mRNA_L-digitata_M_contig101851.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101851.2.1
Unique NamemRNA_L-digitata_M_contig101851.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A2D7FLN1_9PROT (GTPase Der n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FLN1_9PROT)

HSP 1 Score: 298 bits (763), Expect = 4.600e-97
Identity = 155/190 (81.58%), Postives = 167/190 (87.89%), Query Frame = 1
Query:    1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDWDEADRDPEARHAIEDGIAEETD 570
            MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREG+A+LGKL F  VDTAGLEEAP SEVE  MQLQTQRAI+DADA LLVFDARAGI PLDRHFADMMRKSRSPVILVANKCEARS+DAGR+EAYE GLGEP+AIASEHGIGMPDLEDAI   LE FD D   ++P+AR   ++ I +E D
Sbjct:    1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGEALLGKLHFIAVDTAGLEEAPASEVEMGMQLQTQRAIQDADATLLVFDARAGITPLDRHFADMMRKSRSPVILVANKCEARSSDAGRIEAYEFGLGEPIAIASEHGIGMPDLEDAIVAVLEGFDGDSEAQEPDAREYRKNKIGDELD 190          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A520NP56_9PROT (GTPase Der n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NP56_9PROT)

HSP 1 Score: 286 bits (731), Expect = 2.450e-92
Identity = 143/168 (85.12%), Postives = 155/168 (92.26%), Query Frame = 1
Query:    1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDW 504
            M+PVIAIVGRPNVGKSTLFNRLIGRR+ALVDPTPGVTRDRREGDA LG+LRFT VDTAGLEE  +S+VESEMQ+QT RAI +ADA LL+FDARAGI PLDRHFA +MRKSRSPVILVANKCEARSADAGRLEAYELG+GEP+AIASEHG+GMPDLEDAI EALE   W
Sbjct:    1 MRPVIAIVGRPNVGKSTLFNRLIGRRAALVDPTPGVTRDRREGDARLGRLRFTAVDTAGLEETSDSDVESEMQVQTLRAIDEADAVLLLFDARAGITPLDRHFAGLMRKSRSPVILVANKCEARSADAGRLEAYELGMGEPIAIASEHGVGMPDLEDAIVEALEKSGW 168          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A2S6Q7L3_9PROT (GTPase Der n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q7L3_9PROT)

HSP 1 Score: 277 bits (709), Expect = 5.060e-89
Identity = 143/168 (85.12%), Postives = 151/168 (89.88%), Query Frame = 1
Query:    1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDW 504
            M PVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDA LG+LRFT VDTAGLE+AP SEVE+ MQ QTQRAI  AD  LL+FDARAGI PLDRHFAD+MRKS  PVILVANKCEARSA+AGRLEAYELGLGEPVAIASEHGIGMPDLE AIAEA ++  W
Sbjct:    1 MYPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAYLGRLRFTAVDTAGLEDAPASEVETGMQAQTQRAIECADLTLLLFDARAGITPLDRHFADLMRKSPRPVILVANKCEARSAEAGRLEAYELGLGEPVAIASEHGIGMPDLEYAIAEAFKENRW 168          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A2D8PUV3_9PROT (GTPase Der n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUV3_9PROT)

HSP 1 Score: 269 bits (687), Expect = 1.040e-85
Identity = 131/168 (77.98%), Postives = 149/168 (88.69%), Query Frame = 1
Query:    1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDW 504
            MKP++AIVGRPNVGKSTLFNRL GRRSALVDPTPGVTRDRREGD  LG+LRFT VDTAGLEE P+  +E+EMQ QT+RAI +AD ALL+FDAR+G+ P+DRHFAD+MRKS +PVILVANKCEAR+ADAG LEA+ELGLGEP+ IASEHGIGM DLEDA+ EALE   W
Sbjct:    1 MKPIVAIVGRPNVGKSTLFNRLTGRRSALVDPTPGVTRDRREGDVYLGRLRFTAVDTAGLEEMPDGGIETEMQAQTRRAIEEADVALLLFDARSGLTPVDRHFADLMRKSHAPVILVANKCEARAADAGILEAWELGLGEPIPIASEHGIGMADLEDAVTEALERTGW 168          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A848Z6R8_9PROT (GTPase Der n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848Z6R8_9PROT)

