mRNA_L-digitata_M_contig101834.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101834.1.1
Unique NamemRNA_L-digitata_M_contig101834.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101834.1.1 vs. uniprot
Match: A0A2E0TDC7_9DELT (Uncharacterized protein n=2 Tax=Myxococcales TaxID=29 RepID=A0A2E0TDC7_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 7.060e-18
Identity = 94/303 (31.02%), Postives = 137/303 (45.21%), Query Frame = 1 
Query:    7 WRV-LLNSFNVLYSPSANNLDTALDIGFSRVRDVRWRFAARASYAPEAVSLSGRATYRFGQAVTPDSLNQWVGMVLGG---EYLRPQFAGTLDSAFALSGSVYY--GYDDRRTAWAPEAGTGLRASLSASRVFGQPAEDSGVSQQAINLTLRGLRSWRLHARHQLSLRASFGAYLYGTPRVQLRYALGGRRNVRGYVVDDEVGRIR--GIASAEWVHSWVPDMNLNAAWLVWVTGLDGALFADVAVI--GDDLRDLGRTAPRADVGYGVRIYIDYFGVRPGVMAIDVALPLVDT-QGRWSVGP 882
            WR  +L  FN     +       LD    R  D+    A R    P   S  G   Y  G     D+ N+ +G +  G   + LR  FAG+ +       ++ +  GY   R    P  G+ L  S+ A  VF     D G     ++  LRG  +  +  R  L         L G P    R  LGGR  +RGY   + VGR R  G+  A +  +   D+N+N   L W+  +  ALFA    +   DD RD+   AP A+VG G+R++ +Y GV+PGV+A+D+A+PLV T + R ++ P
Sbjct:  601 WRPPILQGFNFAVGATEGAFIGLLDFALRRRWDLENTVALRLDTGPR--STGGLLRYVRGVGRKRDTNNR-IGFLSTGLELDRLRSGFAGSDEGVGGWRTALVFVGGYSTLRYFLDPREGSSLVGSVRAGLVF----RDDGSRSWTLSPALRGNVTVPVGLRTALVFVGGASVAL-GQPLASERPGLGGRFLLRGYQNAEVVGRGRVYGVVEARFTPTAFADLNVNVVHLAWIREIQLALFAGGGAVFDADDGRDV---APGAEVGGGLRVHFEYGGVQPGVLALDLAVPLVRTAEARRTLSP 892
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BLAST of mRNA_L-digitata_M_contig101834.1.1 vs. uniprot
Match: A0A356TB46_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A356TB46_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 7.320e-7
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:  547 LGGRRNVRGYVVDDEVGRIRGIASAEWVHSWVPDMNLNAAWLVWVTGLDGALFADVAVIGD--DLRDLGRTAPRADVGYGVRIYIDYFGVRPGVMAIDVALPLV 852
            +GG   +R Y   + +GR      AE   S   D+++N   ++WV  +  A F  VA   +  D RD+   A  ADVG GVR++ +Y GV+PGV+++DV +PL+
Sbjct:  253 IGGASRLRRYESGEMLGRGALYLVAEHRWSAFRDLSMNLGHVIWVREIQLAFFGGVAAAFETSDGRDV---AGAADVGAGVRVHYEYGGVQPGVISLDVGVPLI 353
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BLAST of mRNA_L-digitata_M_contig101834.1.1 vs. uniprot
Match: A0A661NIY7_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NIY7_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 1.990e-6
Identity = 60/208 (28.85%), Postives = 97/208 (46.63%), Query Frame = 1 
Query:  244 LRPQFAGTLDSAFALSGSVYYGYDDRRTAWAPEAGTGLRASLSASRVFGQPAED------SGVSQQAINLTLRGLRSWRLHARHQLSLRASFGAYLYGTPRVQLRYALGGRRNVRGYVVDDEVGRIRGIASAEWVHSWVPDMNLNAAWLVWVTGLDGALFADVAVIGDDLRDLGRTAPRADVGYGVRIYIDYFGVRPGVMAIDVALPL 849
            +R  F G     + LS     G+D R     P  G+   +++ + RV G   +D      +G+  +A ++   GLR+  L       +  +FG  L G  +      LGGR  +RG+   + VGR +    AE   + + D+  N   L W+  +  A++    +  D + D G     A+VG G+R +  Y GV+PGVM+IDV +PL
Sbjct:  677 VRDDFVGAGVGGYRLSLIGSAGFDTRTYFVDPREGS---SAVFSGRVGGVVRDDDEFGVTAGLGFRASHMITMGLRNAMLLVG---GVGWTFGDALSGELQ-----QLGGRFLLRGFGTQELVGRGKAYLVAEHRITALSDLRWNLVHLAWLREIQLAVWTGGGMTFDSIPD-GGLRLAAEVGGGLRFHYTYGGVQPGVMSIDVGVPL 872
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101834.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E0TDC7_9DELT7.060e-1831.02Uncharacterized protein n=2 Tax=Myxococcales TaxID... [more]
A0A356TB46_9DELT7.320e-736.54Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A661NIY7_9DELT1.990e-628.85Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101834contigL-digitata_M_contig101834:27..911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size885
Hectar predicted targeting categorymitochondrion
Exons1
