mRNA_L-digitata_M_contig101832.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101832.1.1
Unique NamemRNA_L-digitata_M_contig101832.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E7PN48_9PROT (Cupin n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7PN48_9PROT)

HSP 1 Score: 174 bits (441), Expect = 2.190e-51
Identity = 97/179 (54.19%), Postives = 109/179 (60.89%), Query Frame = 1
Query:    1 MDTNNISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMG--------------------------------------------------------DTAEGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHPDITDAAADSGLARDEAGDLKVTA 369
            MD NN+SV+EME FVARF+ L GS+EAFVDSRLPGH+RFK+N VGMG                                                         T EG++SITLEPFDSISVP GVYRGFR+VGEGKGTLLTIIGGPDAGRVDWHP IT AA++SGL R   GDLKV+A
Sbjct:    1 MDINNLSVTEMEAFVARFSELTGSDEAFVDSRLPGHKRFKINLVGMGVVEATDKPELRPNIPLPAKGFNLGMIQAENGNGAALHAHETEEVFMPLIGPWEVYWATDEGDRSITLEPFDSISVPMGVYRGFRYVGEGKGTLLTIIGGPDAGRVDWHPTITQAASNSGLERTADGDLKVSA 179          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E8XT82_9PROT (Cupin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XT82_9PROT)

HSP 1 Score: 167 bits (422), Expect = 1.620e-48
Identity = 93/179 (51.96%), Postives = 103/179 (57.54%), Query Frame = 1
Query:    1 MDTNNISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMGD--------------------------------------------------------TAEGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHPDITDAAADSGLARDEAGDLKVTA 369
            MD NN+S  EME FVARF  L GS EAFVDSRLPGH+RFK+N VGMG                                                         T EG K I LEPFDSIS+P GV+RGFR+ GEG GTLLTIIGGPDAGRVDWH  +T+AAA+SGL+RDE GDLKVTA
Sbjct:    1 MDINNLSEVEMEAFVARFENLQGSHEAFVDSRLPGHKRFKINLVGMGVVEATDKPELQPNIPLPAKGFNLGMIQAENGNGAALHAHETEEVFMPLIGPWAVYWMTDEGTKEIVLEPFDSISIPMGVHRGFRYEGEGTGTLLTIIGGPDAGRVDWHSSVTEAAAESGLSRDEVGDLKVTA 179          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A848WA83_9PROT (SDR family oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WA83_9PROT)

HSP 1 Score: 161 bits (408), Expect = 1.950e-45
Identity = 75/121 (61.98%), Postives = 95/121 (78.51%), Query Frame = 3
Query:  378 TRRKALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
            T R+ALVTG S G+G EIAL  A+NG+D+A   R+   LD+VM++PE+A VNA+P+ +ELTS DSI  G + A+EGLGGLDV++NNA  ALIKP +DVTW+DWD +V  NLKGAYFLS RL
Sbjct:    9 TPRRALVTGASRGIGREIALTLARNGFDLAVTAREIDRLDDVMSQPEMAGVNAIPIAVELTSHDSINQGFDTAVEGLGGLDVLINNAGRALIKPAIDVTWEDWDSVVDANLKGAYFLSGRL 129          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E7PNC0_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PNC0_9PROT)

HSP 1 Score: 157 bits (396), Expect = 9.270e-44
Identity = 76/117 (64.96%), Postives = 91/117 (77.78%), Query Frame = 3
Query:  390 ALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
            ALVTG STGLGLE AL  A+ GYD+A ADR+  +LD VMA P+LA V A+PV LEL SE SI+DG+ +AIEGLGGLD +VNNA   L+   VDVTWDDWD ++ +NLKGAYF +ARL
Sbjct:    4 ALVTGASTGLGLETALTLARAGYDLALADREIGLLDNVMAHPDLAGVTAMPVVLELQSEASIRDGMASAIEGLGGLDTLVNNAGRTLLAQAVDVTWDDWDSVIGINLKGAYFAAARL 120          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E8XT34_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XT34_9PROT)