HSP 1 Score: 216 bits (551), Expect = 1.730e-65
Identity = 108/166 (65.06%), Postives = 135/166 (81.33%), Query Frame = 1
Query:   13 IAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAI---AEALEDFD 501
            +AIVGRPNVGKSTLFNRL+GR +ALVD  PGVTRDRR G+A LG L FTVVDTAGLEE P    E++M  QTQRA+ +AD A+L+FDARAG+ P+DRHFA  +R+ ++P+IL ANKCE R+A+ GRLEA+ELGLGEP+AI++EHG+G+ +L DA+   AEA E  D
Sbjct:    5 VAIVGRPNVGKSTLFNRLVGRSAALVDDRPGVTRDRRVGEARLGALTFTVVDTAGLEETPAEGTETQMIHQTQRAVAEADVAVLLFDARAGLTPMDRHFARELRRGKTPLILAANKCEGRAAEPGRLEAFELGLGEPLAISAEHGLGLTELADALRPFAEAAEAAD 170          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: DER_PARL1 (GTPase Der n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=DER_PARL1)

HSP 1 Score: 215 bits (548), Expect = 9.120e-65
Identity = 110/188 (58.51%), Postives = 144/188 (76.60%), Query Frame = 1
Query:   13 IAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDWDEADRDPEARHAIEDGIAEETDED 576
            +AIVGRPNVGKSTLFNRL+G++ ALVD TPGVTRDRREG+A LG L FT++DTAGLEEA    +E+ M++ T+RAI DAD  LL+ DARAG+ PLD+ F+ ++RKS +PVIL ANKCE  +  AGR+EAYELGLG P+ +++EHG G+ DL DA+A+  +  + D+A +      A+ED +AEE D D
Sbjct:    5 VAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRREGEARLGDLSFTIIDTAGLEEAATGTLEARMRIGTERAIADADLCLLLIDARAGVTPLDKSFSQILRKSPTPVILAANKCEGGAGKAGRMEAYELGLGAPLPLSAEHGEGLGDLYDALAQFAKGLEADDAGQ------AVEDALAEEQDAD 186          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A1I4QQS8_9HYPH (GTPase Der n=5 Tax=Pleomorphomonas TaxID=261933 RepID=A0A1I4QQS8_9HYPH)

HSP 1 Score: 215 bits (547), Expect = 1.140e-64
Identity = 106/163 (65.03%), Postives = 130/163 (79.75%), Query Frame = 1
Query:    4 KPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALE 492
            +P +A+VGRPNVGKSTLFNRL+G++ ALVD TPGVTRDRR G+  LG L F V+DTAGLEEA    +E  M+ QT+ AIRDADA L ++DARAGI PLD+HF+DM+R+    VILVANK EAR  +AG +EAYELGLGE +A+++EHG GM DL DA+ EALE
Sbjct:    4 QPTVALVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRVGNGRLGDLTFQVIDTAGLEEANPDSLEGRMRAQTETAIRDADAILFLYDARAGITPLDKHFSDMIRRMDREVILVANKAEARGVEAGLMEAYELGLGEAIAVSAEHGQGMADLYDALREALE 166          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A2E5L9M3_9PROT (GTPase Der n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L9M3_9PROT)

HSP 1 Score: 211 bits (538), Expect = 2.120e-63
Identity = 109/182 (59.89%), Postives = 134/182 (73.63%), Query Frame = 1
Query:    1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALEDFDWDEADRDPEARHAIE 546
            M P +AIVGRPNVGKSTLFNRLIGRRSALVDP PGVTRDRREG A LG + F V+DTAGL ++P  +VE +MQ QT  A+  AD  L + DA  GI PLD+ FA ++RK  S VILV NKCE++S+ AG LEAY+LG GEPV +++EHGIG+PDL D +  A E F+       P+AR ++E
Sbjct:    1 MLPQVAIVGRPNVGKSTLFNRLIGRRSALVDPAPGVTRDRREGVAKLGSIEFIVIDTAGLADSPIPDVEVQMQKQTLCAVESADVILFLIDALVGITPLDKDFATLLRKINSQVILVGNKCESKSSYAGLLEAYQLGFGEPVVVSAEHGIGIPDLADVVTAAFEMFE-------PQARVSVE 175          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: A0A192IJ27_9HYPH (GTPase Der n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IJ27_9HYPH)

