mRNA_L-digitata_M_contig101850.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101850.1.1
Unique NamemRNA_L-digitata_M_contig101850.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101850.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101850contigL-digitata_M_contig101850:309..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.701409-UTR-L-digitata_M_contig101850:308..3191682406623.701409-UTR-L-digitata_M_contig101850:308..319Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101850 309..319 -
1682406623.7340627-UTR-L-digitata_M_contig101850:555..5891682406623.7340627-UTR-L-digitata_M_contig101850:555..589Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101850 556..589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.7140489-CDS-L-digitata_M_contig101850:319..5071682406623.7140489-CDS-L-digitata_M_contig101850:319..507Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101850 320..507 -
1682406623.7241485-CDS-L-digitata_M_contig101850:533..5551682406623.7241485-CDS-L-digitata_M_contig101850:533..555Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101850 534..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101850.1.1prot_L-digitata_M_contig101850.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101850 320..555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101850.1.1

>prot_L-digitata_M_contig101850.1.1 ID=prot_L-digitata_M_contig101850.1.1|Name=mRNA_L-digitata_M_contig101850.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=70bp
MFGVGHIIHVVSHLFLARSTGCHNCPSKTRAGCSPGGMRVIRARRSLRFS
AVRRSSSTLELALQLPVST*
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mRNA from alignment at L-digitata_M_contig101850:309..589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101850.1.1 ID=mRNA_L-digitata_M_contig101850.1.1|Name=mRNA_L-digitata_M_contig101850.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=281bp|location=Sequence derived from alignment at L-digitata_M_contig101850:309..589- (Laminaria digitata LdigPH10_18mv male)
TTCCAGTGCCGATGATGAGAGCGGGTCGGTGGGGATGTTCGGTGTTGGAC
ACATTAGTCCNNNNNNNNNNTGCACATATTAGTTCATGTAGTGAGTCATC
TGTTCCTCGCACGATCAACAGGGTGTCATAATTGCCCGAGTAAAACGCGC
GCGGGTTGTTCACCTGGAGGGATGCGTGTTATCCGGGCACGAAGAAGTCT
AAGGTTTTCGGCAGTAAGACGTTCGAGCAGCACACTTGAGTTGGCGCTAC
AGCTCCCTGTTTCCACCTAACACACTACCGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101850:309..589-

>mRNA_L-digitata_M_contig101850.1.1 ID=mRNA_L-digitata_M_contig101850.1.1|Name=mRNA_L-digitata_M_contig101850.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=210bp|location=Sequence derived from alignment at L-digitata_M_contig101850:309..589- (Laminaria digitata LdigPH10_18mv male)
ATGTTCGGTGTTGGACACATTATTCATGTAGTGAGTCATCTGTTCCTCGC
ACGATCAACAGGGTGTCATAATTGCCCGAGTAAAACGCGCGCGGGTTGTT
CACCTGGAGGGATGCGTGTTATCCGGGCACGAAGAAGTCTAAGGTTTTCG
GCAGTAAGACGTTCGAGCAGCACACTTGAGTTGGCGCTACAGCTCCCTGT
TTCCACCTAA
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