mRNA_L-digitata_M_contig1018.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1018.2.1
Unique NamemRNA_L-digitata_M_contig1018.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: D7FU15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU15_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 1.240e-148
Identity = 223/273 (81.68%), Postives = 240/273 (87.91%), Query Frame = 3
Query:   18 MTGGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAIEQ 836
            M GGK+SHPECHF ASGVAA+INFPLWRAAAIGQSGF  T     NF  RY++ALKPPYKGVAATI+GMTWARAFIFYGSD GKR LEE GYS+R VTV +PPL+ ST VQLINMPIIRASITIQNP S  +SVRESLAAIYRKGGV  LWHGTSAGVMKTVPKYCVAV+VKDYM R LAPAD  DRWGTL RSA+KSVAAGVAGAALTNPLDVLRNEMFKTDLGV  ALAKLR+EEG  FAVRGMSKNLVAVAIPI +TIF+TD+LVRA+E+
Sbjct:    1 MAGGKSSHPECHFAASGVAAIINFPLWRAAAIGQSGFDTTTNMGSNFFQRYLEALKPPYKGVAATIIGMTWARAFIFYGSDRGKRKLEELGYSSRVVTVAVPPLVFSTVVQLINMPIIRASITIQNPDSKFSSVRESLAAIYRKGGVGALWHGTSAGVMKTVPKYCVAVSVKDYMERNLAPADHGDRWGTLWRSAQKSVAAGVAGAALTNPLDVLRNEMFKTDLGVRDALAKLRREEGSGFAVRGMSKNLVAVAIPITVTIFVTDVLVRAVEE 273          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A835YRL8_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL8_9STRA)

HSP 1 Score: 340 bits (872), Expect = 1.310e-109
Identity = 183/290 (63.10%), Postives = 216/290 (74.48%), Query Frame = 3
Query:   24 GGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKN-----FLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPA-DRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAIEQEGEEATTTARNQR 875
            G K+ H  CH  AS +AAV+NFPLW+A+AIGQSGF +   T        FL RY  AL+PPYKGV ATI GMTWARAFIFYGSD GK  LE  G  ++ + V LPPL+ S+TVQL+N PIIRASIT+QNP  + ++V ++L  +Y+  G++GLWHGTSAGVMKTVPKYCVAVAVKDYM   L P +P    WG   RSAKKSVAAGVAGAALTNP+DVLRNEMFKTDLGV QAL+KL  EEG  +A RGM+KNLVAV+IPI +TIF TD+L+RA  Q+G     T  N R
Sbjct:    5 GDKSQHFMCHLTASAMAAVVNFPLWKASAIGQSGFDKVLTTEGGAVPVTFLQRYAAALRPPYKGVTATIGGMTWARAFIFYGSDWGKLYLERRGVESKTICVALPPLLCSSTVQLVNQPIIRASITLQNPQCEHSTVPQALRHLYKTRGLSGLWHGTSAGVMKTVPKYCVAVAVKDYMEGVLDPPNPELGSWGAAWRSAKKSVAAGVAGAALTNPVDVLRNEMFKTDLGVRQALSKLIHEEGAQWATRGMTKNLVAVSIPIGLTIFFTDVLIRA--QDGVALAKTEGNTR 292          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A1Z5JEI3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEI3_FISSO)

HSP 1 Score: 282 bits (721), Expect = 2.640e-87
Identity = 154/278 (55.40%), Postives = 193/278 (69.42%), Query Frame = 3
Query:   24 GGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAP-ADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAIEQEGEEAT 854