HSP 1 Score: 211 bits (536), Expect = 3.570e-63
Identity = 104/163 (63.80%), Postives = 132/163 (80.98%), Query Frame = 1
Query:    1 MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEAL 489
            M   IAI+GRPNVGKSTLFNRL+G+R ALVD  PGVTRDRREG+  +G LRF V+DTAGLEEA +  +E+ M+ QT+ A+ +AD ALL++DARAG+ PLD HFA  +R+  +PVI+VANKCE R+ + GRLEAYELGLG+PV +++EHG G+ DL+DAI EAL
Sbjct:    1 MSLTIAILGRPNVGKSTLFNRLVGKRLALVDDLPGVTRDRREGEGRIGTLRFRVIDTAGLEEAFDDSLEARMRQQTEMALAEADVALLMYDARAGLTPLDSHFAGWLREQSTPVIVVANKCEGRAGEPGRLEAYELGLGDPVGVSAEHGEGLVDLKDAI-EAL 162          
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Match: UPI001EFFC813 (ribosome biogenesis GTPase Der n=1 Tax=Pleomorphomonas sp. COJ-58 TaxID=2766474 RepID=UPI001EFFC813)

HSP 1 Score: 210 bits (535), Expect = 7.010e-63
Identity = 103/164 (62.80%), Postives = 128/164 (78.05%), Query Frame = 1
Query:    4 KPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKLRFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLDRHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGIGMPDLEDAIAEALED 495
            +P +AIVGRPNVGKSTLFNRL+G++ ALVD TPGVTRDRR GDA LG L F ++DTAGLEEA    +   M+ QT+ AIRDADA L V DAR G+ PLD+HF++++R+    VIL+ANK E RS   G LE+YELGLGEP+A+++EHG GM DL DA+ +ALED
Sbjct:    4 QPTVAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRTGDARLGDLSFQIIDTAGLEEADPDSLAGRMRAQTETAIRDADAILFVIDARTGLTPLDKHFSEVIRRMGREVILIANKAEGRSGYPGVLESYELGLGEPIALSAEHGEGMADLYDALRDALED 167          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101851.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FLN1_9PROT4.600e-9781.58GTPase Der n=1 Tax=Rhodospirillaceae bacterium Tax... [more]
A0A520NP56_9PROT2.450e-9285.12GTPase Der n=1 Tax=Rhodospirillaceae bacterium Tax... [more]
A0A2S6Q7L3_9PROT5.060e-8985.12GTPase Der n=1 Tax=Alphaproteobacteria bacterium M... [more]
A0A2D8PUV3_9PROT1.040e-8577.98GTPase Der n=1 Tax=Rhodospirillaceae bacterium Tax... [more]
A0A848Z6R8_9PROT1.730e-6565.06GTPase Der n=1 Tax=Inquilinus sp. TaxID=1932117 Re... [more]
DER_PARL19.120e-6558.51GTPase Der n=1 Tax=Parvibaculum lavamentivorans (s... [more]
A0A1I4QQS8_9HYPH1.140e-6465.03GTPase Der n=5 Tax=Pleomorphomonas TaxID=261933 Re... [more]
A0A2E5L9M3_9PROT2.120e-6359.89GTPase Der n=1 Tax=Rhodospirillaceae bacterium Tax... [more]
A0A192IJ27_9HYPH3.570e-6363.80GTPase Der n=2 Tax=Alphaproteobacteria TaxID=28211... [more]
UPI001EFFC8137.010e-6362.80ribosome biogenesis GTPase Der n=1 Tax=Pleomorphom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101851contigL-digitata_M_contig101851:345..920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog402881.Plav_3492
Preferred nameder
PFAMsKH_dom-like,MMR_HSR1
Model size576
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03977
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.49e-65
EggNOG OGsCOG1160@1|root,COG1160@2|Bacteria,1MU9S@1224|Proteobacteria,2TT38@28211|Alphaproteobacteria,1JNBI@119043|Rhodobiaceae
DescriptionGTPase that plays an essential role in the late steps of ribosome biogenesis
Cds size576
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.799898-CDS-L-digitata_M_contig101851:344..9201682406623.799898-CDS-L-digitata_M_contig101851:344..920Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101851 345..920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101851.2.1prot_L-digitata_M_contig101851.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101851 345..920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101851.2.1

