mRNA_L-digitata_M_contig101824.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101824.1.1
Unique NamemRNA_L-digitata_M_contig101824.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A059E5H0_9PROT (Glyco_trans_2-like domain-containing protein n=5 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A059E5H0_9PROT)

HSP 1 Score: 231 bits (590), Expect = 5.360e-73
Identity = 118/130 (90.77%), Postives = 121/130 (93.08%), Query Frame = 1
Query:    1 MTSVAPPSVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKFSVDAST 390
            MTSVA PSVTVILPTFNRAHLIAESI+SLLAQTWPIEEIIVVDDGSTD TDRVVAAYERQVRYLKKANGGKLSALNVGLTCA GDLIWIMDDDDIAP D LENLI PFLE  +TNISYGAL KFSV+AST
Sbjct:    1 MTSVAAPSVTVILPTFNRAHLIAESINSLLAQTWPIEEIIVVDDGSTDETDRVVAAYERQVRYLKKANGGKLSALNVGLTCARGDLIWIMDDDDIAPVDALENLIAPFLESPETNISYGALQKFSVNAST 130          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A3B9GZU9_9PROT (Glyco_trans_2-like domain-containing protein n=3 Tax=Hyphomonas TaxID=85 RepID=A0A3B9GZU9_9PROT)

HSP 1 Score: 156 bits (395), Expect = 1.710e-43
Identity = 77/125 (61.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:    7 SVAPPSVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKFSVD 381
            S   PSV+VILPTFNRAHLIA SI SL  QT+PI EI+VVDDGSTD+T+ VVA +  +VRY+++ NGGK +A+N GL    GDL+WIMDDDD+AP D LE L+ PF+    T I+YGAL KF  D
Sbjct:   13 STPAPSVSVILPTFNRAHLIAASIMSLFEQTYPISEILVVDDGSTDNTEAVVAGFADRVRYVRQENGGKNAAINTGLKGVEGDLVWIMDDDDLAPRDALERLVAPFIADPSTAITYGALQKFRED 137          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A062UID7_9PROT (Glyco_trans_2-like domain-containing protein n=1 Tax=Hyphomonas chukchiensis TaxID=1280947 RepID=A0A062UID7_9PROT)

HSP 1 Score: 149 bits (375), Expect = 9.090e-41
Identity = 73/128 (57.03%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    7 SVAPPSVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKFSVDAST 390
            S + PSV+VILPT+NR+ LI  SI++LL Q++PI EI+VVDDGS+D+T  VVA +   VRY+++ NGGK +A+N GL    GDL+WIMDDDD+AP D LE L++PF+    T ISYGAL KF  D  T
Sbjct:    6 SKSSPSVSVILPTYNRSGLITASIETLLNQSYPIAEIVVVDDGSSDNTAEVVAKFGTSVRYIRRENGGKNAAINTGLRQVRGDLVWIMDDDDLAPVDALERLVSPFITEPSTAISYGALQKFREDPET 133          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A059G3T4_9PROT (Family 2 glycosyl transferase n=2 Tax=Hyphomonas oceanitis TaxID=81033 RepID=A0A059G3T4_9PROT)

HSP 1 Score: 127 bits (320), Expect = 1.130e-32
Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 1
Query:   22 SVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKFSVD 381
            +VTV++PTFNR+  + ESI+SLLAQTWPI +IIV++DGS D T  V+ AYE +V  + K NGGK +ALN+ L   S  L+WI DDDD+A  D L  L+   L   D N++YG   +F+VD
Sbjct:   10 NVTVLIPTFNRSGFLVESIESLLAQTWPIHKIIVINDGSNDDTLEVLKAYEGRVDVISKPNGGKAAALNMALELVSDGLVWIFDDDDLALPDGLATLMKVLLNAPDANMAYGRHERFTVD 129          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A2W7Q0L3_9RHOB (Glycosyltransferase involved in cell wall biosynthesis n=1 Tax=Roseinatronobacter thiooxidans TaxID=121821 RepID=A0A2W7Q0L3_9RHOB)

HSP 1 Score: 127 bits (318), Expect = 2.150e-32
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   19 PSVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKFSVD 381
            P V+VILPTFNR   +AE+I S+LAQ  P  +I+VVDDGSTD T  + A +   + Y+++ N GKL+A+  GL   SGDL+WIMDDDDIA  D L+NL+ PF++  +  +SYG + +F  D
Sbjct:    5 PRVSVILPTFNRHTYLAEAITSVLAQRAPPLDIVVVDDGSTDSTPDICAQFAHDITYVRQENAGKLAAIATGLDRTSGDLVWIMDDDDIAAPDALQNLVAPFMQNPELVLSYGRMTRFDDD 125          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: UPI001C7EB986 (glycosyltransferase n=1 Tax=Hyphomonas sp. WL0036 TaxID=2866160 RepID=UPI001C7EB986)

