mRNA_L-digitata_M_contig101851.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A2D7FLN1_9PROT (GTPase Der n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FLN1_9PROT) HSP 1 Score: 298 bits (763), Expect = 4.600e-97 Identity = 155/190 (81.58%), Postives = 167/190 (87.89%), Query Frame = 1
Query: 1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDWDEADRDPEARHAIEDGIAEETD 570
MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREG+A+LGKL F VDTAGLEEAP SEVE MQLQTQRAI+DADA LLVFDARAGI PLDRHFADMMRKSRSPVILVANKCEARS+DAGR+EAYE GLGEP+AIASEHGIGMPDLEDAI LE FD D ++P+AR ++ I +E D
Sbjct: 1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGEALLGKLHFIAVDTAGLEEAPASEVEMGMQLQTQRAIQDADATLLVFDARAGITPLDRHFADMMRKSRSPVILVANKCEARSSDAGRIEAYEFGLGEPIAIASEHGIGMPDLEDAIVAVLEGFDGDSEAQEPDAREYRKNKIGDELD 190
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A520NP56_9PROT (GTPase Der n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NP56_9PROT) HSP 1 Score: 286 bits (731), Expect = 2.450e-92 Identity = 143/168 (85.12%), Postives = 155/168 (92.26%), Query Frame = 1
Query: 1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDW 504
M+PVIAIVGRPNVGKSTLFNRLIGRR+ALVDPTPGVTRDRREGDA LG+LRFT VDTAGLEE +S+VESEMQ+QT RAI +ADA LL+FDARAGI PLDRHFA +MRKSRSPVILVANKCEARSADAGRLEAYELG+GEP+AIASEHG+GMPDLEDAI EALE W
Sbjct: 1 MRPVIAIVGRPNVGKSTLFNRLIGRRAALVDPTPGVTRDRREGDARLGRLRFTAVDTAGLEETSDSDVESEMQVQTLRAIDEADAVLLLFDARAGITPLDRHFAGLMRKSRSPVILVANKCEARSADAGRLEAYELGMGEPIAIASEHGVGMPDLEDAIVEALEKSGW 168
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A2S6Q7L3_9PROT (GTPase Der n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q7L3_9PROT) HSP 1 Score: 277 bits (709), Expect = 5.060e-89 Identity = 143/168 (85.12%), Postives = 151/168 (89.88%), Query Frame = 1
Query: 1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDW 504
M PVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDA LG+LRFT VDTAGLE+AP SEVE+ MQ QTQRAI AD LL+FDARAGI PLDRHFAD+MRKS PVILVANKCEARSA+AGRLEAYELGLGEPVAIASEHGIGMPDLE AIAEA ++ W
Sbjct: 1 MYPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAYLGRLRFTAVDTAGLEDAPASEVETGMQAQTQRAIECADLTLLLFDARAGITPLDRHFADLMRKSPRPVILVANKCEARSAEAGRLEAYELGLGEPVAIASEHGIGMPDLEYAIAEAFKENRW 168
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A2D8PUV3_9PROT (GTPase Der n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUV3_9PROT) HSP 1 Score: 269 bits (687), Expect = 1.040e-85 Identity = 131/168 (77.98%), Postives = 149/168 (88.69%), Query Frame = 1
Query: 1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDW 504
MKP++AIVGRPNVGKSTLFNRL GRRSALVDPTPGVTRDRREGD LG+LRFT VDTAGLEE P+ +E+EMQ QT+RAI +AD ALL+FDAR+G+ P+DRHFAD+MRKS +PVILVANKCEAR+ADAG LEA+ELGLGEP+ IASEHGIGM DLEDA+ EALE W
Sbjct: 1 MKPIVAIVGRPNVGKSTLFNRLTGRRSALVDPTPGVTRDRREGDVYLGRLRFTAVDTAGLEEMPDGGIETEMQAQTRRAIEEADVALLLFDARSGLTPVDRHFADLMRKSHAPVILVANKCEARAADAGILEAWELGLGEPIPIASEHGIGMADLEDAVTEALERTGW 168
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A848Z6R8_9PROT (GTPase Der n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848Z6R8_9PROT) HSP 1 Score: 216 bits (551), Expect = 1.730e-65 Identity = 108/166 (65.06%), Postives = 135/166 (81.33%), Query Frame = 1
Query: 13 IAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAI---AEALEDFD 501
+AIVGRPNVGKSTLFNRL+GR +ALVD PGVTRDRR G+A LG L FTVVDTAGLEE P E++M QTQRA+ +AD A+L+FDARAG+ P+DRHFA +R+ ++P+IL ANKCE R+A+ GRLEA+ELGLGEP+AI++EHG+G+ +L DA+ AEA E D
Sbjct: 5 VAIVGRPNVGKSTLFNRLVGRSAALVDDRPGVTRDRRVGEARLGALTFTVVDTAGLEETPAEGTETQMIHQTQRAVAEADVAVLLFDARAGLTPMDRHFARELRRGKTPLILAANKCEGRAAEPGRLEAFELGLGEPLAISAEHGLGLTELADALRPFAEAAEAAD 170
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: DER_PARL1 (GTPase Der n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=DER_PARL1) HSP 1 Score: 215 bits (548), Expect = 9.120e-65 Identity = 110/188 (58.51%), Postives = 144/188 (76.60%), Query Frame = 1
Query: 13 IAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDWDEADRDPEARHAIEDGIAEETDED 576
+AIVGRPNVGKSTLFNRL+G++ ALVD TPGVTRDRREG+A LG L FT++DTAGLEEA +E+ M++ T+RAI DAD LL+ DARAG+ PLD+ F+ ++RKS +PVIL ANKCE + AGR+EAYELGLG P+ +++EHG G+ DL DA+A+ + + D+A + A+ED +AEE D D
Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRREGEARLGDLSFTIIDTAGLEEAATGTLEARMRIGTERAIADADLCLLLIDARAGVTPLDKSFSQILRKSPTPVILAANKCEGGAGKAGRMEAYELGLGAPLPLSAEHGEGLGDLYDALAQFAKGLEADDAGQ------AVEDALAEEQDAD 186
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A1I4QQS8_9HYPH (GTPase Der n=5 Tax=Pleomorphomonas TaxID=261933 RepID=A0A1I4QQS8_9HYPH) HSP 1 Score: 215 bits (547), Expect = 1.140e-64 Identity = 106/163 (65.03%), Postives = 130/163 (79.75%), Query Frame = 1
Query: 4 KPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALE 492
+P +A+VGRPNVGKSTLFNRL+G++ ALVD TPGVTRDRR G+ LG L F V+DTAGLEEA +E M+ QT+ AIRDADA L ++DARAGI PLD+HF+DM+R+ VILVANK EAR +AG +EAYELGLGE +A+++EHG GM DL DA+ EALE
Sbjct: 4 QPTVALVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRVGNGRLGDLTFQVIDTAGLEEANPDSLEGRMRAQTETAIRDADAILFLYDARAGITPLDKHFSDMIRRMDREVILVANKAEARGVEAGLMEAYELGLGEAIAVSAEHGQGMADLYDALREALE 166
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A2E5L9M3_9PROT (GTPase Der n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L9M3_9PROT) HSP 1 Score: 211 bits (538), Expect = 2.120e-63 Identity = 109/182 (59.89%), Postives = 134/182 (73.63%), Query Frame = 1
Query: 1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDWDEADRDPEARHAIE 546
M P +AIVGRPNVGKSTLFNRLIGRRSALVDP PGVTRDRREG A LG + F V+DTAGL ++P +VE +MQ QT A+ AD L + DA GI PLD+ FA ++RK S VILV NKCE++S+ AG LEAY+LG GEPV +++EHGIG+PDL D + A E F+ P+AR ++E
Sbjct: 1 MLPQVAIVGRPNVGKSTLFNRLIGRRSALVDPAPGVTRDRREGVAKLGSIEFIVIDTAGLADSPIPDVEVQMQKQTLCAVESADVILFLIDALVGITPLDKDFATLLRKINSQVILVGNKCESKSSYAGLLEAYQLGFGEPVVVSAEHGIGIPDLADVVTAAFEMFE-------PQARVSVE 175
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A192IJ27_9HYPH (GTPase Der n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IJ27_9HYPH) HSP 1 Score: 211 bits (536), Expect = 3.570e-63 Identity = 104/163 (63.80%), Postives = 132/163 (80.98%), Query Frame = 1
Query: 1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEAL 489
M IAI+GRPNVGKSTLFNRL+G+R ALVD PGVTRDRREG+ +G LRF V+DTAGLEEA + +E+ M+ QT+ A+ +AD ALL++DARAG+ PLD HFA +R+ +PVI+VANKCE R+ + GRLEAYELGLG+PV +++EHG G+ DL+DAI EAL
Sbjct: 1 MSLTIAILGRPNVGKSTLFNRLVGKRLALVDDLPGVTRDRREGEGRIGTLRFRVIDTAGLEEAFDDSLEARMRQQTEMALAEADVALLMYDARAGLTPLDSHFAGWLREQSTPVIVVANKCEGRAGEPGRLEAYELGLGDPVGVSAEHGEGLVDLKDAI-EAL 162
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: UPI001EFFC813 (ribosome biogenesis GTPase Der n=1 Tax=Pleomorphomonas sp. COJ-58 TaxID=2766474 RepID=UPI001EFFC813) HSP 1 Score: 210 bits (535), Expect = 7.010e-63 Identity = 103/164 (62.80%), Postives = 128/164 (78.05%), Query Frame = 1
Query: 4 KPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALED 495
+P +AIVGRPNVGKSTLFNRL+G++ ALVD TPGVTRDRR GDA LG L F ++DTAGLEEA + M+ QT+ AIRDADA L V DAR G+ PLD+HF++++R+ VIL+ANK E RS G LE+YELGLGEP+A+++EHG GM DL DA+ +ALED
Sbjct: 4 QPTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRTGDARLGDLSFQIIDTAGLEEADPDSLAGRMRAQTETAIRDADAILFVIDARTGLTPLDKHFSEVIRRMGREVILIANKAEGRSGYPGVLESYELGLGEPIALSAEHGEGMADLYDALRDALED 167 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101851.2.1 >prot_L-digitata_M_contig101851.2.1 ID=prot_L-digitata_M_contig101851.2.1|Name=mRNA_L-digitata_M_contig101851.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=192bp MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLback to top mRNA from alignment at L-digitata_M_contig101851:345..920+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101851.2.1 ID=mRNA_L-digitata_M_contig101851.2.1|Name=mRNA_L-digitata_M_contig101851.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=576bp|location=Sequence derived from alignment at L-digitata_M_contig101851:345..920+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101851:345..920+ >mRNA_L-digitata_M_contig101851.2.1 ID=mRNA_L-digitata_M_contig101851.2.1|Name=mRNA_L-digitata_M_contig101851.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=576bp|location=Sequence derived from alignment at L-digitata_M_contig101851:345..920+ (Laminaria digitata LdigPH10_18mv male)back to top |