mRNA_L-digitata_M_contig10184.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10184.3.1
Unique NamemRNA_L-digitata_M_contig10184.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10184.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10184contigL-digitata_M_contig10184:6299..8231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size990
Hectar predicted targeting categoryother localisation
Exons2
Cds size987
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.3972158-CDS-L-digitata_M_contig10184:6300..70031682406623.3972158-CDS-L-digitata_M_contig10184:6300..7003Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10184 6301..7003 -
1682406623.405288-CDS-L-digitata_M_contig10184:7947..82311682406623.405288-CDS-L-digitata_M_contig10184:7947..8231Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10184 7948..8231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10184.3.1prot_L-digitata_M_contig10184.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10184 6301..8231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10184.3.1

>prot_L-digitata_M_contig10184.3.1 ID=prot_L-digitata_M_contig10184.3.1|Name=mRNA_L-digitata_M_contig10184.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=329bp
NRCSSSTRLKELVLGCYHPQMEEKSRGHRHRDGDDAVSVGAEFIGGIDPA
TASASAASSSSAAVAGGLDYRALIRQQRHEIAELKRAALEDSPRNGGRPL
SWHDDGDGDGVTAAGAAPALASSPPNTARRPRYPPRHASFEGNGNGDGDG
DGNGKGNGDGNGNGSSSGNGNGSGSGSGNGNGSGNGSCNGHDNGHGNDHG
DGHGNGHGIGSSGYGFTRLPARSDRDPLPRSRRQQQQQQPLNQSAGANIP
AHSYEGSPAGPPPARDRFSTASSHGEGPRHNPNHAEAAAAATGDHHSAAT
AREGKEGGREFSRLVDMTGGGDGGGNGVA
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mRNA from alignment at L-digitata_M_contig10184:6299..8231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10184.3.1 ID=mRNA_L-digitata_M_contig10184.3.1|Name=mRNA_L-digitata_M_contig10184.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1933bp|location=Sequence derived from alignment at L-digitata_M_contig10184:6299..8231- (Laminaria digitata LdigPH10_18mv male)
AATCGTTGCTCATCATCGACGCGACTGAAAGAGCTTGTTCTTGGTTGCTA
TCACCCCCAAATGGAGGAAAAGTCGAGAGGGCACCGCCATCGTGATGGCG
ATGATGCAGTGAGTGTTGGCGCGGAGTTTATCGGTGGTATCGACCCCGCA
ACTGCTTCTGCTTCTGCTGCTTCTTCTTCTTCTGCTGCTGTCGCCGGCGG
TTTGGATTATCGCGCGTTGATTCGGCAACAGCGGCACGAGATCGCGGAGC
TGAAGAGGGCTGCCCTTGAAGACTCGCCAAGAAAGTGAGCAAAAACGTCC
CGATGTTCGCTTTGCTGGAACTGATAGCATGGTGTAGCCGTTCGAATGCT
TGAAGCTCTGTCTTCTTGGTCAGCCAGCAGCACCGAGGGTGCGCGCGTGC
GCGTCCCCAACTGCGAGAACATTTAAAAATACAAAATACCTGGTACTAAA
ATACGTTGTGCCAGGATTTTTTCCTTCGGGGACAGACCATCGTGCGTCCC
TGTTTTCCCATCAGGAGGTACCGCCGTAGCAGCAGCAGCAGCAGCAGCAA
CACAATAGCGACAACGAGCAGCGTCCAACTGCCGTTTCCACTAGTCTGTG
CAACAGCAGTACCGGTAGTTCACGGGGGACAACGCAAGACAAAAAAAAAA
CACAGATTGTTTGTCGGGTCAAAATCACGTCACGCCTCTCAATTCTCACA
