mRNA_L-digitata_M_contig101832.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E7PN48_9PROT (Cupin n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7PN48_9PROT) HSP 1 Score: 174 bits (441), Expect = 2.190e-51 Identity = 97/179 (54.19%), Postives = 109/179 (60.89%), Query Frame = 1
Query: 1 MDTNNISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMG--------------------------------------------------------DTAEGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHPDITDAAADSGLARDEAGDLKVTA 369
MD NN+SV+EME FVARF+ L GS+EAFVDSRLPGH+RFK+N VGMG T EG++SITLEPFDSISVP GVYRGFR+VGEGKGTLLTIIGGPDAGRVDWHP IT AA++SGL R GDLKV+A
Sbjct: 1 MDINNLSVTEMEAFVARFSELTGSDEAFVDSRLPGHKRFKINLVGMGVVEATDKPELRPNIPLPAKGFNLGMIQAENGNGAALHAHETEEVFMPLIGPWEVYWATDEGDRSITLEPFDSISVPMGVYRGFRYVGEGKGTLLTIIGGPDAGRVDWHPTITQAASNSGLERTADGDLKVSA 179
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E8XT82_9PROT (Cupin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XT82_9PROT) HSP 1 Score: 167 bits (422), Expect = 1.620e-48 Identity = 93/179 (51.96%), Postives = 103/179 (57.54%), Query Frame = 1
Query: 1 MDTNNISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMGD--------------------------------------------------------TAEGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHPDITDAAADSGLARDEAGDLKVTA 369
MD NN+S EME FVARF L GS EAFVDSRLPGH+RFK+N VGMG T EG K I LEPFDSIS+P GV+RGFR+ GEG GTLLTIIGGPDAGRVDWH +T+AAA+SGL+RDE GDLKVTA
Sbjct: 1 MDINNLSEVEMEAFVARFENLQGSHEAFVDSRLPGHKRFKINLVGMGVVEATDKPELQPNIPLPAKGFNLGMIQAENGNGAALHAHETEEVFMPLIGPWAVYWMTDEGTKEIVLEPFDSISIPMGVHRGFRYEGEGTGTLLTIIGGPDAGRVDWHSSVTEAAAESGLSRDEVGDLKVTA 179
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A848WA83_9PROT (SDR family oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WA83_9PROT) HSP 1 Score: 161 bits (408), Expect = 1.950e-45 Identity = 75/121 (61.98%), Postives = 95/121 (78.51%), Query Frame = 3
Query: 378 TRRKALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
T R+ALVTG S G+G EIAL A+NG+D+A R+ LD+VM++PE+A VNA+P+ +ELTS DSI G + A+EGLGGLDV++NNA ALIKP +DVTW+DWD +V NLKGAYFLS RL
Sbjct: 9 TPRRALVTGASRGIGREIALTLARNGFDLAVTAREIDRLDDVMSQPEMAGVNAIPIAVELTSHDSINQGFDTAVEGLGGLDVLINNAGRALIKPAIDVTWEDWDSVVDANLKGAYFLSGRL 129
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E7PNC0_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PNC0_9PROT) HSP 1 Score: 157 bits (396), Expect = 9.270e-44 Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 3
Query: 390 ALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
ALVTG STGLGLE AL A+ GYD+A ADR+ +LD VMA P+LA V A+PV LEL SE SI+DG+ +AIEGLGGLD +VNNA L+ VDVTWDDWD ++ +NLKGAYF +ARL
Sbjct: 4 ALVTGASTGLGLETALTLARAGYDLALADREIGLLDNVMAHPDLAGVTAMPVVLELQSEASIRDGMASAIEGLGGLDTLVNNAGRTLLAQAVDVTWDDWDSVIGINLKGAYFAAARL 120
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E8XT34_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XT34_9PROT) HSP 1 Score: 157 bits (396), Expect = 1.040e-43 Identity = 76/118 (64.41%), Postives = 95/118 (80.51%), Query Frame = 3
Query: 387 KALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
KALVTG STGLG EIAL A+ GYD+A AD+D A+LD V+ +LA+V AVPV L+L SE I+DG +A+EGLGGLD+VVNNA + L++ VDVTWD+WD L++VNLKGAYFL+ARL
Sbjct: 7 KALVTGASTGLGREIALTLARAGYDVALADQDVALLDPVLGHDDLADVTAVPVALQLLSEAGIRDGFASAVEGLGGLDLVVNNAGVPLLQQAVDVTWDEWDALMNVNLKGAYFLAARL 124
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E3XBL3_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XBL3_9PROT) HSP 1 Score: 154 bits (388), Expect = 1.930e-42 Identity = 70/121 (57.85%), Postives = 95/121 (78.51%), Query Frame = 3
Query: 378 TRRKALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
T R+AL+TG S GLGLEIA+ A++GYD+A AD+ + LD+V+ +PEL+ + A+PV +EL SEDSI+ G NAAIEGLGGLDV+VNNA L+K ++VTW++WD ++ VNLKG YFL+ L
