mRNA_L-digitata_M_contig101798.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE) HSP 1 Score: 281 bits (719), Expect = 1.560e-88 Identity = 155/231 (67.10%), Postives = 173/231 (74.89%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVA--GTKTRLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVGPGGLVTEVGDMSPKEALELLRLTSGAVQPLPEQEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEGLDNGFGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
FR GIF ++VGRGAK + L QGLARE+G AP PHG P +LDSLE +Q+L V GT RLVVLD+V EREVV+ L P G +L+VTTR+R VG G EVGDM+ +EALELL L SGAV +SR+ LPLA+AVIGAMDESR P RPDTWTK+HEKLSA PEFVYEEGLDNG GNVLELSFSALDADAKERFRRLGVLA GAL MEMLSYLWD
Sbjct: 23 FRGGIFLMSVGRGAKNRLLPLLQGLAREMGAAPAHAPHGNPGDLDSLEHVMQHLTTVVSTGTSPRLVVLDDVLEREVVEALLPLGLKLVVTTRDRSVVGVPGGCLEVGDMTEEEALELLMLASGAV-------SSRIAD----LPLAMAVIGAMDESRESPHRPDTWTKLHEKLSAKPEFVYEEGLDNGLGNVLELSFSALDADAKERFRRLGVLAGGALAPMEMLSYLWD 242
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 191 bits (485), Expect = 3.040e-52 Identity = 116/236 (49.15%), Postives = 147/236 (62.29%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVA--GTKTRLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVGPGGLVTEVGDMSPKEALELLRLTSGAVQPLPEQEAS---RVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEGLD--NGFGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
FR GIFWLTVGRGAK+ + L QGL ++G APTDTPHGVP LDSLE+ ++L AVA GT RLVVLD+VWEREVVD L P GF++LVTTR+R VG E+GDM+ +EALELL TSG V + + +VV CG LPL +A+ G++ + W K+ ++L N E L+ N VLE SF AL K+ F++ VLA GA+ S EML LW+
Sbjct: 201 FRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELE-NVVTKMEASLEDSNSLNVVLETSFDALTFRKKQAFKKTAVLAPGAVASTEMLLNLWE 435
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 189 bits (480), Expect = 1.490e-51 Identity = 116/236 (49.15%), Postives = 150/236 (63.56%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVA--GTKTRLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVG-PGGLVTEVGDMSPKEALELLRLTSGAV-QPLPE--QEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEG-LDNGFGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
FR GIFW+ VGRGAK + AL QGLA +VG APTD PHGVP LD LE+ Q+L AVA GT RLVVLD+VWEREVVD P GF++L+TTR+R VG P G + E+GDM+ +EALELLR TSG V QP + + ++VV CG LPL +A+ G+M R W ++ ++L + + G + VLE SF +L +E F ++ VLA GAL +EML LW+
Sbjct: 324 FRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRL-ELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWE 558
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 188 bits (477), Expect = 3.860e-51 Identity = 116/236 (49.15%), Postives = 151/236 (63.98%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVA--GTKTRLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVG-PGGLVTEVGDMSPKEALELLRLTSGAV-QPLPE--QEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEG-LDNGFGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
FR GIFW+ VGRGAK + AL QGLAR+VG APTD P GVP LDSLE+ Q+L AV GT RLVVLD+VWEREVVD P GF++L+TTR+R VG P G + E+GD++ +EALELLR TSGAV QP + + ++VV CG LPL +A+ G+M R W ++ ++L + + G + VLE SF +L +E F ++ VLA GAL +EML LW+
Sbjct: 307 FRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRL-ELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWE 541
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 187 bits (475), Expect = 7.080e-51 Identity = 112/235 (47.66%), Postives = 147/235 (62.55%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVAGTKT--RLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDV-GPGGLVTEVGDMSPKEALELLRLTSGAVQPLPE--QEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEGLDNG-FGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
FR GI W+ VGRGAK + L QGLAREVG APTD PHGVP LDSLE+ Q+L AVA T+ RLVVLD+VWEREVVD P GF+LL+TTR+R V P G + E+GDM+ +EALELLR TSG V P + + ++VV CG LPL +A+ G+M + W ++ ++ + + G + VLE +F +L ++ F + VLA GAL +EMLS LW+
Sbjct: 109 FRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRL-ELGDMTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKMRARGQQSSSIKVVLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWE 342
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 182 bits (463), Expect = 2.770e-49 Identity = 111/236 (47.03%), Postives = 147/236 (62.29%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVA--GTKTRLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVG-PGGLVTEVGDMSPKEALELLRLTSGAV-QPLP--EQEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEGLDN-GFGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
