mRNA_L-digitata_M_contig101851.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101851.1.1
Unique NamemRNA_L-digitata_M_contig101851.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A2D7FLS0_9PROT (Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FLS0_9PROT)

HSP 1 Score: 177 bits (450), Expect = 4.960e-52
Identity = 77/109 (70.64%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            VAGDF+Y+VT + EVICLTRRGG VRW+ QL  FED ED TGPILW+GPV+AG+RLLV+NN++++WSLSPYTG +LG +++  PVLIPP++A ETLYVLTD+AELIAFR
Sbjct:  318 VAGDFIYVVTHNAEVICLTRRGGHVRWMAQLAGFEDAEDQTGPILWSGPVVAGNRLLVANNIDQVWSLSPYTGNILGRIDISSPVLIPPIVASETLYVLTDEAELIAFR 426
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BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A2D8PUE2_9PROT (Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUE2_9PROT)

HSP 1 Score: 177 bits (448), Expect = 1.030e-51
Identity = 79/109 (72.48%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            VAGDF+Y++TR+ EVICLTRRGGRVRWI QLPR+ED ED   PILW GPVLAGDRLL+  + EE+WSLSPY+GKVLG LE+PGP+L+PPV+A ETLY+LT++A+LIA R
Sbjct:  320 VAGDFIYVLTRNAEVICLTRRGGRVRWISQLPRYEDEEDQEDPILWAGPVLAGDRLLIGGSHEEMWSLSPYSGKVLGRLEMPGPILLPPVVARETLYILTEEADLIALR 428
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BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A2S6Q7D4_9PROT (Outer membrane protein assembly factor BamB n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q7D4_9PROT)

HSP 1 Score: 174 bits (441), Expect = 1.550e-50
Identity = 77/109 (70.64%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            VAGDF+Y++TRD E++CLTRRGGRVRWI QLPRFED ++   PILW+GPVLAGDRLL+ N+ EEIWSLSPY G+VLG +++ GPVLIPP++A ET+YVLTD+A+LIA+R
Sbjct:  335 VAGDFIYVLTRDAELVCLTRRGGRVRWISQLPRFEDEKEQEDPILWSGPVLAGDRLLIGNSREEIWSLSPYHGEVLGRIDILGPVLIPPIVARETVYVLTDEADLIAYR 443
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BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A520NP98_9PROT (Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NP98_9PROT)

HSP 1 Score: 173 bits (438), Expect = 3.140e-50
Identity = 77/109 (70.64%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            VAGDF+Y++TR+ E++CLTRRGGRVRWI QLPRFED ED   P+LW+GPVLAGDRLLV +  +EIWS+SPYTGK+LG +EV GPVLI PV+A ET+YVLTD+A+L A+R
Sbjct:  320 VAGDFIYVMTRNAELVCLTRRGGRVRWIAQLPRFEDEEDQEDPVLWSGPVLAGDRLLVGSTQKEIWSVSPYTGKILGRIEVSGPVLISPVVARETVYVLTDEADLAAYR 428
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BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A6N7FG69_9PROT (PQQ-binding-like beta-propeller repeat protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FG69_9PROT)

HSP 1 Score: 154 bits (388), Expect = 9.140e-43
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            V GDFVY++   GE++CL RR G +RW+ Q+  FED +D   PI+WTGPVLAGDRLLV ++  E+WS+SPYTGK+LG +E PGPV IPP +A +T+YVLTD AELIAFR
Sbjct:  328 VVGDFVYLMNNAGELVCLARRNGGIRWVRQMQVFEDEKDREDPIVWTGPVLAGDRLLVGSSHGELWSVSPYTGKLLGRIETPGPVFIPPAVANDTVYVLTDKAELIAFR 436
[Close]
BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A2E6GL96_9PROT (Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GL96_9PROT)

