mRNA_L-digitata_M_contig1018.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: D7FU15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU15_ECTSI) HSP 1 Score: 439 bits (1129), Expect = 1.240e-148 Identity = 223/273 (81.68%), Postives = 240/273 (87.91%), Query Frame = 3
Query: 18 MTGGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAIEQ 836
M GGK+SHPECHF ASGVAA+INFPLWRAAAIGQSGF T NF RY++ALKPPYKGVAATI+GMTWARAFIFYGSD GKR LEE GYS+R VTV +PPL+ ST VQLINMPIIRASITIQNP S +SVRESLAAIYRKGGV LWHGTSAGVMKTVPKYCVAV+VKDYM R LAPAD DRWGTL RSA+KSVAAGVAGAALTNPLDVLRNEMFKTDLGV ALAKLR+EEG FAVRGMSKNLVAVAIPI +TIF+TD+LVRA+E+
Sbjct: 1 MAGGKSSHPECHFAASGVAAIINFPLWRAAAIGQSGFDTTTNMGSNFFQRYLEALKPPYKGVAATIIGMTWARAFIFYGSDRGKRKLEELGYSSRVVTVAVPPLVFSTVVQLINMPIIRASITIQNPDSKFSSVRESLAAIYRKGGVGALWHGTSAGVMKTVPKYCVAVSVKDYMERNLAPADHGDRWGTLWRSAQKSVAAGVAGAALTNPLDVLRNEMFKTDLGVRDALAKLRREEGSGFAVRGMSKNLVAVAIPITVTIFVTDVLVRAVEE 273
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A835YRL8_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL8_9STRA) HSP 1 Score: 340 bits (872), Expect = 1.310e-109 Identity = 183/290 (63.10%), Postives = 216/290 (74.48%), Query Frame = 3
Query: 24 GGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKN-----FLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPA-DRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAIEQEGEEATTTARNQR 875
G K+ H CH AS +AAV+NFPLW+A+AIGQSGF + T FL RY AL+PPYKGV ATI GMTWARAFIFYGSD GK LE G ++ + V LPPL+ S+TVQL+N PIIRASIT+QNP + ++V ++L +Y+ G++GLWHGTSAGVMKTVPKYCVAVAVKDYM L P +P WG RSAKKSVAAGVAGAALTNP+DVLRNEMFKTDLGV QAL+KL EEG +A RGM+KNLVAV+IPI +TIF TD+L+RA Q+G T N R
Sbjct: 5 GDKSQHFMCHLTASAMAAVVNFPLWKASAIGQSGFDKVLTTEGGAVPVTFLQRYAAALRPPYKGVTATIGGMTWARAFIFYGSDWGKLYLERRGVESKTICVALPPLLCSSTVQLVNQPIIRASITLQNPQCEHSTVPQALRHLYKTRGLSGLWHGTSAGVMKTVPKYCVAVAVKDYMEGVLDPPNPELGSWGAAWRSAKKSVAAGVAGAALTNPVDVLRNEMFKTDLGVRQALSKLIHEEGAQWATRGMTKNLVAVSIPIGLTIFFTDVLIRA--QDGVALAKTEGNTR 292
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A1Z5JEI3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEI3_FISSO) HSP 1 Score: 282 bits (721), Expect = 2.640e-87 Identity = 154/278 (55.40%), Postives = 193/278 (69.42%), Query Frame = 3
Query: 24 GGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAP-ADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAIEQEGEEAT 854
GG +P + +AS +AA IN+PLWRA+AIGQSGF + L YV A PPYKG AT++GMTWARA IF+GSD GK L + G + TV LPPL++ST VQ +NMP++RA+ITIQ+P S + +V +L IY+ G AGLWHGTSAGV+K+VPKYC AV VK +M L P DP++R L RSA KS AAG+AGAALTNPLDV+RNEMFKT+L + + KL +E G+ F RG+ KN+VAVAIP+A TIF TD LV +Q T
Sbjct: 2 GGTKDYPREYLIASALAATINYPLWRASAIGQSGFVVESARIPALLSPYVHAFAPPYKGALATVLGMTWARAGIFWGSDYGKEQLMQMGMAESAATV-LPPLVVSTVVQCVNMPLVRATITIQDPQSKLPNVAAALRYIYQTHGWAGLWHGTSAGVLKSVPKYCTAVVVKGFMEDWLPPPTDPSER---LWRSAYKSAAAGIAGAALTNPLDVIRNEMFKTNLELTATVQKLWRELGVRFLARGLGKNMVAVAIPVACTIFFTDALVHRTQQRQRRVT 275
