAE6.300e-1029.81CCHC-type domain-containing protein n=7 Tax=Ectoca... [more]
A0A6H5JXJ0_9PHAE1.310e-552.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101861contigL-digitata_M_contig101861:9..353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size345
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.8633173-CDS-L-digitata_M_contig101861:8..3531682406623.8633173-CDS-L-digitata_M_contig101861:8..353Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101861 9..353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101861.1.1prot_L-digitata_M_contig101861.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101861 9..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101861.1.1

>prot_L-digitata_M_contig101861.1.1 ID=prot_L-digitata_M_contig101861.1.1|Name=mRNA_L-digitata_M_contig101861.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=115bp
QRHTLAWSFLSTALKSQSDRSILHRCTSPREAWDALLAWYGPQTAEAKSD
LSRRLNSFKIATGSNPQAEMGRIEDLPPEMRTAGMILDDNMLYTIFLDAL
PSEYDIEVRNLASRA
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mRNA from alignment at L-digitata_M_contig101861:9..353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101861.1.1 ID=mRNA_L-digitata_M_contig101861.1.1|Name=mRNA_L-digitata_M_contig101861.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=345bp|location=Sequence derived from alignment at L-digitata_M_contig101861:9..353- (Laminaria digitata LdigPH10_18mv male)
CAGAGGCATACACTGGCATGGAGTTTCCTGTCGACGGCTCTCAAGAGCCA
GAGCGACAGGAGTATCTTGCATCGGTGTACTTCACCGAGGGAAGCTTGGG
ACGCTCTCCTCGCGTGGTACGGCCCTCAAACAGCGGAGGCCAAGTCTGAC
CTCTCCCGACGCCTTAATAGCTTTAAGATAGCAACGGGCAGCAACCCGCA
AGCGGAGATGGGTAGGATCGAGGATCTTCCCCCGGAGATGCGTACAGCAG
GTATGATACTGGACGACAACATGCTGTACACCATTTTCCTTGATGCTCTC
CCTAGCGAGTATGATATAGAGGTCAGGAACCTGGCATCTCGCGCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101861:9..353-

>mRNA_L-digitata_M_contig101861.1.1 ID=mRNA_L-digitata_M_contig101861.1.1|Name=mRNA_L-digitata_M_contig101861.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=345bp|location=Sequence derived from alignment at L-digitata_M_contig101861:9..353- (Laminaria digitata LdigPH10_18mv male)
CAGAGGCATACACTGGCATGGAGTTTCCTGTCGACGGCTCTCAAGAGCCA
GAGCGACAGGAGTATCTTGCATCGGTGTACTTCACCGAGGGAAGCTTGGG
ACGCTCTCCTCGCGTGGTACGGCCCTCAAACAGCGGAGGCCAAGTCTGAC
CTCTCCCGACGCCTTAATAGCTTTAAGATAGCAACGGGCAGCAACCCGCA
AGCGGAGATGGGTAGGATCGAGGATCTTCCCCCGGAGATGCGTACAGCAG
GTATGATACTGGACGACAACATGCTGTACACCATTTTCCTTGATGCTCTC
CCTAGCGAGTATGATATAGAGGTCAGGAACCTGGCATCTCGCGCC
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