HSP 1 Score: 152 bits (385), Expect = 2.570e-42
Identity = 66/109 (60.55%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            VAG+FVY+++  GE++CL+RR G VRW+ QL R+ED +D   PI WTGPVLAGDRLL+  + EE+WS+SPYTGK+LG +++ GPV IPPVIA +T+++L+DDA LIA R
Sbjct:  329 VAGEFVYVLSAFGELLCLSRRTGGVRWVTQLQRYEDEKDQEDPIFWTGPVLAGDRLLIGGSHEEVWSISPYTGKILGRVKLSGPVFIPPVIANDTVFILSDDARLIALR 437
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BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A2E5BS34_9HYPH (Pyrrolo-quinoline quinone n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BS34_9HYPH)

HSP 1 Score: 148 bits (374), Expect = 1.200e-40
Identity = 66/109 (60.55%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            VAG F+++VT D EV+ L++R GR+RWI QLPRFED ED  GPI W+GPVLAGDRL++++++ E  SLSPYTG+VLG +E+P  V +PP++A ETLYVLTD A+L+A +
Sbjct:  336 VAGGFIFLVTTDAEVVALSQRDGRIRWIQQLPRFEDEEDRDGPITWSGPVLAGDRLILASSLGEAVSLSPYTGEVLGRVELPDGVYLPPIVANETLYVLTDSADLVALK 444
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BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A2E7QV46_9PROT (Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QV46_9PROT)

HSP 1 Score: 146 bits (368), Expect = 8.060e-40
Identity = 60/109 (55.05%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            VAGDF+Y+++  GE++CL+RR G VRW+ QL R+ED +   GP+ WTGPVLAGDRLL+  + +E+WS+SPY G +LG ++V GPV IPP++A +T+Y+L+D+A L+A R
Sbjct:  329 VAGDFIYVLSGLGELLCLSRRTGGVRWVSQLQRYEDEKTQEGPVYWTGPVLAGDRLLIGGSHKEVWSISPYNGSILGRIKVSGPVFIPPIVANDTIYILSDNARLLALR 437
[Close]
BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A2E7DI48_9PROT (Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7DI48_9PROT)

HSP 1 Score: 143 bits (361), Expect = 4.550e-39
Identity = 64/109 (58.72%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            VAG F+YIV+ +GEVICL RR GR+RW+ +LPRFE  ED  G I + GP+LAGDRLLV++++ E+ ++SPY+GK LG ++V GP+ +PP+IAG T+Y+LTD A LIA+R
Sbjct:  293 VAGKFIYIVSTNGEVICLIRRDGRIRWLTRLPRFESPEDREGLISYAGPLLAGDRLLVASSLGELHAISPYSGKPLGVVDVGGPIFVPPIIAGRTIYLLTDGALLIAYR 401
[Close]
BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Match: A0A2S6UGS4_9PROT (Outer membrane protein assembly factor BamB n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin1 TaxID=2013074 RepID=A0A2S6UGS4_9PROT)