HSP 1 Score: 157 bits (396), Expect = 1.040e-43
Identity = 76/118 (64.41%), Postives = 95/118 (80.51%), Query Frame = 3
Query:  387 KALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
            KALVTG STGLG EIAL  A+ GYD+A AD+D A+LD V+   +LA+V AVPV L+L SE  I+DG  +A+EGLGGLD+VVNNA + L++  VDVTWD+WD L++VNLKGAYFL+ARL
Sbjct:    7 KALVTGASTGLGREIALTLARAGYDVALADQDVALLDPVLGHDDLADVTAVPVALQLLSEAGIRDGFASAVEGLGGLDLVVNNAGVPLLQQAVDVTWDEWDALMNVNLKGAYFLAARL 124          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E3XBL3_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XBL3_9PROT)

HSP 1 Score: 154 bits (388), Expect = 1.930e-42
Identity = 70/121 (57.85%), Postives = 95/121 (78.51%), Query Frame = 3
Query:  378 TRRKALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
            T R+AL+TG S GLGLEIA+  A++GYD+A AD+  + LD+V+ +PEL+ + A+PV +EL SEDSI+ G NAAIEGLGGLDV+VNNA   L+K  ++VTW++WD ++ VNLKG YFL+  L
Sbjct:    9 TNRRALITGASKGLGLEIAMTLARDGYDLALADKKLSRLDKVLEKPELSEIKAIPVEIELLSEDSIRSGFNAAIEGLGGLDVLVNNAGTTLLKAAINVTWEEWDAVMDVNLKGQYFLACLL 129          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2E7I4Y3_9PROT (2-deoxy-D-gluconate 3-dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I4Y3_9PROT)

HSP 1 Score: 151 bits (381), Expect = 1.820e-41
Identity = 72/124 (58.06%), Postives = 94/124 (75.81%), Query Frame = 3
Query:  369 VSETRRKALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
            +S  R+ ALVTG STGLG E AL  A+ GY++A ADR+  +LDEVMA P+LA + A+PV  EL SE SI+DG+ AAI+GLGGLD +VNNA   L+   V+VTW++WD ++ +NLKGAYF +ARL
Sbjct:    1 MSNGRKSALVTGASTGLGRETALTLARAGYNVALADREIGLLDEVMAHPDLAGITAMPVEFELLSEASIRDGMAAAIDGLGGLDTLVNNAGRTLLAQAVNVTWEEWDSVMGINLKGAYFAAARL 124          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: A0A2S6QJV4_9PROT (Glucose 1-dehydrogenase 2 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QJV4_9PROT)

HSP 1 Score: 151 bits (381), Expect = 2.140e-41
Identity = 70/127 (55.12%), Postives = 95/127 (74.80%), Query Frame = 3
Query:  360 GDRVSETRRKALVTGTSTGLGLEIALGFAQNGYDIAFADRDAAMLDEVMARPELANVNAVPVTLELTSEDSIKDGLNAAIEGLGGLDVVVNNAALALIKPVVDVTWDDWDRLVSVNLKGAYFLSARL 740
            G    E  R+AL+TG +TGLG EIAL  A++GYD+  ADRD   LD++M  P+L NVN +PV++EL SE+SI +G +  I GLGGLDV+VNNAA  LIK  +DVTWD+WD ++++NLKG++FL+  L
Sbjct:    3 GSSSKELTRRALITGAATGLGREIALTLARDGYDVGLADRDKPSLDKLMNHPDLENVNTIPVSIELLSEESINEGFSDVINGLGGLDVLVNNAAKPLIKQAIDVTWDEWDDVLNINLKGSFFLACLL 129          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: UPI001BA5E0D8 (hypothetical protein n=2 Tax=Roseomonas hellenica TaxID=2687306 RepID=UPI001BA5E0D8)