CAATCAAAATCAAGCGCCTCTTGCTGGCGGGGCGGCGCGTTGCAAAAGGT
TGGTGTTGTTTTGCAAAGCCCAACGCAGCGGTGCGATGCACCGGTCGTTG
CTTGCTCTGGTGGCGATTTCCCGAGGCACTCGCGGCAACCAACATCAATT
ATTCGCGAATTTGTCGTACTCGTAGTTTATTTCACAGTCGCCGCCGCCTT
CACCGCGGACGTATTCCTTACCAGGTACCAGGGTGCCAGGTACAAGTAAT
GCTGTACCAGGTACCTGGTACACGGTATTTCACATTTCCGTCCGCTCACA
TCATTAAACCCACGCCGCGCGGGTTTAGAAGGCCGATGATGCAAGCACGG
CGGTATCATAGCCCTTCGATTATAAAAAATGCCCGTCCGGTACCCATCTC
CAATGCTATGATATGGTACGTAACACGTACTTCGTATATAGTCTAATAGG
CTACACGTCCGGGTCGTGGGTTTAATCGATGCCGCCCCTTCCCGGTGCCA
CCGTTGTCCCCGCGCGCGTGTGCATCAGCGGTGGGAGACCCTTGAGTTGG
CACGATGATGGAGATGGAGATGGAGTCACCGCCGCCGGCGCCGCCCCTGC
GCTTGCCTCTTCTCCACCTAACACGGCGCGGAGGCCCCGATACCCGCCTA
GGCACGCCTCCTTCGAAGGCAACGGTAACGGTGACGGTGACGGTGACGGA
AACGGTAAAGGTAACGGTGACGGGAACGGGAACGGTAGCAGCAGCGGTAA
CGGCAACGGTAGCGGTAGCGGTAGCGGTAACGGGAACGGTAGCGGGAACG
GTAGCTGTAACGGCCACGATAACGGCCACGGTAATGACCACGGTGACGGC
CACGGTAACGGCCACGGTATCGGTAGCAGCGGCTATGGCTTCACGCGACT
ACCCGCACGTTCCGACCGCGACCCTCTACCGCGATCGCGGCGGCAGCAGC
AGCAGCAGCAGCCGCTCAACCAAAGCGCGGGTGCGAACATTCCCGCCCAC
AGCTACGAAGGGTCGCCGGCCGGCCCGCCTCCCGCGCGGGACCGCTTCTC
TACCGCTAGCTCCCACGGCGAGGGTCCGCGGCACAACCCGAACCATGCAG
AAGCTGCCGCCGCCGCAACCGGAGACCATCACTCTGCTGCAACCGCGCGG
GAAGGCAAGGAAGGTGGCCGAGAGTTTTCGAGGCTGGTCGATATGACAGG
CGGTGGTGATGGTGGTGGTAATGGTGTTGCTGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10184:6299..8231-

>mRNA_L-digitata_M_contig10184.3.1 ID=mRNA_L-digitata_M_contig10184.3.1|Name=mRNA_L-digitata_M_contig10184.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=987bp|location=Sequence derived from alignment at L-digitata_M_contig10184:6299..8231- (Laminaria digitata LdigPH10_18mv male)
AATCGTTGCTCATCATCGACGCGACTGAAAGAGCTTGTTCTTGGTTGCTA
TCACCCCCAAATGGAGGAAAAGTCGAGAGGGCACCGCCATCGTGATGGCG
ATGATGCAGTGAGTGTTGGCGCGGAGTTTATCGGTGGTATCGACCCCGCA
ACTGCTTCTGCTTCTGCTGCTTCTTCTTCTTCTGCTGCTGTCGCCGGCGG
TTTGGATTATCGCGCGTTGATTCGGCAACAGCGGCACGAGATCGCGGAGC
TGAAGAGGGCTGCCCTTGAAGACTCGCCAAGAAACGGTGGGAGACCCTTG
AGTTGGCACGATGATGGAGATGGAGATGGAGTCACCGCCGCCGGCGCCGC
CCCTGCGCTTGCCTCTTCTCCACCTAACACGGCGCGGAGGCCCCGATACC
CGCCTAGGCACGCCTCCTTCGAAGGCAACGGTAACGGTGACGGTGACGGT
GACGGAAACGGTAAAGGTAACGGTGACGGGAACGGGAACGGTAGCAGCAG
CGGTAACGGCAACGGTAGCGGTAGCGGTAGCGGTAACGGGAACGGTAGCG
GGAACGGTAGCTGTAACGGCCACGATAACGGCCACGGTAATGACCACGGT
GACGGCCACGGTAACGGCCACGGTATCGGTAGCAGCGGCTATGGCTTCAC
GCGACTACCCGCACGTTCCGACCGCGACCCTCTACCGCGATCGCGGCGGC
AGCAGCAGCAGCAGCAGCCGCTCAACCAAAGCGCGGGTGCGAACATTCCC
GCCCACAGCTACGAAGGGTCGCCGGCCGGCCCGCCTCCCGCGCGGGACCG
CTTCTCTACCGCTAGCTCCCACGGCGAGGGTCCGCGGCACAACCCGAACC
ATGCAGAAGCTGCCGCCGCCGCAACCGGAGACCATCACTCTGCTGCAACC
GCGCGGGAAGGCAAGGAAGGTGGCCGAGAGTTTTCGAGGCTGGTCGATAT
GACAGGCGGTGGTGATGGTGGTGGTAATGGTGTTGCT
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