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: B7GD97_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD97_PHATC) HSP 1 Score: 276 bits (706), Expect = 6.240e-85 Identity = 147/276 (53.26%), Postives = 190/276 (68.84%), Query Frame = 3
Query: 21 TGGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKET-----ARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRW---GTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVR 824
TG HP + +AS +AA IN+PLWRA+A QSGF+ + + YV A PPYKG+ AT++GMTWARA IF+GSD G+ L G+++ F TV PPL++ST VQ INMP++R++IT+QNP S + +V S+ IY GV GLWHGTSAG++KTVPKY AV VKD+M + L PADP + L RSA KS AGVAGAALTNPLDV+RNEMFKT+LG+ + L++ EG AF RG+ KNL+AVAIP+ TIF TD +++
Sbjct: 7 TGVAKEHPWEYLMASALAATINYPLWRASATAQSGFRIAPVHIAGHAIPSGVAPYVYAFLPPYKGMLATVLGMTWARAAIFWGSDYGRDILRTGGWNDGFATVA-PPLVVSTAVQCINMPLVRSTITLQNPQSHLRTVSASVQQIYNSHGVQGLWHGTSAGILKTVPKYITAVVVKDWMEQALPPADPLSKTYHQDRLWRSAAKSAMAGVAGAALTNPLDVIRNEMFKTNLGLAATVRHLQETEGYAFVYRGLGKNLIAVAIPVGCTIFFTDAMIQ 281
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S1ZAZ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAZ4_TRICV) HSP 1 Score: 272 bits (696), Expect = 2.480e-83 Identity = 153/290 (52.76%), Postives = 199/290 (68.62%), Query Frame = 3
Query: 18 MTGGKAS--HPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKP-----------PYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYS-NRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPAD---RWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAIEQ 836
M GG + HP + LAS ++A IN+PLWRA+A+GQSGF+ A + + V A+ P PY+G+ ATI+GMTWARA IF+GSD GK L S + V LPPL++ST VQ++N P++RA+IT+QNP SD+ +VR +L IYR G++GLWHGTSAGV+KTVPKYC AV VKD M L PADP+ L RSA KS AAG+AGAALTNPLDV+RNEMFKT+ G+ + + LR+E G F +RG+ KN+VAVAIP++ TIF TD L++ E+
Sbjct: 1 MGGGTTARDHPGEYLLASAMSASINYPLWRASAVGQSGFRVAAASVPPAVSGLVSAVHPSVAPILYAFAPPYRGLTATILGMTWARAAIFWGSDRGKEALRASAPGMHPSVHALLPPLVVSTLVQIVNQPLVRATITLQNPESDLLNVRSALRQIYRAHGLSGLWHGTSAGVLKTVPKYCTAVVVKDAMEDWLPPADPSSPTFESDKLWRSAYKSSAAGLAGAALTNPLDVIRNEMFKTNRGLVETVHNLRKELGWRFMIRGIGKNMVAVAIPVSCTIFFTDALIQVSER 290
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7R9YDC2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDC2_9STRA) HSP 1 Score: 271 bits (692), Expect = 9.710e-83 Identity = 147/268 (54.85%), Postives = 191/268 (71.27%), Query Frame = 3
Query: 27 GKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAI 830
G P +FLAS VAAVINFPLW+A+AIGQSGF+ AR N L Y++ALKPPYKGV + GMTWARA IF+GSD G++ L+E+ + + + +PPL+ ST VQ+ N PIIRASIT+Q+P+++ S + I R+ GVA LWHGTSAG+MKTVPKYC A+ KDY+ L P+D R G L RSA K+V AGVAGA +TNP DV+RNEMFKT+ + + +L +EE FA RG++KN+VAV+IP+A TIF TD+ R +