            GG   +P  + +AS +AA IN+PLWRA+AIGQSGF   +      L  YV A  PPYKG  AT++GMTWARA IF+GSD GK  L + G +    TV LPPL++ST VQ +NMP++RA+ITIQ+P S + +V  +L  IY+  G AGLWHGTSAGV+K+VPKYC AV VK +M   L P  DP++R   L RSA KS AAG+AGAALTNPLDV+RNEMFKT+L +   + KL +E G+ F  RG+ KN+VAVAIP+A TIF TD LV   +Q     T
Sbjct:    2 GGTKDYPREYLIASALAATINYPLWRASAIGQSGFVVESARIPALLSPYVHAFAPPYKGALATVLGMTWARAGIFWGSDYGKEQLMQMGMAESAATV-LPPLVVSTVVQCVNMPLVRATITIQDPQSKLPNVAAALRYIYQTHGWAGLWHGTSAGVLKSVPKYCTAVVVKGFMEDWLPPPTDPSER---LWRSAYKSAAAGIAGAALTNPLDVIRNEMFKTNLELTATVQKLWRELGVRFLARGLGKNMVAVAIPVACTIFFTDALVHRTQQRQRRVT 275          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: B7GD97_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD97_PHATC)

HSP 1 Score: 276 bits (706), Expect = 6.240e-85
Identity = 147/276 (53.26%), Postives = 190/276 (68.84%), Query Frame = 3
Query:   21 TGGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKET-----ARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRW---GTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVR 824
            TG    HP  + +AS +AA IN+PLWRA+A  QSGF+            + +  YV A  PPYKG+ AT++GMTWARA IF+GSD G+  L   G+++ F TV  PPL++ST VQ INMP++R++IT+QNP S + +V  S+  IY   GV GLWHGTSAG++KTVPKY  AV VKD+M + L PADP  +      L RSA KS  AGVAGAALTNPLDV+RNEMFKT+LG+   +  L++ EG AF  RG+ KNL+AVAIP+  TIF TD +++
Sbjct:    7 TGVAKEHPWEYLMASALAATINYPLWRASATAQSGFRIAPVHIAGHAIPSGVAPYVYAFLPPYKGMLATVLGMTWARAAIFWGSDYGRDILRTGGWNDGFATVA-PPLVVSTAVQCINMPLVRSTITLQNPQSHLRTVSASVQQIYNSHGVQGLWHGTSAGILKTVPKYITAVVVKDWMEQALPPADPLSKTYHQDRLWRSAAKSAMAGVAGAALTNPLDVIRNEMFKTNLGLAATVRHLQETEGYAFVYRGLGKNLIAVAIPVGCTIFFTDAMIQ 281          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S1ZAZ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAZ4_TRICV)

HSP 1 Score: 272 bits (696), Expect = 2.480e-83
Identity = 153/290 (52.76%), Postives = 199/290 (68.62%), Query Frame = 3
Query:   18 MTGGKAS--HPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKP-----------PYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYS-NRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPAD---RWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAIEQ 836
            M GG  +  HP  + LAS ++A IN+PLWRA+A+GQSGF+  A +    +   V A+ P           PY+G+ ATI+GMTWARA IF+GSD GK  L  S    +  V   LPPL++ST VQ++N P++RA+IT+QNP SD+ +VR +L  IYR  G++GLWHGTSAGV+KTVPKYC AV VKD M   L PADP+        L RSA KS AAG+AGAALTNPLDV+RNEMFKT+ G+ + +  LR+E G  F +RG+ KN+VAVAIP++ TIF TD L++  E+