>prot_L-digitata_M_contig101851.2.1 ID=prot_L-digitata_M_contig101851.2.1|Name=mRNA_L-digitata_M_contig101851.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=192bp
MKPVIAIVGRPNVGKSTLFNRLIGRRSALVDPTPGVTRDRREGDAMLGKL
RFTVVDTAGLEEAPESEVESEMQLQTQRAIRDADAALLVFDARAGIVPLD
RHFADMMRKSRSPVILVANKCEARSADAGRLEAYELGLGEPVAIASEHGI
GMPDLEDAIAEALEDFDWDEADRDPEARHAIEDGIAEETDED
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mRNA from alignment at L-digitata_M_contig101851:345..920+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101851.2.1 ID=mRNA_L-digitata_M_contig101851.2.1|Name=mRNA_L-digitata_M_contig101851.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=576bp|location=Sequence derived from alignment at L-digitata_M_contig101851:345..920+ (Laminaria digitata LdigPH10_18mv male)
ATGAAACCCGTTATCGCTATTGTCGGCCGCCCAAATGTGGGTAAATCGAC GCTTTTCAACCGTCTGATCGGACGTCGTTCGGCGCTTGTCGATCCGACCC CGGGGGTCACGCGCGACCGCCGCGAGGGCGATGCGATGCTCGGGAAACTG CGCTTTACCGTGGTTGATACCGCCGGGCTTGAAGAAGCGCCCGAATCCGA GGTCGAATCGGAAATGCAGCTTCAGACACAACGCGCAATCCGGGATGCCG ATGCGGCGTTACTGGTATTCGATGCGCGTGCCGGCATTGTGCCGCTGGAC CGGCATTTTGCCGATATGATGCGAAAATCCCGTTCGCCGGTCATTCTGGT TGCGAACAAGTGCGAGGCAAGGTCCGCGGATGCCGGCCGGCTGGAAGCCT ATGAGCTGGGCCTCGGCGAGCCCGTGGCCATCGCGTCCGAGCACGGTATC GGCATGCCCGACCTCGAAGATGCGATCGCGGAAGCGCTGGAAGACTTTGA CTGGGACGAAGCAGATCGCGACCCCGAGGCTCGTCACGCTATCGAAGACG GGATCGCGGAAGAAACCGACGAAGAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101851:345..920+

>mRNA_L-digitata_M_contig101851.2.1 ID=mRNA_L-digitata_M_contig101851.2.1|Name=mRNA_L-digitata_M_contig101851.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=576bp|location=Sequence derived from alignment at L-digitata_M_contig101851:345..920+ (Laminaria digitata LdigPH10_18mv male)
ATGAAACCCGTTATCGCTATTGTCGGCCGCCCAAATGTGGGTAAATCGAC
GCTTTTCAACCGTCTGATCGGACGTCGTTCGGCGCTTGTCGATCCGACCC
CGGGGGTCACGCGCGACCGCCGCGAGGGCGATGCGATGCTCGGGAAACTG
CGCTTTACCGTGGTTGATACCGCCGGGCTTGAAGAAGCGCCCGAATCCGA
GGTCGAATCGGAAATGCAGCTTCAGACACAACGCGCAATCCGGGATGCCG
ATGCGGCGTTACTGGTATTCGATGCGCGTGCCGGCATTGTGCCGCTGGAC
CGGCATTTTGCCGATATGATGCGAAAATCCCGTTCGCCGGTCATTCTGGT
TGCGAACAAGTGCGAGGCAAGGTCCGCGGATGCCGGCCGGCTGGAAGCCT
ATGAGCTGGGCCTCGGCGAGCCCGTGGCCATCGCGTCCGAGCACGGTATC
GGCATGCCCGACCTCGAAGATGCGATCGCGGAAGCGCTGGAAGACTTTGA
CTGGGACGAAGCAGATCGCGACCCCGAGGCTCGTCACGCTATCGAAGACG
GGATCGCGGAAGAAACCGACGAAGAC
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