HSP 1 Score: 125 bits (313), Expect = 7.620e-32
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   25 VTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKFSVDAST 390
            ++VILPTFNRA++IAE++DSL+AQT P+ EI+V+DDGSTD+T  V+  Y ++V Y++K NGGK SALN+GL   +GD IWI DDDD+   D  E L       S    + G    F++D+ T
Sbjct:    5 ISVILPTFNRANMIAETLDSLIAQTRPVREILVIDDGSTDNTHDVIMRYAQKVTYIRKENGGKASALNLGLERCTGDYIWICDDDDLLEPDACERLAGALDADSTLGFAAGKHEDFTIDSRT 126          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A258GVH3_9PROT (Glyco_trans_2-like domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 32-64-14 TaxID=1970492 RepID=A0A258GVH3_9PROT)

HSP 1 Score: 125 bits (313), Expect = 2.130e-31
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   22 SVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLK-KANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKFSVDA 384
            +V+V+LPTFNRA L+ E+IDS+L QT    EII++DDGSTD T  V AAY  +V+Y++   NGGK +A+N GL  A+G++IW+MDDDDIAP D L+ L+ P         ++G+L KF++ A
Sbjct:   29 TVSVLLPTFNRAQLLGEAIDSVLEQTHLPLEIIILDDGSTDETPSVCAAYASKVKYVRISENGGKTAAINAGLELAAGNVIWVMDDDDIAPPDALKTLLAPLQADPKLGFTFGSLKKFTMTA 150          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A0Q7SZ96_9CAUL (Glycosyl transferase n=2 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A0Q7SZ96_9CAUL)

HSP 1 Score: 121 bits (303), Expect = 3.870e-30
Identity = 61/122 (50.00%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    7 SVAPPSVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKF 372
            S AP  V++I+PTFNRA L+ E+++SL+AQ+ P  EI+VVDDGS D T  VV  +   V YL++ N GK +ALN+GL+ AS D +WI DDDDIA  + LE L  P     D + +YG   KF
Sbjct:    8 STAPLPVSIIIPTFNRARLLGEALNSLVAQSRPAAEILVVDDGSDDDTATVVERFGPAVTYLRQDNSGKAAALNLGLSLASQDAVWIFDDDDIAAPEALERLYAPLAADPDLDFTYGLCDKF 129          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A0D0QAD6_9RHOB (Putative glycosyltransferase n=1 Tax=Wenxinia marina DSM 24838 TaxID=1123501 RepID=A0A0D0QAD6_9RHOB)

HSP 1 Score: 120 bits (301), Expect = 5.400e-30
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = 1
Query:   22 SVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYGALPKFSVD 381
            +V+ I+PTFNR+ L+AE +DSLL+QT P ++I+VVDDGSTD+T  +V+ Y   V Y++K NGGK SALN+ L+  +GD +WI DDDDIA A  LE ++  F E       +G    F VD
Sbjct:   11 TVSAIVPTFNRSALLAECLDSLLSQTRPPDQILVVDDGSTDNTAEIVSRYAPAVSYVRKENGGKSSALNLALSMVTGDYVWICDDDDIAAAGGLEAMMRGFAENPSVAYVFGDYRSFQVD 130          
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Match: A0A7X7GH48_RHOSO (Glycosyltransferase family 2 protein n=1 Tax=Rhodococcus sp. TaxID=1831 RepID=A0A7X7GH48_RHOSO)