Sbjct:    1 MGGGTTARDHPGEYLLASAMSASINYPLWRASAVGQSGFRVAAASVPPAVSGLVSAVHPSVAPILYAFAPPYRGLTATILGMTWARAAIFWGSDRGKEALRASAPGMHPSVHALLPPLVVSTLVQIVNQPLVRATITLQNPESDLLNVRSALRQIYRAHGLSGLWHGTSAGVLKTVPKYCTAVVVKDAMEDWLPPADPSSPTFESDKLWRSAYKSSAAGLAGAALTNPLDVIRNEMFKTNRGLVETVHNLRKELGWRFMIRGIGKNMVAVAIPVSCTIFFTDALIQVSER 290          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7R9YDC2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDC2_9STRA)

HSP 1 Score: 271 bits (692), Expect = 9.710e-83
Identity = 147/268 (54.85%), Postives = 191/268 (71.27%), Query Frame = 3
Query:   27 GKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAI 830
            G    P  +FLAS VAAVINFPLW+A+AIGQSGF+  AR N   L  Y++ALKPPYKGV   + GMTWARA IF+GSD G++ L+E+ + +  +   +PPL+ ST VQ+ N PIIRASIT+Q+P+++  S    +  I R+ GVA LWHGTSAG+MKTVPKYC A+  KDY+   L P+D   R G L RSA K+V AGVAGA +TNP DV+RNEMFKT+  +   + +L +EE   FA RG++KN+VAV+IP+A TIF TD+  R +
Sbjct:   30 GSRKRPLPYFLASSVAAVINFPLWKASAIGQSGFRVKARGN-GALQLYIEALKPPYKGVGVVVFGMTWARAAIFFGSDWGRQRLKET-HVHDLLASAVPPLITSTFVQICNQPIIRASITLQDPSANHPSTWSVIRDICRRHGVAALWHGTSAGIMKTVPKYCCAILTKDYLEDKLPPSD-GTRQGDLQRSAVKAVIAGVAGAVITNPFDVIRNEMFKTNQSLVAVVRRLGKEEPQ-FATRGLTKNIVAVSIPVACTIFFTDLFSRML 293          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S4KCS5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCS5_9STRA)

HSP 1 Score: 266 bits (681), Expect = 5.040e-81
Identity = 149/287 (51.92%), Postives = 194/287 (67.60%), Query Frame = 3
Query:   18 MTGGKAS--HPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVD-----------ALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEES--GYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPAD---PADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVR 824
            M GG  +  HP  +  AS ++A IN+PLWRA+A+GQSGF+  A +    L   V            A  PPY+G++ATI+GMTWARA IF+GSD GK  L E+  G      TV LPPL +ST VQ++N PI+RASIT+QNP +D+ ++R+SL  IY   G+ G+WHGTSAG++KTVPKYC AV +KD M   L P D   P+     L RSA KS AAG+AGAALTNPLDV+RNEMFKT+ G+ + +  LR+  G  F +RG+ KN+VAVAIP++ TIF TD L++
Sbjct:    1 MGGGSLAREHPWDYLGASALSATINYPLWRASAVGQSGFRVLASSVPGVLSGVVPHVPPSVAPLLYAFAPPYRGLSATILGMTWARAAIFWGSDRGKDLLRENFPGMHPGMSTV-LPPLAVSTMVQIVNQPIVRASITLQNPETDLRTIRQSLRFIYVNHGLGGMWHGTSAGILKTVPKYCTAVVIKDLMEEILPPVDTSSPSAERDALWRSAYKSSAAGLAGAALTNPLDVIRNEMFKTNHGLRETVRNLRESLGWRFMIRGIGKNMVAVAIPVSCTIFFTDALIQ 286          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S0KAL9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAL9_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.200e-80
Identity = 143/268 (53.36%), Postives = 191/268 (71.27%), Query Frame = 3