HSP 1 Score: 141 bits (355), Expect = 2.480e-38
Identity = 79/175 (45.14%), Postives = 95/175 (54.29%), Query Frame = 1
Query:    1 MDTNNISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMGD--------------------------------------------------------TAEGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHPDITDAAADSGLARDEAGDL 357
            +D  N+S++EME+FVARFATL GSEEAFVDS LPG RRFK+N VGMG                                                         T EGEK I L+PFD I VP GVYRGFR+VGEG+GTLLT+IGGPDAG+V W P + + AA  G++R   G +
Sbjct:    6 IDPENVSIAEMERFVARFATLRGSEEAFVDSNLPGARRFKINLVGMGVVEREDLPDLKPNIPLPAHGFNLGMIQAEHGNGASLHAHTTEEVFMPLIGPWAVFWMTKEGEKEIVLQPFDCIHVPTGVYRGFRYVGEGRGTLLTLIGGPDAGKVTWEPGVLEKAAAIGVSRGADGQV 180          
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Match: UPI001BA7B65A (hypothetical protein n=1 Tax=Roseomonas arctica TaxID=1509237 RepID=UPI001BA7B65A)

HSP 1 Score: 138 bits (347), Expect = 3.700e-37
Identity = 78/171 (45.61%), Postives = 93/171 (54.39%), Query Frame = 1
Query:   13 NISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMGD--------------------------------------------------------TAEGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHPDITDAAADSGLARDEAGDL 357
            N+SV+EME+FVARFATL GSEEAFVDS LPG RRFK+N VGMG                                                         T  GEK I L+PFD I VP GVYRGFR+VGEG+GTLLT+IGGPDAG+V W P + + AA  G++R+  G +
Sbjct:    9 NMSVAEMERFVARFATLRGSEEAFVDSHLPGSRRFKINLVGMGVVEREDLPDLKPNIPLGAHGFNLGMIQAEHGNGASLHAHTTEEVFMPLVGPWAVVWMTEAGEKEIILQPFDCIHVPTGVYRGFRYVGEGRGTLLTLIGGPDAGKVAWEPSVLEKAAAMGVSRNATGQV 179          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101832.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PN48_9PROT2.190e-5154.19Cupin n=3 Tax=Alphaproteobacteria TaxID=28211 RepI... [more]
A0A2E8XT82_9PROT1.620e-4851.96Cupin n=1 Tax=Alphaproteobacteria bacterium TaxID=... [more]
A0A848WA83_9PROT1.950e-4561.98SDR family oxidoreductase n=1 Tax=Alphaproteobacte... [more]
A0A2E7PNC0_9PROT9.270e-4464.962-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhodos... [more]
A0A2E8XT34_9PROT1.040e-4364.412-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Alphap... [more]
A0A2E3XBL3_9PROT1.930e-4257.852-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhodos... [more]
A0A2E7I4Y3_9PROT1.820e-4158.062-deoxy-D-gluconate 3-dehydrogenase n=2 Tax=Alphap... [more]
A0A2S6QJV4_9PROT2.140e-4155.12Glucose 1-dehydrogenase 2 n=1 Tax=Alphaproteobacte... [more]
UPI001BA5E0D82.480e-3845.14hypothetical protein n=2 Tax=Roseomonas hellenica ... [more]
UPI001BA7B65A3.700e-3745.61hypothetical protein n=1 Tax=Roseomonas arctica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101832contigL-digitata_M_contig101832:153..892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog290400.Jann_2945
PFAMsCupin_2
Model size740
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-22
EggNOG OGsCOG0662@1|root,COG0662@2|Bacteria,1QVPA@1224|Proteobacteria,2TWJ8@28211|Alphaproteobacteria
DescriptionCupin domain
Cds size372
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.3037086-CDS-L-digitata_M_contig101832:152..5241682406623.3037086-CDS-L-digitata_M_contig101832:152..524Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101832 153..524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.313703-UTR-L-digitata_M_contig101832:524..8921682406623.313703-UTR-L-digitata_M_contig101832:524..892Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101832 525..892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101832.1.1prot_L-digitata_M_contig101832.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101832 153..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101832.1.1