Cds size885
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.3395836-CDS-L-digitata_M_contig101834:26..9111682406623.3395836-CDS-L-digitata_M_contig101834:26..911Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101834 27..911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101834.1.1prot_L-digitata_M_contig101834.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101834 27..911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101834.1.1

>prot_L-digitata_M_contig101834.1.1 ID=prot_L-digitata_M_contig101834.1.1|Name=mRNA_L-digitata_M_contig101834.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=295bp
ARWRVLLNSFNVLYSPSANNLDTALDIGFSRVRDVRWRFAARASYAPEAV
SLSGRATYRFGQAVTPDSLNQWVGMVLGGEYLRPQFAGTLDSAFALSGSV
YYGYDDRRTAWAPEAGTGLRASLSASRVFGQPAEDSGVSQQAINLTLRGL
RSWRLHARHQLSLRASFGAYLYGTPRVQLRYALGGRRNVRGYVVDDEVGR
IRGIASAEWVHSWVPDMNLNAAWLVWVTGLDGALFADVAVIGDDLRDLGR
TAPRADVGYGVRIYIDYFGVRPGVMAIDVALPLVDTQGRWSVGPP
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mRNA from alignment at L-digitata_M_contig101834:27..911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101834.1.1 ID=mRNA_L-digitata_M_contig101834.1.1|Name=mRNA_L-digitata_M_contig101834.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=885bp|location=Sequence derived from alignment at L-digitata_M_contig101834:27..911+ (Laminaria digitata LdigPH10_18mv male)
GCACGCTGGCGGGTGCTGCTCAATAGCTTCAACGTGCTGTACTCGCCCTC
GGCCAATAACCTCGATACCGCGCTCGATATTGGCTTTTCTCGGGTCCGGG
ACGTGCGTTGGCGGTTCGCAGCGAGGGCGAGCTACGCGCCTGAGGCGGTG
AGCCTCAGCGGGCGGGCGACCTATCGTTTTGGGCAGGCGGTGACGCCCGA
CAGCCTGAACCAGTGGGTAGGCATGGTGCTGGGCGGGGAGTACCTCAGGC
CCCAGTTCGCGGGCACCCTGGACAGCGCCTTCGCCCTGTCTGGCTCGGTC
TACTATGGCTACGACGACCGCCGAACCGCGTGGGCGCCCGAGGCGGGCAC
CGGGCTGCGCGCGAGCCTCAGTGCGTCCCGGGTCTTCGGGCAGCCGGCCG
AGGACAGCGGGGTGAGCCAGCAGGCGATCAACCTGACGCTGAGGGGGCTT
CGCTCCTGGCGCTTGCACGCCCGTCACCAGCTGTCGCTGCGGGCCAGCTT
CGGCGCGTACTTGTATGGCACCCCGAGGGTCCAGCTGCGCTACGCCTTGG
GCGGACGCCGCAACGTGCGCGGCTATGTCGTGGACGATGAGGTGGGTCGC
ATCCGCGGAATCGCGAGCGCGGAGTGGGTGCACAGCTGGGTGCCGGACAT
GAACCTGAACGCGGCCTGGCTCGTCTGGGTCACGGGTTTGGATGGAGCGC
TCTTTGCCGACGTGGCCGTCATCGGCGATGACCTCCGCGATCTCGGTCGC
ACCGCGCCCCGCGCAGACGTCGGCTATGGGGTTCGCATCTACATCGACTA
CTTTGGGGTTCGCCCCGGCGTGATGGCGATCGATGTGGCGCTGCCTCTGG
TCGATACCCAGGGTCGCTGGAGCGTGGGGCCGCCT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101834:27..911+

>mRNA_L-digitata_M_contig101834.1.1 ID=mRNA_L-digitata_M_contig101834.1.1|Name=mRNA_L-digitata_M_contig101834.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=885bp|location=Sequence derived from alignment at L-digitata_M_contig101834:27..911+ (Laminaria digitata LdigPH10_18mv male)
GCACGCTGGCGGGTGCTGCTCAATAGCTTCAACGTGCTGTACTCGCCCTC
GGCCAATAACCTCGATACCGCGCTCGATATTGGCTTTTCTCGGGTCCGGG
ACGTGCGTTGGCGGTTCGCAGCGAGGGCGAGCTACGCGCCTGAGGCGGTG
AGCCTCAGCGGGCGGGCGACCTATCGTTTTGGGCAGGCGGTGACGCCCGA
CAGCCTGAACCAGTGGGTAGGCATGGTGCTGGGCGGGGAGTACCTCAGGC
CCCAGTTCGCGGGCACCCTGGACAGCGCCTTCGCCCTGTCTGGCTCGGTC
TACTATGGCTACGACGACCGCCGAACCGCGTGGGCGCCCGAGGCGGGCAC
CGGGCTGCGCGCGAGCCTCAGTGCGTCCCGGGTCTTCGGGCAGCCGGCCG
AGGACAGCGGGGTGAGCCAGCAGGCGATCAACCTGACGCTGAGGGGGCTT
CGCTCCTGGCGCTTGCACGCCCGTCACCAGCTGTCGCTGCGGGCCAGCTT
CGGCGCGTACTTGTATGGCACCCCGAGGGTCCAGCTGCGCTACGCCTTGG
GCGGACGCCGCAACGTGCGCGGCTATGTCGTGGACGATGAGGTGGGTCGC
ATCCGCGGAATCGCGAGCGCGGAGTGGGTGCACAGCTGGGTGCCGGACAT
GAACCTGAACGCGGCCTGGCTCGTCTGGGTCACGGGTTTGGATGGAGCGC
TCTTTGCCGACGTGGCCGTCATCGGCGATGACCTCCGCGATCTCGGTCGC
ACCGCGCCCCGCGCAGACGTCGGCTATGGGGTTCGCATCTACATCGACTA
CTTTGGGGTTCGCCCCGGCGTGATGGCGATCGATGTGGCGCTGCCTCTGG
TCGATACCCAGGGTCGCTGGAGCGTGGGGCCGCCT
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