Sbjct: 9 TNRRALITGASKGLGLEIAMTLARDGYDLALADKKLSRLDKVLEKPELSEIKAIPVEIELLSEDSIRSGFNAAIEGLGGLDVLVNNAGTTLLKAAINVTWEEWDAVMDVNLKGQYFLACLL 129
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E7I4Y3_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I4Y3_9PROT) HSP 1 Score: 151 bits (381), Expect = 1.820e-41 Identity = 72/124 (58.06%), Postives = 94/124 (75.81%), Query Frame = 3
Query: 369 VSETRRKALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
+S R+ ALVTG STGLG E AL A+ GY++A ADR+ +LDEVMA P+LA + A+PV EL SE SI+DG+ AAI+GLGGLD +VNNA L+ V+VTW++WD ++ +NLKGAYF +ARL
Sbjct: 1 MSNGRKSALVTGASTGLGRETALTLARAGYNVALADREIGLLDEVMAHPDLAGITAMPVEFELLSEASIRDGMAAAIDGLGGLDTLVNNAGRTLLAQAVNVTWEEWDSVMGINLKGAYFAAARL 124
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2S6QJV4_9PROT (Glucose 1-dehydrogenase 2 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QJV4_9PROT) HSP 1 Score: 151 bits (381), Expect = 2.140e-41 Identity = 70/127 (55.12%), Postives = 95/127 (74.80%), Query Frame = 3
Query: 360 GDRVSETRRKALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
G E R+AL+TG +TGLG EIAL A++GYD+ ADRD LD++M P+L NVN +PV++EL SE+SI +G + I GLGGLDV+VNNAA LIK +DVTWD+WD ++++NLKG++FL+ L
Sbjct: 3 GSSSKELTRRALITGAATGLGREIALTLARDGYDVGLADRDKPSLDKLMNHPDLENVNTIPVSIELLSEESINEGFSDVINGLGGLDVLVNNAAKPLIKQAIDVTWDEWDDVLNINLKGSFFLACLL 129
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: UPI001BA5E0D8 (hypothetical protein n=2 Tax=Roseomonas hellenica TaxID=2687306 RepID=UPI001BA5E0D8) HSP 1 Score: 141 bits (355), Expect = 2.480e-38 Identity = 79/175 (45.14%), Postives = 95/175 (54.29%), Query Frame = 1
Query: 1 MDTNNISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMGD--------------------------------------------------------TAEGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHPDITDAAADSGLARDEAGDL 357
+D N+S++EME+FVARFATL GSEEAFVDS LPG RRFK+N VGMG T EGEK I L+PFD I VP GVYRGFR+VGEG+GTLLT+IGGPDAG+V W P + + AA G++R G +
Sbjct: 6 IDPENVSIAEMERFVARFATLRGSEEAFVDSNLPGARRFKINLVGMGVVEREDLPDLKPNIPLPAHGFNLGMIQAEHGNGASLHAHTTEEVFMPLIGPWAVFWMTKEGEKEIVLQPFDCIHVPTGVYRGFRYVGEGRGTLLTLIGGPDAGKVTWEPGVLEKAAAIGVSRGADGQV 180
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: UPI001BA7B65A (hypothetical protein n=1 Tax=Roseomonas arctica TaxID=1509237 RepID=UPI001BA7B65A) HSP 1 Score: 138 bits (347), Expect = 3.700e-37 Identity = 78/171 (45.61%), Postives = 93/171 (54.39%), Query Frame = 1
Query: 13 NISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMGD--------------------------------------------------------TAEGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHPDITDAAADSGLARDEAGDL 357
N+SV+EME+FVARFATL GSEEAFVDS LPG RRFK+N VGMG T GEK I L+PFD I VP GVYRGFR+VGEG+GTLLT+IGGPDAG+V W P + + AA G++R+ G +
Sbjct: 9 NMSVAEMERFVARFATLRGSEEAFVDSHLPGSRRFKINLVGMGVVEREDLPDLKPNIPLGAHGFNLGMIQAEHGNGASLHAHTTEEVFMPLVGPWAVVWMTEAGEKEIILQPFDCIHVPTGVYRGFRYVGEGRGTLLTLIGGPDAGKVAWEPSVLEKAAAMGVSRNATGQV 179 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101832.1.1 >prot_L-digitata_M_contig101832.1.1 ID=prot_L-digitata_M_contig101832.1.1|Name=mRNA_L-digitata_M_contig101832.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp MDTNNISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMGDTAback to top mRNA from alignment at L-digitata_M_contig101832:153..892+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101832.1.1 ID=mRNA_L-digitata_M_contig101832.1.1|Name=mRNA_L-digitata_M_contig101832.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=740bp|location=Sequence derived from alignment at L-digitata_M_contig101832:153..892+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101832:153..892+ >mRNA_L-digitata_M_contig101832.1.1 ID=mRNA_L-digitata_M_contig101832.1.1|Name=mRNA_L-digitata_M_contig101832.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig101832:153..892+ (Laminaria digitata LdigPH10_18mv male)back to top |