>prot_L-digitata_M_contig101832.1.1 ID=prot_L-digitata_M_contig101832.1.1|Name=mRNA_L-digitata_M_contig101832.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp
MDTNNISVSEMEQFVARFATLHGSEEAFVDSRLPGHRRFKVNHVGMGDTA
EGEKSITLEPFDSISVPQGVYRGFRHVGEGKGTLLTIIGGPDAGRVDWHP
DITDAAADSGLARDEAGDLKVTA*
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mRNA from alignment at L-digitata_M_contig101832:153..892+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101832.1.1 ID=mRNA_L-digitata_M_contig101832.1.1|Name=mRNA_L-digitata_M_contig101832.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=740bp|location=Sequence derived from alignment at L-digitata_M_contig101832:153..892+ (Laminaria digitata LdigPH10_18mv male)
ATGGATACGAACAACATTTCGGTTTCAGAGATGGAGCAGTTCGTTGCGCG CTTCGCGACACTGCATGGCTCTGAGGAAGCATTCGTCGACAGTCGGTTGC CAGGCCATCGCCGCTTCAAGGTGAACCATGTCGGGATGGGTGATACGGCT GAGGGCGAGAAGTCGATCACGCTGGAGCCGTTTGACTCGATCAGTGTCCC GCAGGGCGTCTATCGCGGCTTCCGCCATGTGGGCGAGGGCAAGGGAACCC TGCTCACGATTATCGGCGGTCCTGATGCGGGTCGGGTCGATTGGCACCCG GATATCACCGACGCAGCGGCTGATTCCGGGCTGGCGCGCGACGAAGCTGG TGACCTGAAGGTGACCGCGTGAGCGAGACGCGCCGCAAGGCCCTCGTCAC CGGGACCTCGACGGGGCTGGGGCTGGAGATTGCGCTTGGATTTGCCCAGA ACGGCTATGACATTGCCTTTGCAGATCGCGATGCGGCGATGCTTGATGAG GTGATGGCGCGTCCGGAACTGGCCAACGTCAACGCTGTGCCAGTGACTTT GGAGCTGACATCCGAAGACAGCATCAAGGATGGCCTGAATGCGGCCATTG AAGGTCTTGGCGGCCTCGATGTGGTTGTGAACAACGCCGCATTGGCGCTC ATCAAACCTGTCGTCGATGTGACATGGGATGACTGGGATCGTCTTGTGAG CGTGAACCTCAAGGGTGCGTATTTTCTCTCCGCCCGTTTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101832:153..892+

>mRNA_L-digitata_M_contig101832.1.1 ID=mRNA_L-digitata_M_contig101832.1.1|Name=mRNA_L-digitata_M_contig101832.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig101832:153..892+ (Laminaria digitata LdigPH10_18mv male)
ATGGATACGAACAACATTTCGGTTTCAGAGATGGAGCAGTTCGTTGCGCG
CTTCGCGACACTGCATGGCTCTGAGGAAGCATTCGTCGACAGTCGGTTGC
CAGGCCATCGCCGCTTCAAGGTGAACCATGTCGGGATGGGTGATACGGCT
GAGGGCGAGAAGTCGATCACGCTGGAGCCGTTTGACTCGATCAGTGTCCC
GCAGGGCGTCTATCGCGGCTTCCGCCATGTGGGCGAGGGCAAGGGAACCC
TGCTCACGATTATCGGCGGTCCTGATGCGGGTCGGGTCGATTGGCACCCG
GATATCACCGACGCAGCGGCTGATTCCGGGCTGGCGCGCGACGAAGCTGG
TGACCTGAAGGTGACCGCGTGA
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