FR GIFW+ +GRGA + + QGLARE+G APTD PHGVP DSLE+ +Q+L AV G+ RLVVLD+VWEREVV G ++LVTTR+R VG PGGL+ E+GDM+ EALELL TSG V QP + ++VV CG LPL +A+ G+M + + W ++ E+ ++E G ++ VL SF+AL A +E F R+ VLA GA+ EML LW+
Sbjct: 301 FRGGIFWMEMGRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLL-ELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWE 535
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 181 bits (460), Expect = 7.610e-49 Identity = 110/236 (46.61%), Postives = 142/236 (60.17%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVA---GTKTRLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVGPGGLVTEVGDMSPKEALELLRLTSGAV-QP--LPEQEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEGLDNG-FGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
FR GI W+ VGRGAK + L QGLARE+GVAPTD PH VP LDSLE+ Q+L AV GT RLVVLD+VWEREVVD L P GF++L+TTR+ V ++GDM+ +EALELLR TSG V QP + ++VV CG LPL +A+ G+M + W ++ + + + G + VLE SF +L +E F R+ VLA GAL +EML LW+
Sbjct: 281 FRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRARGQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWE 516
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.060e-48 Identity = 109/235 (46.38%), Postives = 144/235 (61.28%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVA--GTKTRLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVGPGGLVTEVGDMSPKEALELLRLTSGAV-QPLPE--QEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEG-LDNGFGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
FR G+FW+ VGR AK + +L QGLARE+ APTDTPHGVP L+SLE+ Q+L VA GT RLVVLD+VWEREVVD L G ++LVTTR+R VG G + E+GDM+ +EALELL TS V QP E + ++VV CG LPL +A+ G+M + W ++ ++ + + G + VL SF AL A +E ++ VLA GAL +EML LW+
Sbjct: 65 FRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAIAGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVRGEQSSSIKVVLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWE 299
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE) HSP 1 Score: 171 bits (432), Expect = 1.070e-46 Identity = 99/233 (42.49%), Postives = 133/233 (57.08%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVA--GTKTRLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVGPG--GLVTEVGDMSPKEALELLRLTSGAVQPLPEQEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEGLDNGFGNVLELSFSALDADAKERFRRLGVLAVGALVSMEMLSYLWD 687
F+ GIFW+ VG+ + AL +GLA ++ AP++ P VP E +E V +L+ V G LVVLDNVW+RE+V TGF+ LVTTR+ V G T V ++ EALELL+ S A +P E V DCGFLPLA+A+IGAM SR P P+TW VH +L P V + G L +SF L A+ RFR+LGVLA G ++M+++LW+
Sbjct: 255 FKDGIFWVQVGQVGTGNPTALLKGLAEDLAHAPSNRPRTVPHEFRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFRCLVTTRDVAMVPRHLWGTCTPVDMLTEAEALELLKKASRATSSIPRDEGLEVADDCGFLPLAIAIIGAMGSSRVNPHSPETWRGVHARLVEEPSLVQDH-----VGGALAVSFRELSEKARARFRKLGVLARGVRAPVDMVAHLWE 482
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 4.490e-45 Identity = 109/221 (49.32%), Postives = 139/221 (62.90%), Query Frame = 1
Query: 1 FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTVQYLMAVAGTKT--RLVVLDNVWEREVVDTLRPTGFQLLVTTRNRDDVG-PGGLVTEVGDMSPKEALELLRLTSGAV-QPLPE--QEASRVVKDCGFLPLAVAVIGAMDESRAFPRRPDTWTKVHEKLSANPEFVYEEGLDNGFGN-VLELSFSALDADAKERFRRLGVLA 642
FR GIFW+ VGRGAK + AL QGLARE+G A TD PH VP LD LE+ Q+L AVA T T RLVVLD+VWEREVVD P GF++L+TTR+R V P G + EVGDM+ +EALELLR +SGAV QP + + ++VV CG LPL +A+ G+M + W ++ E L + + G + N VLE SF +L +E F +L VLA
Sbjct: 270 FRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRL-EVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGEQSSSINAVLETSFDSLAVRKQEEFLKLAVLA 489 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101798.1.1 >prot_L-digitata_M_contig101798.1.1 ID=prot_L-digitata_M_contig101798.1.1|Name=mRNA_L-digitata_M_contig101798.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=229bp FRAGIFWLTVGRGAKRHIGALFQGLAREVGVAPTDTPHGVPPELDSLEKTback to top mRNA from alignment at L-digitata_M_contig101798:4..896+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101798.1.1 ID=mRNA_L-digitata_M_contig101798.1.1|Name=mRNA_L-digitata_M_contig101798.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=893bp|location=Sequence derived from alignment at L-digitata_M_contig101798:4..896+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101798:4..896+ >mRNA_L-digitata_M_contig101798.1.1 ID=mRNA_L-digitata_M_contig101798.1.1|Name=mRNA_L-digitata_M_contig101798.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=687bp|location=Sequence derived from alignment at L-digitata_M_contig101798:4..896+ (Laminaria digitata LdigPH10_18mv male)back to top |