Query:   60 ASGVAAVINFPLWRAAAIGQSGFKE--------TARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSN--RFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPAD---RWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVR 824
            AS +AA IN+PLWR +A+GQSGF          +A + +  L  Y+ A  PPYKG+ ATI GMTWARA IF+ SD G R++ +  + +   +V + LPPL++ST VQ++NMP++R++IT+QNP+SD+ ++R SL  IY K G+ GLWHGTSAG++KTVPKYC AV VKDYM   L   DP+    +  +L+RSA KSV AGVAGAALTNPLDV+RNEMFKT+  + + +  L ++ G     RGM KNLVAV+IP+A TIF TDML++
Sbjct:   15 ASAMAASINYPLWRVSAMGQSGFVVQTAVSSGGSAASLQRVLAPYMYAFSPPYKGMMATIAGMTWARAAIFFWSDYG-REMIQFNFPDIPGYVAILLPPLVVSTGVQIVNMPLVRSTITLQNPSSDLPNIRASLRFIYEKHGLGGLWHGTSAGILKTVPKYCTAVFVKDYMEMNLPEVDPSSPTYKSDSLIRSATKSVIAGVAGAALTNPLDVIRNEMFKTNQNLKETVVGLHKKGGWQVFARGMGKNLVAVSIPVASTIFFTDMLIQ 281          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S0ERF8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ERF8_9EUKA)

HSP 1 Score: 263 bits (672), Expect = 2.810e-79
Identity = 151/274 (55.11%), Postives = 185/274 (67.52%), Query Frame = 3
Query:   21 TGGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAP-----ADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRA 827
            T  K   P  +  ASG+AA+INFPLW+AAAIGQSGF   A    + L        PPYKGVAAT+ GMTWARA IFYG DVGK  L  SG+S   V   LP +++ST VQ+ N PI+R ++TIQNPAS   ++  +LA IYR+ GV+GLWHGT A V+KTVPKY  AV VKDY+   L P       P  +   L RSA KSVAAGVAGAALTNPLDV+RNEMFKTD G    + +L   +G++F  RG+ +NL+AVA PI +TIF+TD L+ A
Sbjct:   21 TVAKDRDPVTYLTASGLAALINFPLWKAAAIGQSGF---ASQGTSLLASARILFGPPYKGVAATLFGMTWARAAIFYGCDVGKDALLASGHSMA-VASWLPSIVISTFVQVANQPIVRGTVTIQNPASTHANLGAALADIYRQRGVSGLWHGTGASVLKTVPKYATAVWVKDYVAELLPPPPSPAGTPEHQGEVLRRSAVKSVAAGVAGAALTNPLDVIRNEMFKTDEGTLTTIRRLMSRDGLSFMHRGLGRNLLAVAAPIGMTIFLTDALLDA 290          
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S1UGC6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGC6_9STRA)

HSP 1 Score: 261 bits (666), Expect = 4.870e-79
Identity = 139/266 (52.26%), Postives = 187/266 (70.30%), Query Frame = 3
Query:   42 PECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNK--NFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGY-SNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAI 830
            P  + L+S +AAV+NFPLW+A+AIGQSGFK  +        L+ Y++ALKPPYKGV   + GMTWARA IF+GSD+G++ L+E     +  +   LPPL+ ST VQ+ N PIIRASIT+Q+P +  ++    + +I R+ GVA LWHGTSAG+MKTVPKYC A+  KDY+   L  +D   R G LVRSA K+V AG+AGA +TNP DV+RNEMFKT+  + + + +L +EE   FA RG+ KN+VAV+IP+A TIF TD+   A+