HSP 1 Score: 142 bits (358), Expect = 2.460e-38
Identity = 57/109 (52.29%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    1 VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPVLAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLTDDAELIAFR 327
            +AG+F+Y++T + +++CLTRRGGR+RW++ LPRFED +D   PI W+GPVLAGDRLL+S +  E WS+SPY+G++LG  ++ G V +PPV+A  T++ L +D +L+A R
Sbjct:  332 IAGEFIYVLTNESQLVCLTRRGGRIRWVLDLPRFEDEDDKDAPIKWSGPVLAGDRLLISGSHGEAWSISPYSGEILGREDLSGSVYLPPVVADGTVFFLIEDGDLVAMR 440
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101851.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FLS0_9PROT4.960e-5270.64Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillacea... [more]
A0A2D8PUE2_9PROT1.030e-5172.48Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillacea... [more]
A0A2S6Q7D4_9PROT1.550e-5070.64Outer membrane protein assembly factor BamB n=1 Ta... [more]
A0A520NP98_9PROT3.140e-5070.64Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillacea... [more]
A0A6N7FG69_9PROT9.140e-4362.39PQQ-binding-like beta-propeller repeat protein n=1... [more]
A0A2E6GL96_9PROT2.570e-4260.55Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillacea... [more]
A0A2E5BS34_9HYPH1.200e-4060.55Pyrrolo-quinoline quinone n=1 Tax=Rhodobiaceae bac... [more]
A0A2E7QV46_9PROT8.060e-4055.05Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillacea... [more]
A0A2E7DI48_9PROT4.550e-3958.72Pyrrolo-quinoline quinone n=1 Tax=Rhodospirillacea... [more]
A0A2S6UGS4_9PROT2.460e-3852.29Outer membrane protein assembly factor BamB n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101851contigL-digitata_M_contig101851:2..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1282876.BAOK01000001_gene2424
Preferred namebamB
PFAMsPQQ_2,PQQ_3
Model size330
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K17713
KEGG TC1.B.33.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.53e-38
EggNOG OGsCOG1520@1|root,COG1520@2|Bacteria,1MXIJ@1224|Proteobacteria,2TUAD@28211|Alphaproteobacteria,4BQ2V@82117|unclassified Alphaproteobacteria
DescriptionPQQ-like domain
Cds size330
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.7687776-CDS-L-digitata_M_contig101851:1..3311682406623.7687776-CDS-L-digitata_M_contig101851:1..331Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101851 2..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101851.1.1prot_L-digitata_M_contig101851.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101851 2..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101851.1.1

>prot_L-digitata_M_contig101851.1.1 ID=prot_L-digitata_M_contig101851.1.1|Name=mRNA_L-digitata_M_contig101851.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=110bp
VAGDFVYIVTRDGEVICLTRRGGRVRWIVQLPRFEDLEDLTGPILWTGPV
LAGDRLLVSNNVEEIWSLSPYTGKVLGFLEVPGPVLIPPVIAGETLYVLT
DDAELIAFR*
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mRNA from alignment at L-digitata_M_contig101851:2..331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101851.1.1 ID=mRNA_L-digitata_M_contig101851.1.1|Name=mRNA_L-digitata_M_contig101851.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=330bp|location=Sequence derived from alignment at L-digitata_M_contig101851:2..331+ (Laminaria digitata LdigPH10_18mv male)
GTCGCGGGCGACTTTGTCTATATCGTGACACGCGATGGAGAGGTTATTTG
TCTTACCCGGCGCGGTGGTCGTGTTCGCTGGATCGTGCAGCTGCCACGGT
TCGAAGACCTTGAAGACCTGACCGGGCCGATACTCTGGACCGGACCGGTG
CTTGCAGGCGATCGCCTCCTTGTCTCCAACAATGTCGAGGAAATCTGGTC
CTTGTCGCCGTATACCGGGAAGGTATTGGGCTTTCTCGAGGTGCCCGGCC
CGGTATTGATCCCGCCGGTCATTGCCGGCGAAACGCTTTACGTCCTTACG
GACGATGCCGAGCTGATCGCATTTCGTTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101851:2..331+

>mRNA_L-digitata_M_contig101851.1.1 ID=mRNA_L-digitata_M_contig101851.1.1|Name=mRNA_L-digitata_M_contig101851.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=330bp|location=Sequence derived from alignment at L-digitata_M_contig101851:2..331+ (Laminaria digitata LdigPH10_18mv male)
GTCGCGGGCGACTTTGTCTATATCGTGACACGCGATGGAGAGGTTATTTG
TCTTACCCGGCGCGGTGGTCGTGTTCGCTGGATCGTGCAGCTGCCACGGT
TCGAAGACCTTGAAGACCTGACCGGGCCGATACTCTGGACCGGACCGGTG
CTTGCAGGCGATCGCCTCCTTGTCTCCAACAATGTCGAGGAAATCTGGTC
CTTGTCGCCGTATACCGGGAAGGTATTGGGCTTTCTCGAGGTGCCCGGCC
CGGTATTGATCCCGCCGGTCATTGCCGGCGAAACGCTTTACGTCCTTACG
GACGATGCCGAGCTGATCGCATTTCGTTGA
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