Sbjct: 30 GSRKRPLPYFLASSVAAVINFPLWKASAIGQSGFRVKARGN-GALQLYIEALKPPYKGVGVVVFGMTWARAAIFFGSDWGRQRLKET-HVHDLLASAVPPLITSTFVQICNQPIIRASITLQDPSANHPSTWSVIRDICRRHGVAALWHGTSAGIMKTVPKYCCAILTKDYLEDKLPPSD-GTRQGDLQRSAVKAVIAGVAGAVITNPFDVIRNEMFKTNQSLVAVVRRLGKEEPQ-FATRGLTKNIVAVSIPVACTIFFTDLFSRML 293
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S4KCS5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCS5_9STRA) HSP 1 Score: 266 bits (681), Expect = 5.040e-81 Identity = 149/287 (51.92%), Postives = 194/287 (67.60%), Query Frame = 3
Query: 18 MTGGKAS--HPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVD-----------ALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEES--GYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPAD---PADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVR 824
M GG + HP + AS ++A IN+PLWRA+A+GQSGF+ A + L V A PPY+G++ATI+GMTWARA IF+GSD GK L E+ G TV LPPL +ST VQ++N PI+RASIT+QNP +D+ ++R+SL IY G+ G+WHGTSAG++KTVPKYC AV +KD M L P D P+ L RSA KS AAG+AGAALTNPLDV+RNEMFKT+ G+ + + LR+ G F +RG+ KN+VAVAIP++ TIF TD L++
Sbjct: 1 MGGGSLAREHPWDYLGASALSATINYPLWRASAVGQSGFRVLASSVPGVLSGVVPHVPPSVAPLLYAFAPPYRGLSATILGMTWARAAIFWGSDRGKDLLRENFPGMHPGMSTV-LPPLAVSTMVQIVNQPIVRASITLQNPETDLRTIRQSLRFIYVNHGLGGMWHGTSAGILKTVPKYCTAVVIKDLMEEILPPVDTSSPSAERDALWRSAYKSSAAGLAGAALTNPLDVIRNEMFKTNHGLRETVRNLRESLGWRFMIRGIGKNMVAVAIPVSCTIFFTDALIQ 286
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S0KAL9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAL9_9STRA) HSP 1 Score: 265 bits (678), Expect = 1.200e-80 Identity = 143/268 (53.36%), Postives = 191/268 (71.27%), Query Frame = 3
Query: 60 ASGVAAVINFPLWRAAAIGQSGFKE--------TARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSN--RFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPAD---RWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVR 824
AS +AA IN+PLWR +A+GQSGF +A + + L Y+ A PPYKG+ ATI GMTWARA IF+ SD G R++ + + + +V + LPPL++ST VQ++NMP++R++IT+QNP+SD+ ++R SL IY K G+ GLWHGTSAG++KTVPKYC AV VKDYM L DP+ + +L+RSA KSV AGVAGAALTNPLDV+RNEMFKT+ + + + L ++ G RGM KNLVAV+IP+A TIF TDML++
Sbjct: 15 ASAMAASINYPLWRVSAMGQSGFVVQTAVSSGGSAASLQRVLAPYMYAFSPPYKGMMATIAGMTWARAAIFFWSDYG-REMIQFNFPDIPGYVAILLPPLVVSTGVQIVNMPLVRSTITLQNPSSDLPNIRASLRFIYEKHGLGGLWHGTSAGILKTVPKYCTAVFVKDYMEMNLPEVDPSSPTYKSDSLIRSATKSVIAGVAGAALTNPLDVIRNEMFKTNQNLKETVVGLHKKGGWQVFARGMGKNLVAVSIPVASTIFFTDMLIQ 281
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S0ERF8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ERF8_9EUKA) HSP 1 Score: 263 bits (672), Expect = 2.810e-79 Identity = 151/274 (55.11%), Postives = 185/274 (67.52%), Query Frame = 3
Query: 21 TGGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGYSNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAP-----ADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRA 827