Sbjct:   16 PLPYLLSSSLAAVVNFPLWKASAIGQSGFKVKSHGGAATTALNLYLEALKPPYKGVGVVVFGMTWARAAIFFGSDLGRQQLKERRLVRSELLASALPPLVTSTVVQVCNQPIIRASITLQDPQTQYDNTLAVMRSIARRHGVAALWHGTSAGIMKTVPKYCTAIMAKDYLEDRLPQSD-GTRAGALVRSATKAVLAGMAGAIITNPFDVVRNEMFKTNQSLTEVITRLYREEPN-FATRGLGKNVVAVSIPVACTIFFTDLFTSAL 279          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU15_ECTSI1.240e-14881.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRL8_9STRA1.310e-10963.10Mitochondrial carrier domain-containing protein n=... [more]
A0A1Z5JEI3_FISSO2.640e-8755.40Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7GD97_PHATC6.240e-8553.26Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1ZAZ4_TRICV2.480e-8352.76Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9YDC2_9STRA9.710e-8354.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4KCS5_9STRA5.040e-8151.92Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0KAL9_9STRA1.200e-8053.36Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S0ERF8_9EUKA2.810e-7955.11Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S1UGC6_9STRA4.870e-7952.26Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1018contigL-digitata_M_contig1018:1701..6489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU15
PFAMsMito_carr
Model size1867
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue8.7e-155
EggNOG OGs2C9EI@1|root,2RYD4@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-27_001070.1
DescriptionMitochondrial carrier protein
Cds size912
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1018.2.1prot_L-digitata_M_contig1018.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1018 1718..5551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.7686515-UTR-L-digitata_M_contig1018:1700..17171682406622.7686515-UTR-L-digitata_M_contig1018:1700..1717Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1018 1701..1717 +
1682406622.8374388-UTR-L-digitata_M_contig1018:5551..64891682406622.8374388-UTR-L-digitata_M_contig1018:5551..6489Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1018 5552..6489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.7797234-CDS-L-digitata_M_contig1018:1717..18661682406622.7797234-CDS-L-digitata_M_contig1018:1717..1866Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 1718..1866 +
1682406622.7892234-CDS-L-digitata_M_contig1018:2303..23581682406622.7892234-CDS-L-digitata_M_contig1018:2303..2358Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 2304..2358 +
1682406622.8001125-CDS-L-digitata_M_contig1018:3164..33221682406622.8001125-CDS-L-digitata_M_contig1018:3164..3322Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 3165..3322 +