HSP 1 Score: 120 bits (300), Expect = 9.300e-30
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    7 SVAPPSVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHTDRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADPLENLITPFLECSDTNISYG 357
            +V    V+VI+PTFNRA L+ ++IDSLL QT P  +IIVVDDGSTD T  VV+ Y   V+Y+ + NGGK +ALN GLT  +G+  WI+DDDD+A  D LE L     +  D   SYG
Sbjct:   32 TVTTSDVSVIVPTFNRAALLGQTIDSLLRQTTPARQIIVVDDGSTDETAAVVSRYRGSVQYIYRPNGGKPAALNTGLTHVTGEYTWILDDDDVACPDALERLAAALDQNLDCGFSYG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101824.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059E5H0_9PROT5.360e-7390.77Glyco_trans_2-like domain-containing protein n=5 T... [more]
A0A3B9GZU9_9PROT1.710e-4361.60Glyco_trans_2-like domain-containing protein n=3 T... [more]
A0A062UID7_9PROT9.090e-4157.03Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A059G3T4_9PROT1.130e-3251.67Family 2 glycosyl transferase n=2 Tax=Hyphomonas o... [more]
A0A2W7Q0L3_9RHOB2.150e-3250.41Glycosyltransferase involved in cell wall biosynth... [more]
UPI001C7EB9867.620e-3250.00glycosyltransferase n=1 Tax=Hyphomonas sp. WL0036 ... [more]
A0A258GVH3_9PROT2.130e-3150.82Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A0Q7SZ96_9CAUL3.870e-3050.00Glycosyl transferase n=2 Tax=unclassified Caulobac... [more]
A0A0D0QAD6_9RHOB5.400e-3050.00Putative glycosyltransferase n=1 Tax=Wenxinia mari... [more]
A0A7X7GH48_RHOSO9.300e-3052.14Glycosyltransferase family 2 protein n=1 Tax=Rhodo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101824contigL-digitata_M_contig101824:1..390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207058.L53_09680
PFAMsGlycos_transf_2
Model size390
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.79e-74
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,1MZSD@1224|Proteobacteria,2UF6H@28211|Alphaproteobacteria,43Z80@69657|Hyphomonadaceae
DescriptionGlycosyltransferase like family 2
Cds size390
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.1947224-CDS-L-digitata_M_contig101824:0..3901682406623.1947224-CDS-L-digitata_M_contig101824:0..390Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101824 1..390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101824.1.1prot_L-digitata_M_contig101824.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101824 1..390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101824.1.1

>prot_L-digitata_M_contig101824.1.1 ID=prot_L-digitata_M_contig101824.1.1|Name=mRNA_L-digitata_M_contig101824.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=130bp
MTSVAPPSVTVILPTFNRAHLIAESIDSLLAQTWPIEEIIVVDDGSTDHT
DRVVAAYERQVRYLKKANGGKLSALNVGLTCASGDLIWIMDDDDIAPADP
LENLITPFLECSDTNISYGALPKFSVDAST
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mRNA from alignment at L-digitata_M_contig101824:1..390-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101824.1.1 ID=mRNA_L-digitata_M_contig101824.1.1|Name=mRNA_L-digitata_M_contig101824.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=390bp|location=Sequence derived from alignment at L-digitata_M_contig101824:1..390- (Laminaria digitata LdigPH10_18mv male)
ATGACGTCTGTTGCCCCGCCATCCGTAACCGTAATCCTTCCGACCTTTAA TCGGGCTCATCTGATTGCGGAAAGTATCGATAGTTTGTTGGCGCAGACTT GGCCCATTGAAGAAATCATTGTCGTTGACGACGGTTCTACCGACCACACG GATCGTGTGGTGGCAGCGTATGAGCGGCAAGTCAGGTATTTGAAGAAGGC GAATGGCGGGAAACTTTCAGCTCTGAACGTCGGACTCACCTGCGCAAGCG GCGACCTCATCTGGATCATGGATGATGACGATATCGCACCAGCGGATCCG CTAGAGAACCTGATCACACCATTTCTGGAGTGTTCGGACACAAACATCTC GTATGGTGCGTTGCCGAAATTCTCCGTGGACGCGAGCACC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101824:1..390-

>mRNA_L-digitata_M_contig101824.1.1 ID=mRNA_L-digitata_M_contig101824.1.1|Name=mRNA_L-digitata_M_contig101824.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=390bp|location=Sequence derived from alignment at L-digitata_M_contig101824:1..390- (Laminaria digitata LdigPH10_18mv male)
ATGACGTCTGTTGCCCCGCCATCCGTAACCGTAATCCTTCCGACCTTTAA
TCGGGCTCATCTGATTGCGGAAAGTATCGATAGTTTGTTGGCGCAGACTT
GGCCCATTGAAGAAATCATTGTCGTTGACGACGGTTCTACCGACCACACG
GATCGTGTGGTGGCAGCGTATGAGCGGCAAGTCAGGTATTTGAAGAAGGC
GAATGGCGGGAAACTTTCAGCTCTGAACGTCGGACTCACCTGCGCAAGCG
GCGACCTCATCTGGATCATGGATGATGACGATATCGCACCAGCGGATCCG
CTAGAGAACCTGATCACACCATTTCTGGAGTGTTCGGACACAAACATCTC
GTATGGTGCGTTGCCGAAATTCTCCGTGGACGCGAGCACC
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