T K P + ASG+AA+INFPLW+AAAIGQSGF A + L PPYKGVAAT+ GMTWARA IFYG DVGK L SG+S V LP +++ST VQ+ N PI+R ++TIQNPAS ++ +LA IYR+ GV+GLWHGT A V+KTVPKY AV VKDY+ L P P + L RSA KSVAAGVAGAALTNPLDV+RNEMFKTD G + +L +G++F RG+ +NL+AVA PI +TIF+TD L+ A
Sbjct: 21 TVAKDRDPVTYLTASGLAALINFPLWKAAAIGQSGF---ASQGTSLLASARILFGPPYKGVAATLFGMTWARAAIFYGCDVGKDALLASGHSMA-VASWLPSIVISTFVQVANQPIVRGTVTIQNPASTHANLGAALADIYRQRGVSGLWHGTGASVLKTVPKYATAVWVKDYVAELLPPPPSPAGTPEHQGEVLRRSAVKSVAAGVAGAALTNPLDVIRNEMFKTDEGTLTTIRRLMSRDGLSFMHRGLGRNLLAVAAPIGMTIFLTDALLDA 290
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Match: A0A7S1UGC6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGC6_9STRA) HSP 1 Score: 261 bits (666), Expect = 4.870e-79 Identity = 139/266 (52.26%), Postives = 187/266 (70.30%), Query Frame = 3
Query: 42 PECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNK--NFLHRYVDALKPPYKGVAATIVGMTWARAFIFYGSDVGKRDLEESGY-SNRFVTVGLPPLMLSTTVQLINMPIIRASITIQNPASDINSVRESLAAIYRKGGVAGLWHGTSAGVMKTVPKYCVAVAVKDYMGRTLAPADPADRWGTLVRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLGVGQALAKLRQEEGMAFAVRGMSKNLVAVAIPIAITIFMTDMLVRAI 830
P + L+S +AAV+NFPLW+A+AIGQSGFK + L+ Y++ALKPPYKGV + GMTWARA IF+GSD+G++ L+E + + LPPL+ ST VQ+ N PIIRASIT+Q+P + ++ + +I R+ GVA LWHGTSAG+MKTVPKYC A+ KDY+ L +D R G LVRSA K+V AG+AGA +TNP DV+RNEMFKT+ + + + +L +EE FA RG+ KN+VAV+IP+A TIF TD+ A+
Sbjct: 16 PLPYLLSSSLAAVVNFPLWKASAIGQSGFKVKSHGGAATTALNLYLEALKPPYKGVGVVVFGMTWARAAIFFGSDLGRQQLKERRLVRSELLASALPPLVTSTVVQVCNQPIIRASITLQDPQTQYDNTLAVMRSIARRHGVAALWHGTSAGIMKTVPKYCTAIMAKDYLEDRLPQSD-GTRAGALVRSATKAVLAGMAGAIITNPFDVVRNEMFKTNQSLTEVITRLYREEPN-FATRGLGKNVVAVSIPVACTIFFTDLFTSAL 279 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1018.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig1018.2.1 >prot_L-digitata_M_contig1018.2.1 ID=prot_L-digitata_M_contig1018.2.1|Name=mRNA_L-digitata_M_contig1018.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=304bp MTGGKASHPECHFLASGVAAVINFPLWRAAAIGQSGFKETARTNKNFLHRback to top mRNA from alignment at L-digitata_M_contig1018:1701..6489+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig1018.2.1 ID=mRNA_L-digitata_M_contig1018.2.1|Name=mRNA_L-digitata_M_contig1018.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4789bp|location=Sequence derived from alignment at L-digitata_M_contig1018:1701..6489+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig1018:1701..6489+ >mRNA_L-digitata_M_contig1018.2.1 ID=mRNA_L-digitata_M_contig1018.2.1|Name=mRNA_L-digitata_M_contig1018.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=912bp|location=Sequence derived from alignment at L-digitata_M_contig1018:1701..6489+ (Laminaria digitata LdigPH10_18mv male)back to top |