1682406622.809899-CDS-L-digitata_M_contig1018:3815..38281682406622.809899-CDS-L-digitata_M_contig1018:3815..3828Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 3816..3828 +
1682406622.8192914-CDS-L-digitata_M_contig1018:4341..44821682406622.8192914-CDS-L-digitata_M_contig1018:4341..4482Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 4342..4482 +
1682406622.8282788-CDS-L-digitata_M_contig1018:5155..55511682406622.8282788-CDS-L-digitata_M_contig1018:5155..5551Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 5156..5551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1018.2.1

>prot_L-digitata_M_contig1018.2.1 ID=prot_L-digitata_M_contig1018.2.1|Name=mRNA_L-digitata_M_contig1018.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=304bp
MTGGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHR
YVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVG
LPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGL
WHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRWGTLVRSAKKSVA
AGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNL
VAVAIPIAITIFMTDMLVRAIEQEGEEATTTARNQRKQTSPITGQHSNQD
QIG*
back to top

mRNA from alignment at L-digitata_M_contig1018:1701..6489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1018.2.1 ID=mRNA_L-digitata_M_contig1018.2.1|Name=mRNA_L-digitata_M_contig1018.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4789bp|location=Sequence derived from alignment at L-digitata_M_contig1018:1701..6489+ (Laminaria digitata LdigPH10_18mv male)
GCTACCGGCGCGCTCGGATGACTGGAGGGAAGGCTTCCCATCCGGAATGC CACTTCCTCGCTTCTGGCGTGGCCGCGGTGATCAATTTCCCTCTTTGGCG AGCTGCCGCAATCGGCCAGAGCGGCTTCAAGGAAACTGCTCGAACGAACA AGAACTTCTTGCACCGGTGGGTTAATTCTAACCGTTTACCTGGTACGTAG TAGGGCGATGAGGTGTGGCACGGCACAGGCAGGCACGAAGCCGAGCTTAC CTCCCGTGTCCCCGTCATAGCTTGCACCATGGTGATGCTGCGAAGAACTG CTTGATCAGAATAGTTGGAGACGTAGAAATATGCCAACCTGAAAACTGGT GGCTGATTCCCTGATTTGTACAGTCAGCAGTTTTTTTTTTTTACAGTCAG CAGAAGTAAATCAAGCCATGCCCCGCACTTTGACAGACCTGCGACCGGGC ACGAGGCACGAGTACGACACGGCGGTAGGAACGATGCCACAGGGCCCCGA AAAGCTGTGGTGTTTCGCTGTTGTGCAAACCCTTTCCCCTGCACGTGACC GCCACCCGCCACGACTCATGATGTCACGCATGTGTTTTGTTCTGCTGCTT TAGGTATGTGGACGCCCTCAAACCGCCCTACAAGGGCGTCGCCGCTACTA TCGTCGGGGTGAGTCTCACGTTCAGCAAGAGATCGTACCTGGTACGGTCA GCATGTACAGCAGTACGTGCAGACGTGCAATACTCGTTCGTGTACGAAGC AACATCACACCTGGTTGACCGGGCTGACGTACTTATATCTCCTGCCTACT GCACCACCTTGTACATCGTTCGTAGTCGTGCACGAGAGACTTTCTGCTTT TCCCGGACGGTGGTGGTGCAGTCGGCACCATGCACCGCCTACGTAGCGAG CTTGCCCGACTATAACACGACGGTGGATGCAATAATTGATGACGCCTACC TGGTCATGATGCAAGTCTGGACTACCGGTATACCGCACGAGTACAATACG ACGTGTCTCAGGCAGGAGCACACTGAGAGGTACCTGGTATATATGTATCG ATTCGTTCGTACAGCGTTGCCGTGTTCGTTGTGACGTAATGGCAGTGACC TACGACGGATAGCACCGTTGATAGCACCGTTGCCAGGCCGAACTCCAACG ATTTGTGTCTCACTTCGAAGAGACGACCCCCCTACAACGTGCACATCGTC ACGTGGACACGGCAATTACTGATGTGTCTTCCATGCTGCTGCCCTAACGT TCCGCCCTGACAATTCAACACGCGCCATTGCCTCTTGACAACAGTTAGAG CTGCAATTACATGTAGAGTACTGATAAAGTTTAGCGTTGGTATTGTCCTC TCACCACTACATGGGGGGACTCGGAATTGTTTTGTGAATTCGTCCACCAA CCACGAACTCCTCCGCCTTCATTCTGCCACTGCTGCACTGTGCACGTGCT TTCTGTGCCAATAGATGACGTGGGCGAGGGCGTTTATTTTCTACGGGAGC GATGTGGGCAAGCGCGATCTGGAGGAGAGCGGATATTCTAACCGATTCGT CACCGTTGGCCTGCCGCCGTTGATGTTGTCCACGACTGTGCAACTCATCA ACATGCCCATCATTCGTGCAAGGTGGAGCTACAAAACGTGAACGCTTTGG TGTTGCAGTAGCGCTGCAGACCGGCGGCCAGACTGCTGTGTACCATAGTA TTATTCATAAGTCGCGAGTGTTGCATTGAGTGATGGGTGATGGATATGGT TTGTGTAGGACCCTATCTACATTTTGAGTGTGTTGGTATGGTGACAATTG GCGTGTTCTCTTCGAAGGCCTTCGCACCGTTCCCTCTGACGTTACCCATC CTACGGGGATGCCGGACATCCTATTCCATGTAACGCTGCGTCGCTTTGAT TGGTTACGTGTTTCCGAAAGCGAAAACCGCAGCGTATAAGCCTTCACGGC CCCTTCTTGCTTATTTTTTTTTGCCACCAGGGGACCCACCCCAAGTGCTG ACACTGCGTTTTCGTTGCCCCATGCCCTACTGTTGCCCTCCTTGTTGTGC GTCTACTGTTCATGTTGTACTTGCTACCGTACCCGGCCACTTATGTGCGC GTTGGGCGGAGACAGCATCACTATCCAGGTGAGCGAACAGCTGTGGCTGT GTGATGTGTTCCGTCGATGCGCCGCTATCGCGGAGGTCACTATTGCTGTT GACGTTGTTGATGTTTGGGGAGGGGGCGTGTATATACGAAAGAGGTTGTC GCTTTTTCCCGGTTCAGCCATTTGTTGTTTCGAGTCTGTGAGGAATCCGT TTGGATGCAGTCTCCTGTCGACCGTGAAAAAACGCAATTCCTCGTCACTG CGGCTGAGGAAAAGACGGCCGGTGCGGCCCACTTTGACGTTGGCGGTCCG GACCGTAGCTGCTTCTCTACGTTGATAGGGCAGCCTCCGCTCGGCCTATT ATCCACAGAGCGCCTGCGCCGCTTGCTCTAGTGCTGTAATAGCACAGTAC GTGCTTTTCTGCAATGGTAATTATGTTCGCCACCGACGAGTTTTGTTAGA GCCATACTTGGGCCTGTACGGACCCGTCGACTATGTGCGACCGCGCTCGC TCTGATTCCAAGACCGAAATTTCCTCCTGAACTGCTTGCAGAACCCAGCT TCTGACATAAATTCGGTGCGGGAGTCGCTTGCCGCCATCTACCGCAAGGG TGGAGTGGCGGGGCTGTGGCACGGAACCTCGGCGGGGGTGATGAAGACCG TGCCGAAATACTGCGTGGCGGTTGCTGTCAAGGTGAGCCAATAGGCGGTG GGGGCTAATGGACCTGGGATAAAGTACATCAACCGTCTTTGCTAACGTCA AGGTTTAGATCCCAGCACGATTTTTGTTTTAACAGCAGTATCATAGCTCG AACGCGCACCCGCAAATAATTTTCCCGGAAAGTTCCTCGGTCAATGAGAA ATGCCAAAATGTATCTACTGTACACGCCACGGGGTCCTCTTAGAGAACTG AGCTCTGGGCACACGGTGACCGTGTCGCTTCTGGATCGTTGAACCAAAAA GTGCAGAGGCACGGGGGAAGCCGATTTTTTCGTTGTTGTCGTTCTAAGGG TGGAAACAATCGTCAGAAACCCTGAGCATTGCCTCTTTTTTGTTTACTCC CCACCGCTTGCTAGTGAAGAGGTCGGAAAGCTTAAGGCATCGCGTGGACG GCATGTTGCTGTCGGGGGGTGTAATGTATGTGGCTGATTGAACGGCGGCA GCGCCGACCGTCTGGCGGGCTCATGGCACAGCGCATGCCCTCGGCTCCCC TTCCCTCTGCCTGAAGTAGCAAAACCGCAGACGGATCTTGCTCGATACCC CACCTAAACCCCAGTTCATTTTTTTATCAAGCAACTCTCTGATCGCAAGC AAGCGTGACTTGTTCGTTCATTGCCTTGTCGCTGTCTTTTTCGTGCCTCC CCAAGGACTACATGGGCCGAACGCTTGCCCCCGCCGACCCCGCCGACCGA TGGGGCACCTTGGTGCGCTCGGCGAAGAAGTCTGTGGCCGCCGGAGTAGC CGGCGCGGCCCTGACAAACCCGCTGGACGTGCTCCGCAACGAGATGTTCA AGACGGACCTCGGCGTCGGTCAGGCCCTGGCCAAGCTCCGCCAAGAGGAG GGGATGGCGTTTGCGGTGCGGGGGATGAGCAAGAACCTCGTGGCGGTGGC GATTCCCATCGCGATAACCATCTTCATGACGGACATGCTGGTGCGTGCGA TTGAGCAAGAAGGGGAGGAAGCTACGACGACGGCGAGGAATCAGCGAAAA CAGACCTCTCCTATTACGGGACAACATAGTAATCAGGACCAAATCGGGTA ATAAACATAGAGGAAATATACGAGGTATGTTTTTTGGTGTCCGTCGTTGG TCCTGATTACTATTGTCCCCCGTAACAGCAGAGGTCGGGAGAGTTAACGC GAAGAGCAACCAAACGAAACTATTACATTTTTTTATATTTTTACCGCCGG AGGTGGATTCCCCCGCCAGTGGGTGGGTGGTTTGAGTGACGGTTTGCGCA GGAGAACATTTTTGCCCGCACTGCGTAAGTGATGGGTGCAGTGGTCTTGA GATTTTTGTGCGGCGAGTTTGGGTGGTGGGCCTCCCAATTTCTCCGCAGC TTGGCGAGATATGTTGTTGCTGGGGTTTGATTGGGTGATTCCGCTCAAGG GAGAGCTTGGACCACATTGACCGTCCATTGTCCTTGGCACCCCCAGGCAT GGCGGAAAGAAATGTCTTTGGCGATAATTATGATATTGGGTGCTGTAACC AGTGATTTTGGTATTTGGGGGGAGGCATTCCTAGAATTCATGCTTCAATC GTTCGTGTCCGCTGTATTCTTTCGTCGAACTACGGGCTTGTGTTCCCATT CTTTGAATTACGGGCATGTGTTTTCATGTGTCAAGCGTGCGATGTTTTTT TATTTGTTGTGGTGCACGAGTTGGGCTTCGTTGTTTTTTTTCCTCGGTGT GGAGGGCGGGGAGGGAGGAGTTGGACGAGCATGGTCGTCGGAGCGTTTCT CATTGTTGTGGCAGTTGCCGCAATTTTTTTTGTCACGTTTGTAACATCCA AGGGACCAAAGAGGAGTTTCCCTTGTCATATGAACGTGTTTTTTCGTGTC ATAAGGGGGATGCGGAGGGATGAGGTTCACTGTGGGTCACCCCCCCCATC CGCACCACCTCTTCGCATCTTGTAAGACCCATGTATTATATTTCATGTGC TGGGGCTCAATTCCAAAGCAGCCACCATATATATAAAAC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig1018:1701..6489+

>mRNA_L-digitata_M_contig1018.2.1 ID=mRNA_L-digitata_M_contig1018.2.1|Name=mRNA_L-digitata_M_contig1018.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=912bp|location=Sequence derived from alignment at L-digitata_M_contig1018:1701..6489+ (Laminaria digitata LdigPH10_18mv male)
ATGACTGGAGGGAAGGCTTCCCATCCGGAATGCCACTTCCTCGCTTCTGG
CGTGGCCGCGGTGATCAATTTCCCTCTTTGGCGAGCTGCCGCAATCGGCC
AGAGCGGCTTCAAGGAAACTGCTCGAACGAACAAGAACTTCTTGCACCGG
TATGTGGACGCCCTCAAACCGCCCTACAAGGGCGTCGCCGCTACTATCGT
CGGGATGACGTGGGCGAGGGCGTTTATTTTCTACGGGAGCGATGTGGGCA
AGCGCGATCTGGAGGAGAGCGGATATTCTAACCGATTCGTCACCGTTGGC
CTGCCGCCGTTGATGTTGTCCACGACTGTGCAACTCATCAACATGCCCAT
CATTCGTGCAAGCATCACTATCCAGAACCCAGCTTCTGACATAAATTCGG
TGCGGGAGTCGCTTGCCGCCATCTACCGCAAGGGTGGAGTGGCGGGGCTG
TGGCACGGAACCTCGGCGGGGGTGATGAAGACCGTGCCGAAATACTGCGT
GGCGGTTGCTGTCAAGGACTACATGGGCCGAACGCTTGCCCCCGCCGACC
CCGCCGACCGATGGGGCACCTTGGTGCGCTCGGCGAAGAAGTCTGTGGCC
GCCGGAGTAGCCGGCGCGGCCCTGACAAACCCGCTGGACGTGCTCCGCAA
CGAGATGTTCAAGACGGACCTCGGCGTCGGTCAGGCCCTGGCCAAGCTCC
GCCAAGAGGAGGGGATGGCGTTTGCGGTGCGGGGGATGAGCAAGAACCTC
GTGGCGGTGGCGATTCCCATCGCGATAACCATCTTCATGACGGACATGCT
GGTGCGTGCGATTGAGCAAGAAGGGGAGGAAGCTACGACGACGGCGAGGA
ATCAGCGAAAACAGACCTCTCCTATTACGGGACAACATAGTAATCAGGAC
CAAATCGGGTAA
back to top